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Volumn 244, Issue 1, 1994, Pages 74-85

Mutational and structural analysis of the RNA binding site for Escherichia coli ribosomal protein S7

Author keywords

16 S ribosomal RNA; Ribosomal protein S7; RNA protein interactions; Site directed mutagenesis

Indexed keywords


EID: 0028116824     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1994.1705     Document Type: Article
Times cited : (25)

References (46)
  • 1
    • 0026045893 scopus 로고
    • HIVT-1 rev regulation involves recognition of non-Watson-Crick base pairs in viral RXA
    • T-1 rev regulation involves recognition of non-Watson-Crick base pairs in viral RXA. Cell, 67, 529-536.
    • (1991) Cell , vol.67 , pp. 529-536
    • Bartel, D.P.1    Zapp, M.L.2    Green, M.R.3    Szostak, S.4
  • 4
    • 0026635866 scopus 로고
    • The mRNA binding track in the Escherichia colt ribosome for niRNAs of different sequences
    • Bhangu R. & Wollenzien P (1992). The mRNA binding track in the Escherichia colt ribosome for niRNAs of different sequences. Biochemistry. 31, 5937-5944.
    • (1992) Biochemistry , vol.31 , pp. 5937-5944
    • Bhangu, R.1    Wollenzien, P.2
  • 5
    • 0028196987 scopus 로고
    • Juzumiene. D. & Wollenzien, R
    • Bhangu, P., Juzumiene. D. & Wollenzien, R (1994). Arrangement of messenger RNA on Escherichia coli ribosomes with respect to 10 16 S rRNA cross-linking sites. Biochemistry, 33, 3063-3070.
    • (1994) Biochemistry , vol.33 , pp. 3063-3070
    • Bhangu, P.1
  • 6
    • 0026041829 scopus 로고
    • RNA-protein interactions in the Escherichia coli ribosome
    • Brimacombe, R. (1991). RNA-protein interactions in the Escherichia coli ribosome. Biochimie, 73, 927-936.
    • (1991) Biochimie , vol.73 , pp. 927-936
    • Brimacombe, R.1
  • 7
    • 0024278056 scopus 로고
    • A detailed model of the three-dimensional structure of Escherichia coli 16 S ribosomal RNA in situ in the 30 S subunit
    • Brimacombe R, Atmadja, J., Stiege, W. & Schuler, D. (1988). A detailed model of the three-dimensional structure of Escherichia coli 16 S ribosomal RNA in situ in the 30 S subunit. J. Mol. Biol. 199, 115-136.
    • (1988) J. Mol. Biol. , vol.199 , pp. 115-136
    • Brimacombe, R.1    Atmadja, J.2    Stiege, W.3    Schuler, D.4
  • 9
    • 0024232285 scopus 로고
    • Enzymatic and chemical probing of ribosomal RNA-protein interactions
    • Christiansen J. & Garrett, R. (1988). Enzymatic and chemical probing of ribosomal RNA-protein interactions. Methods Enzymol. 164, 456-468.
    • (1988) Methods Enzymol , vol.164 , pp. 456-468
    • Christiansen, J.1    Garrett, R.2
  • 11
    • 0025911842 scopus 로고
    • The location of mRNA in the ribosomal 30 S initiation complex; site-directed cross-linking of mRNA analogues carrying several photo-reactive labels simultaneously on either side of the AUG start codon
    • Donstova, O, Kopylov, A. & Brimacombe, R. (1991). The location of mRNA in the ribosomal 30 S initiation complex; site-directed cross-linking of mRNA analogues carrying several photo-reactive labels simultaneously on either side of the AUG start codon. EM BO J. 10, 2613-2620.
    • (1991) EM BO J , vol.10 , pp. 2613-2620
    • Donstova, O.1    Kopylov, A.2    Brimacombe, R.3
  • 12
    • 0027312374 scopus 로고
    • Interaction of Escherichia coli ribosomal protein S7 with 16 S rRNA
    • Dragon, E & Brakier-Gingras, L. (1993). Interaction of Escherichia coli ribosomal protein S7 with 16 S rRNA. Nucl Acids Res. 21, 1199-1203
    • (1993) Nucl Acids Res , vol.21 , pp. 1199-1203
    • Dragon, E.1    Brakier-Gingras, L.2
  • 13
    • 0024395371 scopus 로고
    • How do proteins recognize specific RNA sites? New clues from autogenously regulated ribosomal proteins
    • Draper, D. E. (1989). How do proteins recognize specific RNA sites? New clues from autogenously regulated ribosomal proteins. Trends Biochem. Sc/i. 14, 335-338.
    • (1989) Trends Biochem. Sc/I. , vol.14 , pp. 335-338
