Quantitative analysis of ribosome binding sites in E.coli

Nucleic Acids Research

Volumn 22, Issue 7, 1994, Pages 1287-1295

  Barrick, Doug ^a   Villanueba, Keith ^a   Childs, John ^a   Kalil, Rhonda ^a   Schneider, Thomas D ^a   Lawrence, Charles E ^a,b   Gold, Larry ^a   Stormo, Gary D ^a  

^a UNIVERSITY OF COLORADO   (United States)

^b WADSWORTH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BETA GALACTOSIDASE;

ARTICLE; BINDING SITE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE ASSAY; REGRESSION ANALYSIS; RIBOSOME; TRANSLATION INITIATION;

BASE SEQUENCE; BETA-GALACTOSIDASE; BINDING SITES; CLONING, MOLECULAR; CODON; DNA, BACTERIAL; ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; RIBOSOMES;

ESCHERICHIA COLI;

EID: 0028303468     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/22.7.1287     Document Type: Article

References (36)

1. Rudd, K.E., and Schneider, T.D., (1992) In A Short Course in Bacterial Genetics: A Laboratory Manual and Handbook for Eschtridua coli and related bacteria. (Miller. J., Ed.) Cold Spring Harbor Laboratory Press. Cold Spring Harbor. NY. pp. 17.19-17.45.
2. Gold, L., Pnbnow, D., Schneider, T D., Shinedling, S., Singer, B.S., and Stormo, G. D., (1981). Ann. Rev. Microbiol 35. 362-403
3. Stormo, G. D. (1986). In Maximizing Gene Expression Reznikoff. W. and Gold, L eds. pp 195-224. Butterworths. Stonesham. MA.
4. Gold, L. (1988) Ann. Rev. Biochem. 57. 199-233.
5. McCarthy, J., and Gualerzi, C. (1990) em Trends Genet. 6. 78-85.
6. Shine, J., and Dalgarno, L., (1974). Proc Natl Acad. Sci USA 71. 1342-1346.
7. Stormo, G D, Schneider, T. D. and Gold, L. M. (1982). Nucl. Acid Res. 10, 2971-2995.
8. Dreyfus, M (1988) J. Mol Biol. 204. 79-94
9. Hui, A., and de Boer, H., (1987) Proc. NaU. Acad. Sci USA 84. 4762-4766.
10. Looman, A.C., Bodllaender, J., de Gruyter, M., Vogelaar, A., and van Knippenberg, P H., (1986) Nucl. Acids Res. 14. 5481-5497.
11. dc Smit, M.H., and van Duin, J., (1990) Proc. Nad. Acad. Sci. USA 87. 7668-7672
12. Ringquist, S., Shinedling, S., Barrick, D., Green, L., Binkley, J., Stormo, G.D., and Gold, L., (1992) Molec. Microbiol. 6. 1219-1229.
13. Childs, J., Villanueba, K., Barnck, D., Schneider, T. D., Stormo, G. D., Gold, L., Leaner, M., and Caruthers, M., (1985). In Sequence Specificity in Transcription and Translation, UCLA Symposia on Molecular and Cellular Biology New Series. Volume 30, (Calender, R., and Gold, L., eds.) pp 341-350. Alan R. Liss, Inc, New York.
14. Dotto, G. P., Enca, V., and Zinder, N. D., (1981). Virology 20, 1645-1655.
15. de Boer, H.A., Comstock, L.J. and Vasser, M., (1983) Proc Natl. Acad. Sci. USA 80, 21-25.
16. Sanger, F., Coulson, A.R., Hong, G.F., HOI, D.F., and Peterson, G.B., (1982) J. Mol. Biol. 162, 729-773.
17. Maniatis, T., Frilsch, E. F. and Sambrook, J (1982). Molecular Cloning. A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
18. Gardella, T., Moyle, H., and Susskind, M.M., (1989) J. Mol. Biol 206. 579-590.
19. Arvidson, D.N., Youdenan, P., Schneider, T.D., and Stormo, G.D., (1991) BioTechniques 11. 733-738.
20. Miller, J. (1972). Experiments in Molecular Genetics. Cold Spring Harbor Laboratory. Cold Spring Harbor, NY.
21. Schneider, T. D., Stormo, G D., Haemer, J. S., and Gold, L., (1982). Nucl. Acid Res. 10, 3013-3024.
22. Schneider, T. D., Stormo, G. D., Yams, M. A., and Gold, L., (1984). Nucl. Acid Res. 12, 129-140.
23. Stormo, G. D., Schneider, T. D., and Gold, L (1986). Nucl. Acid Res. 14. 6661-6679.
24. Schneider, T. D., Stormo, G. D., Gold, L. and Ehrenfeucht, A. (1986) J. Mol. Biol. 188. 415-431.
25. Stormo, G.D. and Yoshioka, M. (1991) Proc Natl. Acad. Sci. USA 88 5699-5703.
26. Stormo, G.D. (1991) In Protein-DNA Interactions, Methods in Enzymology. Vol. 208 (Sauer, R.T., Ed.) Academic Press, Inc. pp.458-468.
27. Jacques, N., Guillerez, J. and Dreyfus, M. (1992) J. Mol. Biol. 226. 597-608.
28. Stormo, G.D. (1988) Ann. Rev. Biophys. Biophys. Chem 17. 241-263.
29. Zuker, M., (1989) Science 244. 48-52.
30. Schneider, T.D. and Stephens, R.M. (1990) Nucl. Acids Res. 18. 6097-6100.
31. Stormo, G.D. (1990) In Molecular Evolution- Computer Analysis of Protein and Nucleic Acid Sequences. Methods in Enzymology. Vol. 183 (Doolittle, R.F. Ed.). Academic Press, Inc. pp. 211-221.
32. Stormo, G.D., Schneider, T.D., Gold, L., and Ehrenfeucht, A. (1982) Nucl. Acids Res. 10, 2997-3012.
33. Shinedling, S., Gayle, M., Pribnow, D., and Gold, L., (1987) Mol. Gen. Genet. 207, 224-232.
34. Boni, I.V., Isaeva, D.M., Musychenko, M.L., and Tzareva, N.V., (1991) Nucl. Acids Res. 19. 155-162.
35. Zhang, J. and Deutscher, M.P (1992) Proc. Nad Acad. Sci. USA 89. 2605-2609.
36. Olins, P. and Rangwala, S., (1989) J. Biol Chem. 264, 16973-16976.