Telomeric Protein-DNA Point Contacts Identified by Photo-Cross-Linking Using 5-Bromodeoxyuridine

Biochemistry

Volumn 33, Issue 11, 1994, Pages 3364-3373

  Hicke, Brian J ^a   Cech, Thomas R ^a   Willis, Michael C ^a   Koch, Tad H ^a  

^a UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BROXURIDINE; DNA; HISTIDINE; TYROSINE;

ARTICLE; CILIATE; DNA CROSS LINKING; DNA SEQUENCE; ELECTROPHORETIC MOBILITY; NONHUMAN; PHOTOCHEMISTRY; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DNA INTERACTION; SITE DIRECTED MUTAGENESIS; TELOMERE; ULTRAVIOLET IRRADIATION;

AMINO ACID SEQUENCE; BASE SEQUENCE; BINDING SITES; BROMODEOXYURIDINE; CONSERVED SEQUENCE; CROSS-LINKING REAGENTS; DNA; DNA-BINDING PROTEINS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; KINETICS; LASERS; LIGHT; METHYLATION; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PHOTOCHEMISTRY; STRUCTURE-ACTIVITY RELATIONSHIP; SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, NON-P.H.S.; SUPPORT, U.S. GOV'T, P.H.S.; ULTRAVIOLET RAYS;

EID: 0028323417     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi00177a030     Document Type: Article

References (58)