    • Draper, D.E.1
  • 14
    • 0002609465 scopus 로고
    • Structure and function of ribosomal protein-RNA complexes: Thermodynamic studies
    • Hill, W. E., Dahl berg, A., Garrett, R. A., Moore, P B., Schlessinger, D. & Warner, J. R., American Society for Microbiology Press, Washington DC
    • Draper, D. E. (1990). Structure and function of ribosomal protein-RNA complexes: thermodynamic studies. In The Ribosome: Structure, Function and Evolution (Hill, W. E., Dahl berg, A., Garrett, R. A., Moore, P B., Schlessinger, D. & Warner, J. R., eds), pp. 160-167, American Society for Microbiology Press, Washington DC.
    • (1990) The Ribosome: Structure, Function and Evolution , pp. 160-167
    • Draper, D.E.1
  • 16
    • 0023645139 scopus 로고
    • Structure and accessibility of domain I of Escherichia coli 23 S RNA in free RNA, in the L24-RNA complex and in 50 S subunits. Implications for ribosomal assembly
    • Egebjerg, J., Leffers, H., Christensen, A., Andersen, H. & Garrett, R. A. (1987). Structure and accessibility of domain I of Escherichia coli 23 S RNA in free RNA, in the L24-RNA complex and in 50 S subunits. Implications for ribosomal assembly. J. Mol Biol 196, 125-136.
    • (1987) J. Mol Biol , vol.196 , pp. 125-136
    • Egebjerg, J.1    Leffers, H.2    Christensen, A.3    Ersen, H.4    Garrett, R.A.5
  • 17
    • 0024327703 scopus 로고
    • Protein L18 binds primarily at the junctions of helix II and internal loops A and B in Escherichia coli 5 S RNA. Implications for 5 S RNA structure
    • Egebjerg, J., Christiansen, J., Brown, R. S., Larsen, N. & Garrett, R. A. (1989). Protein L18 binds primarily at the junctions of helix II and internal loops A and B in Escherichia coli 5 S RNA. Implications for 5 S RNA structure. J. Mol Biol 206, 651-668.
    • (1989) J. Mol Biol , vol.206 , pp. 651-668
    • Egebjerg, J.1    Christiansen, J.2    Brown, R.S.3    Larsen, N.4    Garrett, R.A.5
  • 18
    • 0026409151 scopus 로고
    • Attachment sites of primary binding proteins LI, L2, and L23 on 23 S ribosomal RNA of
    • Egebjerg, J., Christiansen, J. & Garrett, R, A. (1991). Attachment sites of primary binding proteins LI, L2, and L23 on 23 S ribosomal RNA of Escherichia coli. J. Mol Biol 222, 251-264.
    • (1991) Escherichia Coli. J. Mol Biol , vol.222 , pp. 251-264
    • Egebjerg, J.1    Christiansen, J.2    Garrett, R.3
  • 19
    • 0026320070 scopus 로고
    • RNA-protein interactions
    • Frankel, A. D, Mattaj, I. W. & Rio, D. C. (1991). RNA-protein interactions. Cell, 67, 1041-1046.
    • (1991) Cell , vol.67 , pp. 1041-1046
    • Frankel, A.D.1    Mattaj, I.W.2    Rio, D.C.3
  • 20
    • 0024270439 scopus 로고
    • Interaction of Escherichia coli ribosomal protein S8 with its binding sites in ribosomal RNA and messenger RNA
    • Gregory, R. J., Cahill, P B. E, Thurlow, D. L. & Zimmermann, R.A. (1988). Interaction of Escherichia coli ribosomal protein S8 with its binding sites in ribosomal RNA and messenger RNA. J. Mol Biol. 204, 295-307.
    • (1988) J. Mol Biol. , vol.204 , pp. 295-307
    • Gregory, R.J.1    Cahill, P.2    Thurlow, D.L.3    Zimmermann, R.A.4
  • 21
    • 0025191217 scopus 로고
    • Higher order structural elements in ribosomal R NAs: Pseudo-knots and the use of noncanonical pairs. Proc. Nat. Acad. Sci
    • Gutell E R. & Woese, C. R. (1990). Higher order structural elements in ribosomal R NAs: pseudo-knots and the use of noncanonical pairs. Proc. Nat. Acad. Sci., U.S.A. 87, 663-667.
    • (1990) U.S.A. , vol.87 , pp. 663-667
    • Gutell, E.R.1    Woese, C.R.2
  • 22
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16 S and 23 S rRNA structures from a comparative perspective
    • Gutell, R. R., Larsen, N. & Woese, C. R. (1994). Lessons from an evolving rRNA: 16 S and 23 S rRNA structures from a comparative perspective. Microbiol. Rev. 58, 10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 23
    • 0016153699 scopus 로고
