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Volumn 235, Issue 5, 1994, Pages 1532-1547

Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG)

Author keywords

DNA structure; G DNA; G quartet; Quadruplex; Two dimensional NMR

Indexed keywords


EID: 0028318093     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1994.1105     Document Type: Article
Times cited : (359)

References (36)
  • 1
    • 0026575221 scopus 로고
    • Selection of single-stranded DNA molecules that bind and inhibit human thrombin
    • Bock, L. G., Griffin, L. C., Latham, J. A., Vermaas, E. H. & Toole, J. J. (1992), Selection of single-stranded DNA molecules that bind and inhibit human thrombin. Nature (London), 355, 564-566.
    • (1992) Nature (London) , vol.355 , pp. 564-566
    • Bock, L.G.1    Griffin, L.C.2    Latham, J.A.3    Vermaas, E.H.4    Toole, J.J.5
  • 2
    • 0003769049 scopus 로고
    • Manual, The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT
    • Briinger, A. T. (1992). XPLOR (Version 3.0) Manual, The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT.
    • (1992) XPLOR (Version 3.0)
    • Briinger, A.T.1
  • 3
    • 33845378943 scopus 로고
    • Assignment of complex lH NMR spectra via two-dimensional honionuclear Hartmann-Hahn spectroscopy
    • lH NMR spectra via two-dimensional honionuclear Hartmann-Hahn spectroscopy. J. Amer. Chem. Soc. 107, 2820-2821.
    • (1985) J. Amer. Chem. Soc , vol.107 , pp. 2820-2821
    • Davis, D.G.1    Bax, A.2
  • 4
    • 84986492501 scopus 로고
    • Computer-assisted pseudorotation analysis of five-membered rings by means of proton spin-spin coupling constants: Program PSEUROT
    • de Leeuw. F. A. A. M. & Alton a, C. (1983). Computer-assisted pseudorotation analysis of five-membered rings by means of proton spin-spin coupling constants: program PSEUROT, J. Comp. Chem. 4, 428-437.
    • (1983) J. Comp. Chem. , vol.4 , pp. 428-437
    • De, L.F.A.A.M.1    Alton A, C.2
  • 5
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington, A. D. & Szostak, J. W. (1990). In vitro selection of RNA molecules that bind specific ligands. Nature (London), 346, 818-822.
    • (1990) Nature (London) , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 6
    • 0026611032 scopus 로고
    • NMR Spectroscopy of DNA
    • (Lilley, D. M, J. & Dahlberg, J. E., eds), Academic Press, Inc., San Diego, CA
    • Feigon, J., Sklenâr, V., Wang, E., Gilbert, D. E., Macaya, R. F. & Schultze, P. (1992). NMR Spectroscopy of DNA. In Methods in Enzymology (Lilley, D. M, J. & Dahlberg, J. E., eds), Academic Press, Inc., San Diego, CA, pp. 235-253.
    • (1992) Methods in Enzymology , pp. 235-253
    • Feigon, J.1    Sklenâr, V.2    Wang, E.3    Gilbert, D.E.4    Macaya, R.F.5    Schultze, P.6
  • 7
    • 0025649498 scopus 로고
    • Four-stranded nucleic acid structures 25 years later: From guanosine gels to telomere DNA
    • Guschlbauer, W., Chantot, J.-F. & Thiele, D. (1990). Four-stranded nucleic acid structures 25 years later: from guanosine gels to telomere DNA. J. Biomol. Struct. Dynam. 8, 491-511.
    • (1990) J. Biomol. Struct. Dynam. , vol.8 , pp. 491-511
    • Guschlbauer, W.1    Chantot, J.-F.2    Thiele, D.3
  • 8
    • 0025191217 scopus 로고
    • Higher order structural elements in ribosomal RNAs M pseudo-knots and the use of noncanonica] pairs
    • Gutell, R. R. & Woese, O. R. (1990). Higher order structural elements in ribosomal RNAs M pseudo-knots and the use of noncanonica] pairs. Proc. Nat. Acad. Sci., U.S.A. 87, 663-667.
    • (1990) Proc. Nat. Acad. Sci., U.S.A. , vol.87 , pp. 663-667
    • Gutell, R.R.1    Woese, O.R.2
  • 9
    • 0026325728 scopus 로고
    • SELEXION-systematic evolution of ligands by exponential enrichment with integrated optimization by nonlinear analysis
    • Irvine, D., Tuerk, C. & Gold, L. (1991). SELEXION-systematic evolution of ligands by exponential enrichment with integrated optimization by nonlinear analysis, J. Mol. Biol. 222, 739-761.
    • (1991) J. Mol. Biol. , vol.222 , pp. 739-761
    • Irvine Tuerk, D.C.1    Gold, L.2
  • 10
    • 0026591751 scopus 로고
    • Crystal structure of four-stranded Oxytricha telomeric DNA
