Arrangement of Messenger RNA on Escherichia coli Ribosomes with Respect to 10 16S rRNA Cross-Linking Sites

Biochemistry

Volumn 33, Issue 10, 1994, Pages 3063-3070

  Bhangu, Raman ^a   Juzumiene, Dalia ^a,b,c   Wollenzien, Paul ^a,b  

^a S LOUIS UNIV HLTH SCIENCES CENTER   (United States)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

^c LITHUANIAN ACADEMY OF SCIENCES   (Lithuania)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RNA 16S;

ARTICLE; CROSS LINKING; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; RIBOSOME; RNA ANALYSIS; RNA STRUCTURE;

BASE SEQUENCE; BINDING SITES; CODON; CROSS-LINKING REAGENTS; ELECTROPHORESIS, AGAR GEL; ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; RIBOSOMES; RNA, MESSENGER; RNA, RIBOSOMAL, 16S; RNA, TRANSFER, GLY; SUPPORT, U.S. GOV'T, NON-P.H.S.; SUPPORT, U.S. GOV'T, P.H.S.; THIOURIDINE;

EID: 0028196987     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi00176a040     Document Type: Article

References (40)

1. Bakin, A. V., Borisova, O. F., Shatsky, I. N., & Bogdanov, A. A. (1991) J. Mol. Biol. 221, 441–453.
2. Bergstrom, D. E., & Leonard, N. J. (1972) Biochemistry 11, 1–9.
3. Bhangu, R., & Wollenzien, P. L. (1992) Biochemistry 31, 5937–5944.
4. Brimacombe, R., Atmadja, J., Steige, W., & Schuler, D. (1988) J. Mol. Biol. 199, 115–136.
5. Capel, M. S., Engelman, D. M., Freeborn, B. R., Kjelkgaard, M., Langer, J. A., Ramakrishnan, V., Schindler, D. K., Schoenborn, B. P., Yabuki, S., & Moore, P. B. (1987) Science 238, 1403–1406.
6. Cooperman, S. (1980) in Ribosomes, Structure, Function, and Genetics (Chamblis, G., Craven, G. R., Davies, J., Davies, K., Kahan, L., & Nomura, M., Eds.) pp 531–554, University Park Press, Baltimore, MD.
7. Czworkowski, J., Odom, O. W., & Hardesty, B. (1991) Biochemistry 30, 4821–4830.
8. Dontsova, O., Kopylov, A., & Brimacombe, R. (1991) EMBO J. 10, 2613–2620.
9. Dontsova, O., Dokudovskaya, S., Kopylov, A., Bogdonov, A., Rinke-Appel, J., Junke, N., & Brimacombe, R. (1992) EMBO J. 11, 3105–3116.
10. Ericson, G., Chevli, K., & Wollenzien, P. (1989) Biochemistry 28, 6446–6454.
11. Evstafieva, A. G., Shatsky, I. N., Bogdanov, A. A., Semenkov, Y. P., & Vasiliev, V. D. (1983) EMBO J. 2, 799–804.
12. Expert-Bezancon, A., & Wollenzien, P. (1985) J. Mol. Biol. 184, 53–66.
13. Favre, A., Bezerra, R., Hajnsdorf, E., Lemairgre-Dubreuil, Y., & Expert-Bezancon, A. (1986) Eur. J. Biochem. 160, 379–385.
14. Gornicki, P., Nurse, K., Hellmann, W., Boublik, A. A., & Ofengand, J. (1984) J. Biol. Chem. 259, 10493–10498.
15. Hartz, D., McPheeters, D. S., & Gold, L. (1989) Genes Dev. 3, 1899–1912.
16. Hubbard, J., & Hearst, J. E. (1991) J. Mol. Biol. 221, 889–907.
17. Isaacs, S. T., Shen, C. K. J., Hearst, J. E., & Rapoport, H. (1977) Biochemistry 16, 1058–1064.
18. Kang, C., & Cantor, C. R. (1985) J. Mol. Biol. 181, 241–251.
19. Katunin, V. I., Semenkov, Yu. P., Mahkno, V. I., & Kirillov, S. V. (1980) Nucleic Acids Res. 8, 403–421.
20. Lemaigre-Dubreuil, Y., Expert-Bezancon, A., & Favre, A. (1991) Nucleic Acids Res. 19, 3653–3660.
21. Makhno, V. I., Pechin, N. N., Semenkov, Yu. P., & Kirillov, S. V. (1987) Mol. Biol. (Engl. Transl.) 22, 528–537.
22. Milligan, J. F., Groebe, D. R., Witherell, G. W., & Uhlenbeck, O. C. (1987) Nucleic Acids Res. 5, 8783–8798.
23. Moazed, D., & Noller, H. F. (1990) J. Mol. Biol. 211, 135–145.
24. Nagano, K., & Harel, M. (1988) J. Theor. Biol. 134, 199–256.
25. Noller, H. F. (1991) Annu. Rev. Biochem. 60, 191–227.
26. Oakes, M. I., Kahan, L., & Lake, J. A. (1990) J. Mol. Biol. 211, 897–906.
27. Olson, H. M., Lasater, L. S., Cann, P. A., & Glitz, D. G. (1988) J. Biol. Chem. 263, 15196–15204.
28. Ramakrishnan, V., & White, S, W. (1992) Nature 358, 768–111.
29. Rinke-Appel, J., Stade, K., & Brimacombe, R. (1991) EMBO. J. 10, 2195–2202.
30. Spirin, A. S., & Vasiliev, V. D. (1989) Biol. Cell 66, 215–223.
31. Stade, K., Rinke-Appel, J., & Brimacombe, R. (1989) Nucleic Acids Res. 17, 9889–9908.
32. Stern, S., Wilson, R. C., & Noller, H. F. (1986) J. Mol. Biol. 192, 101–110.
33. Stern, S., Weiser, B., & Noller, H. F. (1988) J. Mol. Biol. 204, 447–481.
34. Tanner, N. K., Hanna, M. M., & Abelson, J. (1988) Biochemistry 27, 8852–8861.
35. Tate, W., Greuer, B., & Brimacombe, R. (1990) Nucleic Acids Res. 18, 6537–6544.
36. Trempe, M. R., Oghi, K., & Glitz, D. G. (1982) J. Biol. Chem. 257, 9822–9829.
37. Tuerk, C., & Gold, L. (1990) Science 249, 505–510.
38. Vladimirov, S. N., Babkina, G. T., Venijaminova, A. G., Ginautdinova, O. I., Zenkova, M. A., & Karpova, G. G. (1990) Biochim. Biophys. Acta 1048, 245–256.
39. Wollenzien, P. (1988) Methods Enzymol. 164, 319–329.
40. Wollenzien, P., Expert-Bezancon, A., & Favre, A. (1991) Biochemistry 30, 1788–1795.