메뉴 건너뛰기




Volumn 244, Issue 5, 1994, Pages 572-585

Bases defining an ammonium and magnesium ion-dependent tertiary structure within the large subunit ribosomal RNA

Author keywords

Compensatory base changes; Phylogenetic comparisons; Protein RNA recognition; Thermal denaturation

Indexed keywords


EID: 0028102703     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1994.1753     Document Type: Article
Times cited : (65)

References (34)
  • 1
    • 0027434244 scopus 로고
    • Thermal unfolding of a group I ribozyme: The low-temperature transition is primarily disruption of tertiary structure
    • Banerjee, A. R., Jaeger, J. A. & Turner, D. H., (1993). Thermal unfolding of a group I ribozyme: the low-temperature transition is primarily disruption of tertiary structure. Biochemistry, 32, 153-163.
    • (1993) Biochemistry , vol.32 , pp. 153-163
    • Banerjee, A.R.1    Jaeger, J.A.2    Turner, D.H.3
  • 3
    • 0015497450 scopus 로고
    • Conformational changes of transfer ribonucleic acid. Equilibrium phase diagrams
    • Cole, E E., Yang, S. K. & Crothers, D. M. (1972). Conformational changes of transfer ribonucleic acid. Equilibrium phase diagrams. Biochemistry, 11, 4358-4368.
    • (1972) Biochemistry , vol.11 , pp. 4358-4368
    • Cole, E.E.1    Yang, S.K.2    Crothers, D.M.3
  • 4
    • 0016169138 scopus 로고
    • The molecular mechanism of thermal unfolding of Escherichia coli formylmethionine transfer RNA
    • Crothers, D. M., Cole, E E., Hilbers, C. W. & Shulman, R, G. (1974). The molecular mechanism of thermal unfolding of Escherichia coli formylmethionine transfer RNA. J. Mol. Biol 87, 63-88.
    • (1974) J. Mol. Biol , vol.87 , pp. 63-88
    • Crothers, D.M.1    Cole, E.E.2    Hilbers, C.W.3    Shulman, R.4
  • 5
    • 0002241318 scopus 로고
    • Involvement of specific portions of ribosomal RNA in defined ribosomal functions: A study utilizing antibiotics
    • Hardesty, B. & Kramer, G., Springer-Verlag, New York
    • CuncUiffe, E. (1986). Involvement of specific portions of ribosomal RNA in defined ribosomal functions: a study utilizing antibiotics. In Structure, Function, and Genetics of Ribosomes (Hardesty, B. & Kramer, G., eds), pp. 586-604, Springer-Verlag, New York.
    • (1986) Structure, Function, and Genetics of Ribosomes , pp. 586-604
    • Cuncuiffe, E.1
  • 6
    • 8944220932 scopus 로고
    • Recognition sites for antibiotics within rRNA
    • Hill, W, Dahlberg, A., Garrett, R. A., Moore, E B., Schlessinger, D. & Warner, J., American Society for Microbiology, Washington, D.C
    • Cundliffe, E, (1990). Recognition sites for antibiotics within rRNA. In The Structure, Function, and Evolution of Ribosomes (Hill, W, Dahlberg, A., Garrett, R. A., Moore, E B., Schlessinger, D. & Warner, J., eds), pp. 160-167, American Society for Microbiology, Washington, D.C.
    • (1990) The Structure, Function, and Evolution of Ribosomes , pp. 160-167
    • Cundliffe, E.1
  • 7
    • 0019483431 scopus 로고
    • Concerning the mode of action of micrococcin upon bacterial protein synthesis
    • Cundliffe, E. & Thompson, J. (1981a). Concerning the mode of action of micrococcin upon bacterial protein synthesis. Eur. J. Biochem. 118, 47-52.
    • (1981) Eur. J. Biochem. , vol.118 , pp. 47-52
    • Cundliffe, E.1    Thompson, J.2
  • 8
    • 0019857109 scopus 로고
    • The mode of action of nosiheptide (Multhiomycin) and the mechanism of resistance in the producing organism
    • Cundliffe, E. & Thompson, J. (1981). The mode of action of nosiheptide (multhiomycin) and the mechanism of resistance in the producing organism. J. Gen. Microbiol. 126, 185-192.
    • (1981) J. Gen. Microbiol. , vol.126 , pp. 185-192
    • Cundliffe, E.1    Thompson, J.2
  • 12
    • 0026466830 scopus 로고
    • Identifying constraints on the higher-order structure of RNA: Continued development and application of comparative sequence analysis methods
    • Gutell, R. R., Power, A., Hertz, G. Z., Putz, E. J. & Stormo, G. D. (1992a). Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. Nucl. Acids Res. 20, 5785-5795.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 5785-5795
    • Gutell, R.R.1    Power, A.2    Hertz, G.Z.3    Putz, E.J.4    Stormo, G.D.5