    • Kang, C., Zhang, X., Ratliff, R., Moyzis, R. & Rich, A. (1992). Crystal structure of four-stranded Oxytricha telomeric DNA. Nature (London), 356, 126-131.
    • (1992) Nature (London) , vol.35 , Issue.6 , pp. 126-131
    • Kang, C.1    Zhang, X.2    Ratliff, R.3    Moyzis, R.4    Rich, A.5
  • 12
    • 0019327003 scopus 로고
    • A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton-proton cross-relaxation networks in biological macromolecules
    • Kumar, A., Ernst, R. R. & Wüthrich, K. (1980). A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton-proton cross-relaxation networks in biological macromolecules. Biochem. Biophys. Res. Commun. 95, 1-6.
    • (1980) Biochem. Biophys. Res. Commun , vol.95 , pp. 1-6
    • Kumar, A.1    Ernst, R.R.2    Wüthrich, K.3
  • 13
    • 0021436726 scopus 로고
    • Carbon-13 NMR in conformational analysis of nucleic acid fragments. 2. A repara-metrization of the Karplus equation for vicinal NMR coupling constants in CCOP and HCOP fragments
    • Lankhorst, P. P., Haasnoot, C. A. G., Erkelens, C, & Altona, C. J. (1984). Carbon-13 NMR in conformational analysis of nucleic acid fragments. 2. A repara-metrization of the Karplus equation for vicinal NMR coupling constants in CCOP and HCOP fragments. J. Biomol. Struct. Dynam. 1, 1387-1405.
    • (1984) J. Biomol. Struct. Dynam. , vol.1 , pp. 1387-1405
    • Lankhorst, P.P.1    Haasnoot, C.A.G.2    Erkelens, C.3    Altona, C.J.4
  • 14
    • 0001605673 scopus 로고
    • Sugar conformations in intramolecular DNA triplexes determined by coupling constants obtained by automated simulation of P.COSY crosspeaks
    • Macaya, R. F., Schultze, P. & Feigon, J. (1992). Sugar conformations in intramolecular DNA triplexes determined by coupling constants obtained by automated simulation of P.COSY crosspeaks. J. Amer. Chem. Soc. 114, 781-783.
    • (1992) J. Amer. Chem. Soc. , vol.114 , pp. 781-783
    • Macaya, R.F.1    Schultze, P.2    Feigon, J.3
  • 15
    • 0027467617 scopus 로고
    • Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution
    • Macaya, R. F., Schultze, P., Smith, F. W., Roe, J. A. & Feigon, J. (1993). Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution. Proc. Nat. Acad. Sci., U.S.A. 90, 3745-3749.
    • (1993) Proc. Nat. Acad. Sci., U.S.A. , vol.90 , pp. 3745-3749
    • Macaya, R.F.1    Schultze, P.2    Smith, F.W.3    Roe, J.A.4    Feigon, J.5
  • 16
    • 0000244937 scopus 로고
    • P.COSY, a sensitive alternative for double-quantum-filtered COSY
    • Marion, D. & Bax, A. (1988). P.COSY, a sensitive alternative for double-quantum-filtered COSY. J. Magn. Reson. 80, 528-533.
    • (1988) J. Magn. Reson. , vol.80 , pp. 528-533
    • Marion, D.1    Bax, A.2
  • 18
    • 0025894164 scopus 로고
    • Relaxation matrix refinement of the solution structure of squash trypsin inhibitor
    • Nilges, M., Habazett), J., Brünger, A. T. & Holak, T. A. (1991). Relaxation matrix refinement of the solution structure of squash trypsin inhibitor. J. Mot. Biol. 219, 499-510.
    • (1991) J. Mot. Biol , vol.219 , pp. 499-510
    • Nilges, M.1    Habazett, J.2    Brünger, A.T.3    Holak, T.A.4
  • 19
    • 0000860985 scopus 로고
    • Sequential assignments for the H-l and P-31 atoms in the backbone of oligonucleotides by two-dimensional nuclear magnetic resonance
    • Pardi, A., Walker, R., Rapoport, H., Wider, G. & Wüthrich, K. (1983). Sequential assignments for the H-l and P-31 atoms in the backbone of oligonucleotides by two-dimensional nuclear magnetic resonance. J. Amer. Chem. Soc, 105, 1652-1653.
    • (1983) J. Amer. Chem. Soc , vol.105 , pp. 1652-1653
    • Pardi, A.1    Walker, R.2    Rapoport, H.3    Wider, G.4    Wüthrich, K.5
  • 20
    • 0021119770 scopus 로고
    • The chemistry and biology of left-handed Z-DNA
    • Rich, A., Nordheim, A. & Wang, A. H.-J. (1984). The chemistry and biology of left-handed Z-DNA. Annu. Rev. Biochem. 53, 791-846.
    • (1984) Annu. Rev. Biochem. , vol.53 , pp. 791-846
    • Rich, A.1    Nordheim, A.2    Wang, A.H.3
  • 21
    • 0000521134 scopus 로고
    • Spin-echo water suppression for the generation of pure-phase two-dimensional NMR spectra
    • Sklenâf, V. & Bax, A. (1987). Spin-echo water suppression for the generation of pure-phase two-dimensional NMR spectra. J. Magn. Reson. 74, 469-479.