1. Allen, T. D., Wick, K. L., & Matthews, K. S. (1991) J. Biol. Chem. 266, 6113–6119.
2. Bandziulis, R. J., Swanson, M. S., & Dreyfuss, G. (1989) Genes Dev. 3, 431–435.
3. Barbier, B., Charlier, M., & Maurizot, J. C. (1984) Biochemistry 23, 2933–2939.
4. Berman, J., Tachibana, C. Y., & Tye, B.-K. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 3713–3717.
5. Blackburn, E. H. (1990) Science 249, 489–490.
6. Blackburn, E. H. (1991) Nature 350, 569–573.
7. Blackburn, E. H., & Gall, J. G. (1978) J. Mol. Biol. 120, 33–53.
8. Blackburn, E. H., & Chiou, S.-S. (1981) Proc. Natl. Acad. Sci. U.S.A. 78, 2263–2267.
9. Blatter, E. E., Ebright, Y. W., & Ebright, R. H. (1992) Nature 359, 650–652.
10. Cardenas, M. E., Bianchi, A., & de Lange, T. (1993) Genes Dev. 7, 883–894.
11. Catalano, C. E., Allen, D. J., & Benkovic, S. J. (1990) Biochemistry 29, 3612–3621.
12. Cheung, M. K., Drivas, D. T., Littau, V. C., & Johnson, E. M. (1981) J. Cell Biol. 91, 309–314.
13. Dietz, T. M., & Koch, T. H. (1987) Photochem. Photobiol. 46, 971–978.
14. Dietz, T. M., & Koch, T. H. (1989) Photochem. Photobiol. 49, 121–129.
15. Fang, G., Gray, J. T., & Cech, T. R. (1993) Genes Dev 7, 870–882.
16. Gibrat, J. F., Garnier, J., & Robson, B. (1987) J. Mol. Biol. 3, 425–443.
17. Gott, J. M., Willis, M. C., Koch, T. H., & Uhlenbeck, O. C. (1991) Biochemistry 30, 6290–6295.
18. Gottschling, D. E., & Cech, T. R. (1984) Cell 38, 501–510.
19. Gottschling, D. E., & Zakian, V. A. (1986) Cell 47, 195–205.
20. Gray, J. T. (1993) Ph.D. Thesis., University of Colorado, Boulder.
21. Gray, J. T., Celander, D. W., Price, C. M., & Cech, T. R. (1991) Cell 67, 807–814.
22. Harlow, E., & Lane, D. (1988) Antibodies. A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
23. Henderson, E. R., & Blackburn, E. H. (1989) Mol. Cell. Biol. 9, 345–348.
24. Hicke, B. J., Celander, D. W., MacDonald, G. H., Price, C. M., & Cech, T. R. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 1481–1485.
25. Higuchi, R. (1990) Recombinant PCR, in PCR Protocols, pp 177–183, Academic Press, San Diego.
26. Hoffman, D. W., Query, C. C., Golden, B. C., White, S. W., & Keene, J. D. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 2495–2499.
27. Katouzian-Safadi, M., Laine, B., Chartier, F., Cremet, J. Y., Belaiche, D., Sautiere, P., & Charlier, M. (1991) Nucleic Acids Res. 19, 4937–4941.
28. Kenan, D. J., Query, C. C., & Keene, J. D. (1991) TIBS 16, 214–220.
29. Klobutcher, L. A., Swanton, M. T., Donini, P., & Prescott, D. M. (1981) Proc. Natl. Acad. Sci. U.S.A. 78, 3015–3019.
30. Lipps, H. J., Gruissem, W., & Prescott, D. M. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 2495–2499.
31. Lutz-Freyermuth, C., Query, C. C., & Keene, J. D. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 6393–6397.
32. Merrill, B. M., Williams, K. R., Chase, J. W., & Konigsberg, W. H. (1984) J. Biol. Chem. 259, 10850–10856.
33. Mirzabekov, A. D., Bavykin, S. G., Belyavsky, A. V., Karpov, V. L., Preobrazhenskaya, O. V., Shick, V. V., & Ebralidse, K. K. (1989) Methods Enzymol. 170, 386–408.
34. Moyzis, R. K., Buckingham, J. M., Cram, L. S., Dani, M., Deaven, L. L., Jones, M. D., Meyne, J., Ratliff, R. L., & Wu, J. R. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 6622–6626.
35. Nagai, K., Oubridge, C., Jessen, T. H., Li, J., & Evans, P. R. (1990) Nature 348, 515–520.
36. O'Connor, T. P., & Coleman, J. E. (1983) Biochemistry 22, 3375–3381.
37. Paradiso, P. R., Nakashima, Y., & Konigsberg, W. (1979) J. Biol. Chem. 254, 4739–4744.
38. Prescott, D. M. (1983) Mod. Cell Biol. 2, 329–352.
39. Price, C. M. (1990) Mol. Cell. Biol. 10, 3421–3431.
40. Price, C. M., & Cech, T. R. (1987) Genes Dev. 1, 783–793.
41. Price, C. M., Skopp, R., Krueger, J., & Williams, D. (1992) Biochemistry 31, 10835–10843.
42. Prigodich, R. V., Casa-Finet, J., Williams, K. R., Konigsberg, W., & Coleman, J. E. (1984) Biochemistry 23, 522–529.
43. Raghuraman, M. K., & Cech, T. R. (1989) Cell 59, 719–728.
44. Raghuraman, M. K., Dunn, C. J., Hicke, B. J., & Cech, T. R. (1989) Nucleic Acids Res. 17, 4235–4253.
45. Sambrook, J., Fritsch, E. F., & Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
46. Shamoo, Y., Williams, K. R., & Konigsberg, W. H. (1988) Proteins 4, 1–6.
47. Shaw, A.A., Falick, A. M., & Shetlar, M. D. (1992) Biochemistry 31, 10976–10983.
48. Shetlar, M. D., Hom, K., Carbonne, J., Moy, D., Steady, E., & Watanabe, M. (1984) Photochem. Photobiol. 39, 135–140.
49. Steele, J. C. H. J., & Nielsen, T. B. (1978) Anal. Biochem. 84, 218–224.
50. Vernick, K. D., & McCutchan, T. F. (1988) Mol. Biochem. Parasitol. 28, 85–94.
51. Wang, W., Skopp, M., Scofield, R., & Price, C. (1992) Nucleic Acids Res. 20, 6621–6629.
52. Watson, J. D. (1972) Nature, New Biol. 239, 197–201.
53. Weintraub, H. (1974) Cold Spring Harbor Symp. Quant. Biol. 38, 247–256.
54. Wellinger, R. J., Wolf, A. J., & Zakian, V. A. (1993) Cell 72, 51–60.
55. Willis, M. C., Hicke, B. J., Uhlenbeck, O. C., Cech, T. R., & Koch, T. (1993) Science 262, 1255–1257.
56. Wright, J. H., Gottschling, D. E., & Zakian, V. A. (1992) Genes Dev. 6, 197–210.
57. Yu, G. L., Bradley, J. D., Attardi, L. D., & Blackburn, E. H. (1990) Nature 344, 126–132.
58. Zakian, V. A. (1989) Annu. Rev. Genet. 23, 579–604.