RNA editing in trypanosomes

European Journal of Biochemistry

Volumn 221, Issue 1, 1994, Pages 9-23

  BENNE, Rob ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MITOCHONDRIAL DNA; MITOCHONDRIAL RNA;

ARTICLE; NONHUMAN; PRIORITY JOURNAL; RNA EDITING; RNA SEQUENCE; TRYPANOSOMA BRUCEI;

ANIMAL; BASE SEQUENCE; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; RNA; RNA EDITING; SUPPORT, NON-U.S. GOV'T; TRYPANOSOMA;

EID: 0028202814     PISSN: 00142956     EISSN: 14321033     Source Type: Journal    
DOI: 10.1111/j.1432-1033.1994.tb18710.x     Document Type: Review

References (106)

1. Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA
2. Developmentally regulated addition of nucleotides within apocytochrome b transcripts in Trypanosoma brucei
3. Editing of kinetoplastid mitochondrial mRNAs by uridine addition and deletion generates conserved amino acid sequences and AUG initiation codons
4. Transcripts from the frameshifted MURF3 gene from Crithidia fasciculata are edited by U insertion at multiple sites
5. Extensive editing of the cytochrome c oxidase III transcript in Trypanosoma brucei
6. RNA editing and the mitochondrial cryptogenes of kinetoplast protozoa
7. RNA editing in mitochondrial mRNA of trypanosomatids
8. RNA editing in trypanosomes – is there a message?
9. RNA editing in kinetoplastid mitochondria
10. Addition of uridines to edited RNAs in trypanosome mitochondria occurs independently of transcription
11. tRNA punctuation model of RNA processing in human mitochondria
12. Apolipoprotein B mRNA editing: a new tier for the control of gene expression
13. RNA editng: exploring one mode with apolipoprotein B mRNA
14. RNA editing in plant mitochondria and chloroplasts
15. RNA editing: in chloroplasts and brain
16. Editing of the genomic RNA of human hepatitis delta virus
17. Selenocysteine inserting tRNAs are likely generated by tRNA editing
18. Two nucleotides next to the anticodon of cytoplasmic rat transfer RNA are likely generated by RNA editing
19. Editing of transfer RNAs in Acanthamoeba castelanii mitochondria
20. Kinetoplast DNA in trypanosomatid flagellates
21. Kinetoplast DNA
22. Mitochondrial genes in trypanosomes
23. The mitochondrial genome of kinetoplastid protozoa: genomic organization, transcription, replication and evolution
24. The RNA editing process in Escherichia coli
25. RNA editing in trypanosome mitochondria: guidelines for models
26. RNA editing in trypanosomatid mitochondria
27. RNA editing in transcripts of the mitochondrial genes of the insect trypanosome Escherichia coli
28. Comparison of the maxicircle (mitochondrial) genomes of Leishmania tarentolae and Trypanosoma brucei at the level of nucleotide sequence
29. RNA editing in mitochondria of Leishmania tarentolae and Escherichia coli
30. The MURF3 gene of T. brucei contains multiple domains of extensive editing and is homologous to a subunit of NADH dehydrogenase
31. An intergenic G‐rich region in Leishmania tarentolae kinetoplast maxicircle DNA is a pan‐edited cryptogene encoding ribosomal protein S12
32. An extensively edited mitochondrial transcript in kinetoplastids encodes a protein homologous to ATPase subunit‐6
33. Maxicircle CR1 transcripts of Trypanosoma brucei are edited and developmentally regulated and encode a putative iron‐sulfur protein homologous to an NADH dehydrogenase subunit
34. Extensive editing of both processed and preprocessed maxicircle CR6 transcripts in Escherichia coli
35. Analysis by electron microscopy of the variable segment in the maxi‐circle of kinetoplast DNA from Trypanosoma brucei
36. The divergent region of the L. tarentolae kinetoplast maxicircle DNA contains a diverse set of repetitive sequences
37. The nucleotide sequence of the variable region in Trypanosoma brucei completes the sequence analysis of the maxicircle component of mitochondrial kinetoplast DNA
38. Structural organization of the maxicircle variable region of Trypanosoma brucei: identification of potential replication origins and topoisomerase II binding sites
39. Replication of kinetoplast DNA in trypanosomes
40. Biogenesis of mitochondria
41. Nucleo‐mitochondrial interactions in yeast mitochondrial biogenesis
42. Kinetoplastid mitochondria contain functional tRNAs which are encoded in nuclear DNA and also contain small minicircle and maxicircle transcripts of unknown function
43. The mitochondrial tRNAs of T. brucei are nuclear encoded
44. Conserved genes encode guide RNAs in mitochondria of Escherichia coli
45. A model for RNA editing in kinetoplast mitochondria: ‘guide’ RNA molecules transcribed from maxicircle DNA provide the edited information
46. Kinetoplast DNA minicircles encode guide RNAs for editing of cytochrome oxidase subunit‐III messenger RNA
47. Leishmania tarentolae minicircles of different sequence classes encode single guide RNAs located in the variable region approximately 150 bp from the conserved region