  • 13
    • 0026539417 scopus 로고
    • A compilation of large subunit (23 S and 23 S-like) ribosomal RNA structures
    • Gutell, R. R., Schnare, M. N. & Gray, M. W. (1992). A compilation of large subunit (23 S and 23 S-like) ribosomal RNA structures. Nucl. Acids Res. 20 (Suppl.) 2095-2109.
    • (1992) Nucl. Acids Res , vol.20 , pp. 2095-2109
    • Gutell, R.R.1    Schnare, M.N.2    Gray, M.W.3
  • 14
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16 S and 23 S rRNA structures from a comparative perspective
    • Toese, C. R. (1994). Lessons from an evolving rRNA: 16 S and 23 S rRNA structures from a comparative perspective. Microbiol. Rev. 58, 10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 16
    • 0026490428 scopus 로고
    • Functional compensation of a recognition-defective transfer RNA by a distal base pair substitution
    • Hou, Y.-M. & Schimmel, E (1992). Functional compensation of a recognition-defective transfer RNA by a distal base pair substitution. Biochemistry, 31, 10310-10314.
    • (1992) Biochemistry , vol.31 , pp. 10310-10314
    • Hou, Y.-M.1    Schimmel, E.2
  • 17
    • 0027433710 scopus 로고
    • Monitoring of the cooperative unfolding of the sunY group 1 intron of bacteriophage T4. The active form of the swnY ribozyme is stabilized by multiple interactions with 3' terminal intron components
    • Jaeger, L., Westhof, E. & Michel, F. (1993). Monitoring of the cooperative unfolding of the sunY group 1 intron of bacteriophage T4. The active form of the swnY ribozyme is stabilized by multiple interactions with 3' terminal intron components. J. Mol. Biol. 234, 331-346.
    • (1993) J. Mol. Biol. , vol.234 , pp. 331-346
    • Jaeger, L.1    Westhof, E.2    Michel, F.3
  • 18
    • 0028234517 scopus 로고
    • Thermodynamics of RNA folding in a highly conserved ribosomal RNA domain
    • Laing, L. G. & Draper, D. E. (1994). Thermodynamics of RNA folding in a highly conserved ribosomal RNA domain. J. Mol. Biol. 237, 560-576.
    • (1994) J. Mol. Biol. , vol.237 , pp. 560-576
    • Laing, L.G.1    Draper, D.E.2
  • 19
  • 20
    • 0014031183 scopus 로고
    • ). Nucleotide sequence of a yeast tyrosine transfer RNA
    • Madison, J T., Everett, G. A. & Kung, H. (1966). Nucleotide sequence of a yeast tyrosine transfer RNA. Science, 153, 531-534.
    • (1966) Science , vol.153 , pp. 531-534
    • Madison, J.T.1    Everett, G.A.2    Kung, H.3
  • 21
    • 0023430560 scopus 로고
    • Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding
    • Matthews, B. W, Nicholson, H. & Becktel, W. J. (1987). Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding. Proc. Nat. Acad. Sci., U.S.A. 84, 6663-6667.
    • (1987) Proc. Nat. Acad. Sci., U.S.A. , vol.84 , pp. 6663-6667
    • Matthews, B.W.1    Nicholson, H.2    Becktel, W.J.3
  • 22
    • 0026016509 scopus 로고
    • The conserved GTPase center and variable region V9 from Saccha-romyces cerevisiae 26 S rRNA can be replaced by their equivalents from other prokaryotes or eukaryotes without detectable loss of ribosomal function
    • Musters, W, Gonsalves, EM., Boon, K., Raue, H. A., van Heerikhuizen, H. & Planta, R. J. (1991). The conserved GTPase center and variable region V9 from Saccha-romyces cerevisiae 26 S rRNA can be replaced by their equivalents from other prokaryotes or eukaryotes without detectable loss of ribosomal function. Proc. Nat Acad. Sci., U.S.A. 88, 1469-1473.
    • (1991) Proc. Nat Acad. Sci., U.S.A. , vol.88 , pp. 1469-1473
    • Musters, W.1    Gonsalves, E.M.2    Boon, K.3    Raue, H.A.4    Van Heerikhuizen, H.5    Planta, R.J.6
  • 23
    • 0016912825 scopus 로고
    • Transfer RNA: Molecular structure, sequence, and properties
    • Rich, A. & RajBhandary, U. L. (1976). Transfer RNA: molecular structure, sequence, and properties. Annu. Rev. Biochem. 45, 805-860.
    • (1976) Annu. Rev. Biochem. , vol.45 , pp. 805-860
    • Rich, A.1    Rajbhandary, U.L.2
  • 24
    • 0027732617 scopus 로고
    • Ribosomal proteins Lll and L10.(L12)4 and the antibiotic thiostrepton interact with overlapping regions of the 23 S rRNA backbone in the ribosomal GTPase centre
