Dna sequencing by hybridization to oligonucleotide matrix. Calculation of continuous stacking hybridization efficiency

Journal of Biomolecular Structure and Dynamics

Volumn 11, Issue 4, 1994, Pages 797-812

  Lysov, Yu P ^a   Chernyi, A A ^a   Balaeff, A A ^a   Beattie, K L ^b   Mirzabekov, A D ^a  

^a ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^b HOUSTON ADVANCED RESEARCH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA FRAGMENT; OLIGONUCLEOTIDE;

ALGORITHM; ARTICLE; BASE PAIRING; DNA DETERMINATION; DNA HYBRIDIZATION; DNA SEQUENCE; DNA STRAND; DNA STRUCTURE; PRIORITY JOURNAL; STRUCTURE ANALYSIS;

ALGORITHMS; BASE SEQUENCE; DNA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HYBRIDIZATION; OLIGODEOXYRIBONUCLEOTIDES; SEQUENCE ANALYSIS, DNA; SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, P.H.S.;

EID: 0028199617     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1994.10508033     Document Type: Article

References (15)

1. Drmanac, R., Labat, L., Brukner, I. and Crkvenjakov, R., “Sequencing of megabase plus DNAby hybridization: Theory of the method”, Genomics 4, 114-128 (1989).
2. Strezoska, Z., Paunesku, T., Radosavljevic, D., Labat, I., Drmanac, R. and Crkvenjakov, R., “DNA sequencing by hybridization: 100 bases read by a non-gel-based method”, Proc. Natl. Acad. Sci. USA., 10089-10093 (1991).
3. Bains, W. and Smith, G.C., “A novel method for nucleic acid sequence determination”, J. Theor. Biol. 135, 303-307 (1988).
4. Khrapko, K.R., Lysov, Yu.P., Khorlin, A.A, Shick, V.V., Florentiev, V.L. and Mirzabekov, A.D, “An oligonucleotide hybridization approach to DNA sequencing”, FEBS Lett. 256, 118-122 (1989).
5. Khrapko, K.R., Lysov, Yu.P., Khorlin, A.A, Ivanov, I.B., Yershov, G.M., Vasilenko, S.K., Florentiev, V.L. and Mirzabekov, AD., “A method for DNA sequencing by hybridization with oligonucleotide matrix”, DNA Sequence 1, 375-388 (1991).
6. Lysov, Yu.P., Florentiev, V.L., Khorlyn, A.A, Khrapko, K.R., Shick, V.V. and Mirzabekov, A.D., “DNA sequencing by hybridization with oligonucleotides. A novel method”, Dokl. Akad. Nauk SSSR 303, 1508-1511 (1988).
7. Southern, E.M., Maskos, U. and Elder, J.K., “Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: Evaluation using experimental models”. Genomics 13, 1008-1017 (1992).
8. Pevzner PA, “l-tuple DNA sequencing: Computer analysis”, J. Biomol. Struct Dyn. 7, 63-73 (1989).
9. Lysov, Yu. P., Khrapko, K.R., Cheenyi, A.A, Khorlin, A.A, Florentiev, V.L. and Mirzabekov, A.D., “DNA sequencing by oligonucleotide hybridization”, First International Conf. on Electrophoresis, Supercomputing and the Human Genom Tallahassee, 157-163 (1990).
10. Bains, W., “Hybridization methods for DNA sequencing”. Genomics 11, 294-301 (1991).
11. Pevzner, P.A, Lysov, Yu.P., Khrapko, K.R., Belyavsky, AV., Florentiev, V.L. and Mirzabekov, AD., ‘Improved chips for sequencing by hybridization”, J. Biomol. Struct. Dyn. 9, 399-410 (1991).
12. Pevzner, P.A and Lipshutz, R.J., “Towards DNA sequencing by hybridization”, (submitted) (1993).
13. Kieleczawa, J., Dunn, J.J. and Studier, F.W., “DNA sequencing by primer walking with string of contiguous hexamers”, Science 258, 1787-1792 (1992).
14. Khorlin, A.A, Khrapko, K.R., Ivanov, I.B., Lysov, Yu. P., Yershov, G.M., Vasilenko, S.K., Florentiev, V.L. and Mirzabekov, A.D., “An oligonucleotide matrix hybridization approach to DNA sequencing”, Nucleic Acids Res. 24, 191-192 (1991).
15. Kotler, L.E., Zevin-Sonkin, D., Sobolev, I.A, Beskin, A.D. and Ulanovsky L.E., “DNA sequencing: Modular primers assembled from a library of hexamers or pentamers”, Proc. Natl. Acad. Sci. USA 90, 4241-4245 (1993).