48. The polarity of editing within a multiple gRNA‐mediated domain is due to formation of anchors for upstream gRNAs by downstream editing
49. Organization of minicircle genes for guide RNAs in Trypanosoma brucei
50. Guide RNAs for transcripts with developmentally regulated RNA editing are present in both life‐cycle stages of Escherichia coli
51. A Trypanosoma brucei minicircle encodes the same gRNAs as do minicircles of T. equiperdum ATCC 30019 and T. evansi type‐A minicircles
52. Trypanosoma brucei minicircles encode multiple guide RNAs which can direct editing of extensively overlapping sequences
53. Trypanosoma equiperdum minicircles encode three district primary transcripts which exhibit guide RNA characteristics
54. Kinetoplast minicircle DNA of Trypanosoma evansi encode guide RNA genes
55. Guide RNAs in kinetoplastid mitochondria have a nonencoded 3′ oligo(U) tail involved in recognition of the preedited region
56. RNA end‐labeling and RNA ligase activities can produce a circular rRNA in whole cell extracts from trypanosomes
57. The Leishmania kinetoplast mitochondrion contains terminal uridylyltransferase and RNA ligase activities
58. Implications of novel guide RNA features for the mechanism of RNA editing in Escherichia coli
59. Chimeric and truncated RNAs in Trypanosoma brucei suggest transesterifications at non‐consecutive sites during RNA editing
60. Sequence heterogeneity in kinetoplast DNA: reassociation kinetics
61. Comparison of several lizard Leishmania species and strains in terms of kinetoplast minicircle and maxicircle DNA sequences, nuclear chromosomes and membrane lipids
62. Sequence‐directed curvature of DNA
63. Chimeric gRNA‐mRNA molecules with oligo(U) tails covalently linked at sites of RNA editing suggest that U addition occurs by transesterification
64. Kinetoplastid RNA editing: in vitro formation of cytochrome b gRNA‐mRNA chimeras from synthetic substrate RNAs
65. In vitro guide RNA/mRNA chimaera formation in Trypanosoma brucei RNA editing
66. Formation of gRNA/mRNA chimeric molecules in vitro, the initial step of RNA editing, is dependent on an anchor sequence
67. Characterization of cytochrome c oxidase III transcripts that are edited only in the 3′ region
68. Partially edited mRNAs for cytochrome b and subunit III of cytochrome oxidase from Leishmania tarentolae mitochondria – RNA editing intermediates
69. RNA editing involves indiscriminate U changes throughout precisely defined editing domains
70. Generation of unexpected editing patterns in Leishmania tarentolae mitochondrial mRNAs: misediting produced by misguiding
71. Cycles of progressive realignment of gRNA with mRNA in RNA editing
72. RNA editing: world's smallest introns?
73. The 5′ terminal region of the apocytochrome b transcript in Crithidia fasciculata is successively edited by two guide RNAs in the 3′ to 5′ direction
74. The generality of self‐splicing RNA: relationship to nuclear splicing
75. Reverse self‐splicing of the Tetrahymena group I intron: implication for the directionality of splicing and for intron transposition
76. RNA catalysis in the excision of yeast mitochondrial introns
77. Multiple exon‐binding sites in class II self‐splicing introns
78. A small chloroplast RNA may be required for trans‐splicing in Chlamidomonas reinhardtii
79. Group II intron RNA catalysis of progressive nucleotide insertion: a model for RNA editing
80. Specific cleavage of pre‐edited mRNAs in trypanosome mitochondrial extracts
81. A ribonuclease activity is activated by heparin or by digestion with proteinase K in mitochondrial extracts of Escherichia coli
82. Guides to experiments
83. Native mRNA editing complexes from Trypanosoma brucei mitochondria
84. Stereochemistry of RNA cleavage by the Tetrahymena ribozyme and evidence that the chemical step is not rate limiting
85. Stereochemical course of catalysis by the Tetrahymena ribozyme
86. Evidence for two active sites in the spliceosome provided by stereochemistry of pre‐mRNA splicing
87. Improved free‐energy parameters for predictions of RNA duplex stability
88. Internal frameshifts within the mitochondrial genes for cytochrome oxidase subunit II and maxicircle unidentified reading frame 3 of Leishmania tarentolae are corrected by RNA editing: evidence for translation of the edited cytochrome oxidase II mRNA
89. RNA editing as a source of genetic variation
90. Evolution of parasitism: kinetoplastid history reconstructed from mitochondrial rRNA sequences
91. Phylogenetic meaning of the kingdom concept: an unusual ribosomal RNA from Giardia lamblia
92. The evolutionary origin of organelles
93. Guide RNA tails of the unexpected
94. Kinetoplast DNA of Bodo caudatus: a noncatenated structure
95. Why kinetoplast DNA networks?
96. Group I introns as mobile genetic elements: facts and mechanistic speculations – a review
97. Expression of a bacterial gene in a trypanosomatid protozoan
98. Targeted insertion of the neomycin phosphotransferase gene into the tubulin gene cluster of Trypanosoma brucei