Vaccinia DNA Topoisomerase I: Single-Turnover and Steady-State Kinetic Analysis of the DNA Strand Cleavage and Ligation Reactions

Biochemistry

Volumn 33, Issue 1, 1994, Pages 327-339

  Stivers, James T ^a   Mildvan, Albert S ^a   Shuman, Stewart ^b  

^a JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE; DOUBLE STRANDED DNA; PHOSPHOROTHIOIC ACID;

ARTICLE; DISSOCIATION; DNA BINDING; DNA CLEAVAGE; DNA SUPERCOILING; MUTANT; NONHUMAN; PRIORITY JOURNAL; STEADY STATE; VACCINIA VIRUS;

BASE SEQUENCE; DNA; DNA TOPOISOMERASES, TYPE I; KINETICS; MATHEMATICS; MOLECULAR SEQUENCE DATA; OLIGODEOXYRIBONUCLEOTIDES; RECOMBINANT PROTEINS; SUBSTRATE SPECIFICITY; SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, P.H.S.; THERMODYNAMICS; VACCINIA VIRUS;

EID: 0028091124     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi00167a043     Document Type: Article

References (52)

1. Bartlett, P. A., & Marlowe, C. K. (1987) Biochemistry 26, 8553–8561.
2. Bryant, F. R., & Benkovic, S. J. (1979) Biochemistry 18, 2825–2828.
3. Burgen, A. S. V., Roberts, G. C. K., & Feeney, J. (1975) Nature 253, 753–755.
4. Burgers, P. M. J., & Eckstein, F. (1979) Biochemistry 18, 592–596.
5. Caserta, M., Amadei, A., Camilloni, G., & DiMauro, E. (1990) Biochemistry 29, 8152–8157.
6. Chaffee, E., Dasgupta, T. P., & Harris, G. M. (1973) J. Am. Chem. Soc. 95, 4169–4173.
7. Champoux, J. J. (1990) in DNA Topology and its Biological Effects (Cozzarelli, N. R., & Wang, J. C., Eds.) pp 217–242, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
8. Cleland, W. W. (1975) Biochemistry 14, 3220–3224.
9. Cohn, M., & Townsend, J. (1954) Nature 173, 1090–1091.
10. Eckstein, F. (1979) Acc. Chem. Res. 12, 204–210.
11. Eigen, M., & Hammes, G. G. (1963) Adv. Enzymol. Relat. Areas Mol. Biol. 25, 1–38.
12. Fersht, A. R. (1985) Enzyme Structure and Mechanism, 2nd ed., pp 143–144, W. H. Freeman & Co., New York.
13. Geliert, M. (1981) Annu. Rev. Biochem. 50, 879–910.
14. Griep, M. A., Reems, J. A., Franden, M. A., & McHenry, C. S. (1990) Biochemistry 29, 9006–9014.
15. Hammes, G. G. (1982) Enzymatic Catalysis and Regulation, pp 99–101, Academic Press, New York.
16. Herschlag, D., & Cech, T. R. (1990) Biochemistry 29, 10159–10171.
17. Herschlag, D., & Jencks, W. P. (1990) Biochemistry 29, 5172–5179.
18. Herschlag, D., Piccirilli, J. A., & Cech, T. R. (1991) Biochemistry 30, 4844–4854.
19. Holden, H. M., Tronrud, D. E., Monzingo, A. F., Weaver, L. H., & Mathews, B. W. (1987) Biochemistry 26, 8543–8553.
20. Jencks, W. P. (1969) Catalysis in Chemistry and Enzymology, 1st ed., pp 586–589, McGraw Hill, New York.
21. Johnson, K. A. (1986) Methods Enzymol. 134, 677–705.
22. Kirby, A. J., & Younas, M. (1970) J. Chem. Soc. B, 1165–1172.
23. Kornberg, A., & Baker, T. A. (1992) DNA Replication (2nd ed.) pp 379–401, W. H. Freeman, New York.
24. Kuchta, R. D., Mizrahi, V., Benkovic, P. A., Johnson, K. A., & Benkovic, S. J. (1987) Biochemistry 26, 8410–8417.
25. Lee, M. P., Brown, S. D., Chen, A., & Shieh, T. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 6656–6660.
26. Maniatis, T., Fritsch, E. I., & Sambrook, J. (1982) Molecular Cloning. A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
27. McCammon, J. A., & Northrup, S. H. (1981) Nature 293, 316–317.
28. McConaughty, B. L., Young, L. S., & Champoux, J. J. (1981) Biochim. Biophys. Acta 655, 1–8.
29. McSwiggen, J. A., & Cech, T. R. (1989) Science 244, 679–683.
30. Mildvan, A. S. (1992) FASEB J. 6, A266, Abstract 1537.
31. Mildvan, A. S., & Cohn, M. (1963) Biochemistry 2, 910–919.
32. Mizrahi, V., Henrie, R. N., Marlier, J. F., Johnson, K. A., & Benkovic, S. J. (1985) Biochemistry 24, 4010–4018.
33. Morham, S. G., & Shuman, S. (1992) J. Biol. Chem. 267, 15984–15992.
34. Patel, S. S., Wong, I., & Johnson, K. A. (1991) Biochemistry 30, 511–525.
35. Riggs, A. D., Suzuki, H., & Bourgeois, S. (1970) J. Mol. Biol. 48, 67–83.
36. Saenger, W. (1984) Principles of Nucleic Acid Structure, pp 201–219, Springer-Verlag, New York.
37. Schmitz, K. S., & Schurr, J. M. (1972) J. Phys. Chem. 76, 534–545.
38. Serpersu, E. H., Shortle, D., & Mildvan, A. S. (1987) Biochemistry 26, 1289–1300.
39. Shaffer, R., & Traktman, P. (1987) J. Biol. Chem. 262, 9309–9315.
40. Shuman, S. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 3489–3493.
41. Shuman, S. (1991a) J. Biol. Chem. 266, 1796–1803.
42. Shuman, S. (1991b) Proc. Natl. Acad. Sci. U.S.A. 88, 10104–10108.
43. Shuman, S. (1992) J Biol. Chem. 267, 8620–8627.
44. Shuman, S., & Moss, B. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 7478–7482.
45. Shuman, S., & Prescott, J. (1990) J. Biol. Chem. 265, 17826–17836.
46. Shuman, S., Golder, M., & Moss, B. (1988) J. Biol. Chem. 263, 16401–16407.
47. Shuman, S., Golder, M., & Moss, B. (1989a) Virology 170, 302–306.
48. Shuman, S., Kane, E. M., & Morham, S. G. (1989b) Proc. Natl. Acad. Sci. U.S.A. 86, 9793–9796.
49. Slater, J. P.; Tamir, I.; Loeb, L. A., & Mildvan, A. S. (1972) J. Biol. Chem. 247, 6784–6794.
50. Stahl, N., & Jencks, W. P. (1987) Biochemistry 26, 7654–7667.
51. Wang, J. C. (1985) Annu. Rev. Biochem. 54, 665–697.
52. Wong, I., Patel, S. S., & Johnson, K. A. (1991) Biochemistry 30, 526–537.