    • Assembly mapping of 30 S ribosomal proteins from Escherichia coli
    • Held, W A., Ballou, B., Mizushima, B. & Nomura, M. (1974). Assembly mapping of 30 S ribosomal proteins from Escherichia coli., J. Biol Ghem. 249, 3103-3111.
    • (1974) J. Biol Ghem. , vol.249 , pp. 3103-3111
    • Held, W.A.1    Ballou, B.2    Mizushima, B.3    Nomura, M.4
  • 24
    • 0000847266 scopus 로고
    • Ribosomes and tRNA
    • Neid-hardt, F. C., Ingraham, J. L. Low, K. B., Magasanik, B., Schaeehter, M. & Um barge r, H. E., American Society for Microbiology Press, Washington DC
    • Jinks-Robertson, S. & Nomura, M. (1987). Ribosomes and tRNA. In Escherichia coli and Salmonella ty-phimurium: Cellular and Molecular Biology (Neid-hardt, F. C., Ingraham, J. L. Low, K. B., Magasanik, B., Schaeehter, M. & Um barge r, H. E., eds), pp. 1358-1385, American Society for Microbiology Press, Washington DC.
    • (1987) Escherichia Coli and Salmonella Ty-Phimurium: Cellular and Molecular Biology , pp. 1358-1385
    • Jinks-Robertson, S.1    Nomura, M.2
  • 25
    • 0023613953 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel, T. A., Roberts, J. D. & Zakour, R. A. (1987). Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol 154, 367-382.
    • (1987) Methods Enzymol , vol.154 , pp. 367-382
    • Kunkel, T.A.1    Roberts, J.D.2    Zakour, R.A.3
  • 26
    • 0022973884 scopus 로고
    • On the recognition of helical RNA by cobra venom V, nuclease
    • Lowman, H. B. & Draper, D. E. (1986). On the recognition of helical RNA by cobra venom V, nuclease. J. Biol Ghem. 261, 5396-5403.
    • (1986) J. Biol Ghem. , vol.261 , pp. 5396-5403
    • Lowman, H.B.1    Draper, D.E.2
  • 27
    • 0024849315 scopus 로고
    • Protein-induced conformational changes in 16 S ribosomal RNA during the initial assembly steps of Escherichia coli 30 S ribosomal subunit
    • Mandiyan, V, Tumminia, S., Wall, J. S., Hainfeld, J. F & Boublik, M. (1989). Protein-induced conformational changes in 16 S ribosomal RNA during the initial assembly steps of Escherichia coli 30 S ribosomal subunit. J. Mol Biol. 210, 323-336.
    • (1989) J. Mol Biol. , vol.210 , pp. 323-336
    • Mandiyan, V.1    Tumminia, S.2    Wall, J.S.3    Hainfeld, J.F.4    Boublik, M.5
  • 28
    • 0025070318 scopus 로고
    • Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA
    • Moazed, D. & Noller, H. E (1990). Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA. J. Mol. Biol 211, 135-145.
    • (1990) J. Mol. Biol , vol.211 , pp. 135-145
    • Moazed, D.1    Noller, H.E.2
  • 29
    • 0023688660 scopus 로고
    • Assembly of the 30 S subunit from Escherichia coli ribosomes occurs via two assembly domains which are initiated by 84 and S7
    • Nowotny, V & Nierhaus, K. H. (1988). Assembly of the 30 S subunit from Escherichia coli ribosomes occurs via two assembly domains which are initiated by 84 and S7. Biochemistry, 27, 7051-7055.
    • (1988) Biochemistry , vol.27 , pp. 7051-7055
    • Nowotny, V.1    Nierhaus, K.H.2
  • 30
    • 0024292399 scopus 로고
    • Probing the assembly of the 3' major domain of 16 S ribosomal RNA. Quaternary interactions involving ribosomal proteins 87, S9 and S19
    • Powers, T., Changchien, L.-M., Craven, G. R. & Noller, H. E (1988). Probing the assembly of the 3' major domain of 16 S ribosomal RNA. Quaternary interactions involving ribosomal proteins 87, S9 and S19. J. Mol. Biol 200, 309-319.
    • (1988) J. Mol. Biol , vol.200 , pp. 309-319
    • Powers, T.1    Changchien, L.-M.2    Craven, G.R.3    Noller, H.E.4
  • 32
    • 0022432322 scopus 로고
    • Characterization of the RNA binding properties of transcription factor 111A of Xenopus laevis oocytes
    • Roinaniuk P J. (1985). Characterization of the RNA binding properties of transcription factor 111A of Xenopus laevis oocytes. Nucl. Acids Res. 13, 5369-5387.
    • (1985) Nucl. Acids Res. , vol.13 , pp. 5369-5387
    • Roinaniuk, P.J.1
  • 33
    • 0025999688 scopus 로고