    • (1987) J. Magn. Reson. , vol.74 , pp. 469-479
    • Sklenâf, V.1    Bax, A.2
  • 24
    • 0026554887 scopus 로고
    • Quadruplex structure of telomeric DNA oligonucleotides
    • Smith, F. W. & Eeigon, J. (1992). Quadruplex structure of telomeric DNA oligonucleotides. Nature (London), 356, 164-168.
    • (1992) Nature (London) , vol.356 , pp. 164-168
    • Smith, F.W.1    Eeigon, J.2
  • 25
    • 0027240171 scopus 로고
    • Strand orientation in the DNA quadruplex formed from the Oxytricka telomere repeat oligonucleotide d(G4T4G4) in solution
    • Smith, F. W. & Feigon, J. (1993). Strand orientation in the DNA quadruplex formed from the Oxytricka telomere repeat oligonucleotide d(G4T4G4) in solution. Biochemistry, 32, 8682- 8692.
    • (1993) Biochemistry , vol.32
    • Smith, F.W.1    Feigon, J.2
  • 26
    • 2642628181 scopus 로고
    • A two-dimensional nuclear Overhauser experiment with pure absorption phase in four quadrants
    • States, D. J., Haberkorn, R. A. & Ruben, D. J. (1982). A two-dimensional nuclear Overhauser experiment with pure absorption phase in four quadrants. J. Magn. Res. 48, 286-292.
    • (1982) J. Magn. Res. , vol.48 , pp. 286-292
    • States, D.J.1    Haberkorn, R.A.2    Ruben, D.J.3
  • 27
    • 84909896895 scopus 로고
    • Crystal structures of bases, nucleosides, and nucleotides
    • Saenger, W., ed.), Springer-Verlag, Berlin
    • Sundaralingam, M. & Haromy, T. P. (1989), Crystal structures of bases, nucleosides, and nucleotides. In Nucleic Acids: Crystallographic and Structural Data I (Saenger, W., ed.), Springer-Verlag, Berlin, pp. 22-254.
    • (1989) Nucleic Acids: Crystallographic and Structural Data I , pp. 22-254
    • Sundaralingam, M.1    Haromy, T.P.2
  • 29
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk, C. & Gold, E. (1990). Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science, 249, 505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, E.2
  • 30
    • 0026726087 scopus 로고
    • Furanose sugar conformations in DNA from NMR coupling constants
    • van Wijk, J., Huckriede, B. D., Ippel, J. H. & Altona, C. (1992). Furanose sugar conformations in DNA from NMR coupling constants. Methods Enzumol. 211, 286-306.
    • (1992) Methods Enzumol , vol.211 , pp. 286-306
    • Van Wijk, J.1    Huckriede, B.D.2    Ippel, J.H.3    Altona, C.4
  • 32
    • 0027537022 scopus 로고
    • A DNA aptamer which binds to and inhibits thrombin exhibits a new structural motif for DNA
    • Wang, K. Y., McCurdy, S., Shea, R. G., Swaminathan, S. & Bolton, P. H. (1993). A DNA aptamer which binds to and inhibits thrombin exhibits a new structural motif for DNA. Biochemistry, 32, 1899-1904.
    • (1993) Biochemistry , vol.32 , pp. 1899-1904
    • Wang, K.Y.1    McCurdy, S.2    Shea, R.G.3    Swaminathan, S.4    Bolton, P.H.5
  • 33
    • 0026316324 scopus 로고
    • Multinuclear nuclear magnetic resonance studies of Na cation-stabilized complex formed by d(G-G-T-T-T-T-C-G-G) in solution; implications for G-tetrad structures
    • Wang, Y., de los Santos, S., Gao, X., Greene, K., Live, D. & Patel, D. J. (1991). Multinuclear nuclear magnetic resonance studies of Na cation-stabilized complex formed by d(G-G-T-T-T-T-C-G-G) in solution; implications for G-tetrad structures. J. Mol. Biol. 222, 819-832.
    • (1991) J. Mol. Biol. , vol.222 , pp. 819-832
    • Wang, Y.1    De Los Santos, S.2    Gao, X.3    Greene, K.4    Live, D.5    Patel, D.J.6
  • 34
    • 0026464915 scopus 로고
    • Localization of the single-stranded DNA binding site in the thrombin anion-binding exosite
    • Wu, Q., Tsiang, M. & Sadler, J. E, (1992). Localization of the single-stranded DNA binding site in the thrombin anion-binding exosite. J. Biol. Chem. 34, 24408-24412.
    • (1992) J. Biol. Chem. , vol.34 , pp. 24408-24412
    • Wu, Q.1    Tsiang, M.2    Sadler, J.E.3
  • 36
    • 0024788528 scopus 로고
    • Structure and function of telomeres
    • Zakian, V. A. (1989). Structure and function of telomeres. Annu. Rev. Genet. 23, 579-604.
    • (1989) Annu. Rev. Genet. , vol.23 , pp. 579-604
    • Zakian, V.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.