    • 4 and the antibiotic thiostrepton interact with overlapping regions of the 23 S rRNA backbone in the ribosomal GTPase centre. J. Mol. Biol. 234, 1013-1020.
    • (1993) J. Mol. Biol. , vol.234 , pp. 1013-1020
    • Rosendahl, G.1    Douthwaite, S.2
  • 25
    • 0025807847 scopus 로고
    • Detection of a key tertiary interaction in the highly conserved GTPase center of large subunit ribosomal RNA
    • Ryan, E C. & Draper, D. E. (1991). Detection of a key tertiary interaction in the highly conserved GTPase center of large subunit ribosomal RNA. Proc. Nat. Acad. Sci, U.S.A. 88, 6308-6312.
    • (1991) Proc. Nat. Acad. Sci, U.S.A. , vol.88 , pp. 6308-6312
    • Ryan, E.C.1    Draper, D.E.2
  • 26
    • 0025999688 scopus 로고
    • Recognition of the highly conserved GTPase center of 23 S ribosomal RNA by ribosomal protein Lll and the antibiotic thiostrepton
    • Ryan, E C., Lu, M. & Draper, D. E. (1991). Recognition of the highly conserved GTPase center of 23 S ribosomal RNA by ribosomal protein Lll and the antibiotic thiostrepton. J. Mol. Biol. 221, 1257-1268.
    • (1991) J. Mol. Biol. , vol.221 , pp. 1257-1268
    • Ryan, E.C.1    Lu, M.2    Draper, D.E.3
  • 27
    • 0019175261 scopus 로고
    • Functional homology between E. Coli ribosomal protein Lll and B. Megaterium protein BM-L11
    • Stark, M. J. R., Cundliffe, E., Dijk, J. & Stoffler, G. (1980). Functional homology between E. coli ribosomal protein Lll and B. megaterium protein BM-L11. Mol. Gen. Genet. 180, 11-15.
    • (1980) Mol. Gen. Genet. , vol.180 , pp. 11-15
    • Stark, M.J.R.1    Cundliffe, E.2    Dijk, J.3    Stoffler, G.4
  • 28
    • 0017295709 scopus 로고
    • Conformational changes of transfer RNA. The role of magnesium(II)
    • Stein, A. & Crothers, D. M. (1976). Conformational changes of transfer RNA. The role of magnesium(II). Biochemistry, 15, 160-167.
    • (1976) Biochemistry , vol.15 , pp. 160-167
    • Stein, A.1    Crothers, D.M.2
  • 29
    • 0020419248 scopus 로고
    • Site of action of a ribosomal RNA methylase conferring resistance to thiostrepton
    • Thompson, J., Schmidt, F & Cundliffe, E. (1982). Site of action of a ribosomal RNA methylase conferring resistance to thiostrepton. J. Biol. Chem. 257, 7915-7917
    • (1982) J. Biol. Chem , vol.257 , pp. 7915-7917
    • Thompson, J.1    Schmidt, F.2    Cundliffe, E.3
  • 30
    • 0023689001 scopus 로고
    • Site-directed mutagenesis of E, coli 23 S ribosomal RNA at position 1067 within the GTP hydrolysis centre
    • Thompson, J., Cundliffe, E. & Dahlberg, A. E. (1988). Site-directed mutagenesis of E, coli 23 S ribosomal RNA at position 1067 within the GTP hydrolysis centre. J. Mol. Biol. 203, 457-465.
    • (1988) J. Mol. Biol. , vol.203 , pp. 457-465
    • Thompson, J.1    Cundliffe, E.2    Dahlberg, A.E.3
  • 31
    • 0027480627 scopus 로고
    • Replacement of the Lll binding region within E. Coli 23 S ribosomal RNA with its homologue from yeast: In vivo and in vitro analysis of hybrid ribosomes altered in the GTPase center
    • Thompson, J., Musters, W., Cundliffe, E. & Dahlberg, A. E. (1993). Replacement of the Lll binding region within E. coli 23 S ribosomal RNA with its homologue from yeast: in vivo and in vitro analysis of hybrid ribosomes altered in the GTPase center. Eur. J. Biochem. 12, 1499-1504.
    • (1993) Eur. J. Biochem. , vol.12 , pp. 1499-1504
    • Thompson, J.1    Musters, W.2    Cundliffe, E.3    Dahlberg, A.E.4
  • 32
    • 0027374419 scopus 로고
    • Specific ammonium ion requirement for functional ribosomal RNA tertiary structure
    • Wang, Y.-X., Du, M. & Draper, D. E. (1993). Specific ammonium ion requirement for functional ribosomal RNA tertiary structure. Biochemistry, 32, 12279-12282.
    • (1993) Biochemistry , vol.32 , pp. 12279-12282
    • Wang, Y.-X.1    Du, M.2    Draper, D.E.3
  • 34
    • 0016742178 scopus 로고
    • The nucleotide sequence of the 5S ribosomal RNA from a photobacterium
    • Woese, C. R„ Pribula C. D., Fox, G. E. & Zablen, L. B. (1975). The nucleotide sequence of the 5S ribosomal RNA from a photobacterium. J. Mol. Evol. 5, 35-36.
    • (1975) J. Mol. Evol. , vol.5 , pp. 35-36
    • Pribula, C.D.1    Fox, G.E.2    Zablen, L.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.