    • Recognition of the highly conserved GTPase center of 23 S ribosomal RNA by ribosomal protein Lll and the antibiotic thiostrepton
    • Ryan, P C., Lu, M. & Draper, D. E. (1991). Recognition of the highly conserved GTPase center of 23 S ribosomal RNA by ribosomal protein Lll and the antibiotic thiostrepton. J. Mol Biol. 221, 1257-1268.
    • (1991) J. Mol Biol. , vol.221 , pp. 1257-1268
    • Ryan, P.C.1    Lu, M.2    Draper, D.E.3
  • 34
    • 0028011140 scopus 로고
    • Post-transcriptional regulation of the str operon in Escherichia coli. Structural and mutational analysis of the target site for translational repressor 87
    • Saito, K. & Nomura, M. (1994). Post-transcriptional regulation of the str operon in Escherichia coli. Structural and mutational analysis of the target site for translational repressor 87. J. Mol Biol. 235, 125-139.
    • (1994) J. Mol Biol. , vol.235 , pp. 125-139
    • Saito, K.1    Nomura, M.2
  • 36
    • 0026081968 scopus 로고
    • A rapid method for the purification of deprotected oligodeoxynuele-otides
    • Sawadogo, M. & Van Dyke, M. W. (1991). A rapid method for the purification of deprotected oligodeoxynuele-otides. Nucl. Acids Res. 19, 674.
    • (1991) Nucl. Acids Res. , vol.19 , pp. 674
    • Sawadogo, M.1    Van Dyke, M.W.2
  • 37
    • 0019444687 scopus 로고
    • Apparent association constants for E. Coli ribosomal proteins S4, 87. 88, S15, SI7 and 820 binding to 16 S RNA
    • Sehwarzbauer, J. & Craven, G. R. (1981). Apparent association constants for E. coli ribosomal proteins S4, 87. 88, S15, SI7 and 820 binding to 16 S RNA. Nucl Acids Res. 9, 2223-2237.
    • (1981) Nucl Acids Res , vol.9 , pp. 2223-2237
    • Sehwarzbauer, J.1    Craven, G.R.2
  • 39
    • 0024241761 scopus 로고
    • Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
    • Stern, S., Moazed, D. & Nollcr, H. E (1988a). Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol. 164, 481 489.
    • (1988) Methods Enzymol , vol.164 , Issue.481 , pp. 489
    • Stern, S.1    Moazed, D.2    Nollcr, H.E.3
  • 40
    • 0024293439 scopus 로고
    • Model for the three-dimensional folding of 16 S ribosomal RNA. J. Mol
    • Stern, S., Weiser, B. & Noller H E (1988). Model for the three-dimensional folding of 16 S ribosomal RNA. J. Mol. Biol. 204, 447 481.
    • (1988) Biol. 204 , vol.447 , pp. 481
    • Stern, S.1    Weiser, B.2    Noller, H.E.3
  • 43
    • 0024580995 scopus 로고
    • Effects of single-base bulges on interealator binding to small RNA and DXA hairpins and a ribosomal RNA fragment
    • White, S. A. & Draper, I E. (1989). Effects of single-base bulges on interealator binding to small RNA and DXA hairpins and a ribosomal RNA fragment. Biochemistry, 28, 1892 1897.
    • (1989) Biochemistry , vol.28 , Issue.1892 , pp. 1897
    • White, S.A.1    Draper, I.E.2
  • 44
    • 0025047647 scopus 로고
    • Architecture of ribosomal RNA. Constraints on the sequence of “tetra-loops”
    • Woese, C. R., Winker, S. & Iutell, R. R. (1990). Architecture of ribosomal RNA. Constraints on the sequence of “tetra-loops”. Proc. Nat. Acad. Set., U.S.A. 87, 8467 8471.
    • (1990) Proc. Nat. Acad. Set., U.S.A. , vol.87 , Issue.8467 , pp. 8471
    • Woese, C.R.1    Winker, S.2    Iutell, R.R.3
  • 45
    • 0025127670 scopus 로고
    • The effects of disrupting 5 S RNA helical structures on the binding of Xenopus transcription factor 111A
    • You, Q. & Romaniuk, P J. (1990). The effects of disrupting 5 S RNA helical structures on the binding of Xenopus transcription factor 111A. Nucl. Acids Res. 18, 5055-5062.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 5055-5062
    • You, Q.1    Romaniuk, P.J.2
  • 46
    • 0025760054 scopus 로고
    • Rapid and simple purification of T7 RNA polymerase
    • Zawadzki, V & Gross, H. J. (1991). Rapid and simple purification of T7 RNA polymerase. Nucl. Acids Res. 19, 1948.
    • (1991) Nucl. Acids Res. , vol.19 , pp. 1948
    • Zawadzki, V.1    Gross, H.J.2


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