mtDNA and Y-chromosome polymorphisms in four native American populations from Southern Mexico

American Journal of Human Genetics

Volumn 54, Issue 2, 1994, Pages 303-318

  Torroni, Antonio ^a   Chen, Yu Sheng ^a   Semino, Ornella ^b   Santachiara Beneceretti, Augusta Silvana ^b   Scott, C Ronald ^c   Lott, Marie T ^a   Winter, Marcus ^d   Wallace, Douglas C ^a  

^a EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF PAVIA   (Italy)

^c UNIVERSITY OF WASHINGTON   (United States)

^d INSTITUTO NACIONAL DE ANTROPOLOGÍA E HISTORIA   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; CENTRAL AMERICA; CHROMOSOME POLYMORPHISM; DNA POLYMORPHISM; DNA SEQUENCE; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; HUMAN; MEXICO; PHYLOGENY; PRIORITY JOURNAL; Y CHROMOSOME;

DNA, MITOCHONDRIAL; FEMALE; GENE FREQUENCY; HAPLOTYPES; HUMANS; INDIANS, CENTRAL AMERICAN; MALE; MEXICO; PHYLOGENY; POLYMORPHISM, GENETIC; Y CHROMOSOME;

EID: 0028078605     PISSN: 00029297     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (57)

1. Anderson S, Bankier AT, Barrell BG, De Bruijn MHL, Coulson AR, Drouin J, Eperon IC, et al. (1981) Sequence and organization of the human mitochondrial genome. Nature 290:457-465
2. Ballinger SW, Schurr TG, Torroni A, Gan YY, Hodge JA, Hassan K, Chen KH, et al. (1992) Southeast Asian mitochondrial DNA analysis reveals genetic continuity of ancient mongoloid migrations. Genetics 130:139-152
3. Barabas AM, Bartolome MA (1990) Etnicidad y pluralismo cultural: la dinámica étnica en Oaxaca. Instituto Nacional de Antropologia e Historia, Mexico D.F.
4. Barker D, Schafer M, White R (1984) Restriction sites containing CpG show a higher frequency of polymorphism in human DNA. Cell 36:131-138
5. Barrantes R, Smouse PE, Mohrenweiser HW, Gershowitz H, Azofeifa J, Arias TD, Neel JV (1990) Microevolution in lower Central America: genetic characterization of the Chibcha-speaking groups of Costa Rica and Panama, and a consensus taxonomy based on genetic and linguistic affinity. Am J Hum Genet 46:63-84
6. Bishop CE, Guellaen G, Geldwerth D, Fellous M, Weissenbach J (1984) Extensive sequence homology between Y and other human chromosomes. J Mol Biol 173:403-417
7. Brega A, Torroni A, Semino O, Maccioni L, Casanova M, Scozzari R, Fellous M, et al. (1987) The p12f2/TaqI Y-specific polymorphism in three groups of Italians and in a sample of Senegalese. Gene Geogr 1:201-206
8. Breuil S, Halle L, Ruffie J, Lucotte G (1987) Polymorphism of p49 Y-specific probe in New Guinea Papuas Beruyas. Ann Genet 30:209-212 Campbell L, Mithun M (1979) The languages of native America. University of Texas Press, Austin
9. Breuil S, Halle L, Ruffie J, Lucotte G (1987) Polymorphism of p49 Y-specific probe in New Guinea Papuas Beruyas. Ann Genet 30:209-212 Campbell L, Mithun M (1979) The languages of native America. University of Texas Press, Austin
10. Cann RL, Wilson AC (1983) Length mutations in human mitochondrial DNA. Genetics 104:699-711
11. Casanova M, Leroy P, Boucekkine C, Weissenbach J, Bishop C, Fellous M, Purrello M, et al. (1985) A human Y linked DNA polymorphisms and its potential for estimating genetic and evolutionary distance. Science 230:1403-1406
12. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Evolution 32:550-570
13. Chagnon N, Neel JV, Weitkamp L, Gershowitz H, Ayres M (1970) The influence of cultural factors on the demography and pattern of gene flow from the Makiritare to the Yanomama Indians. Am J Phys Anthropol 32:339-350
14. Chakraborty R, Weiss KM (1991) Genetic variation of the mitochondrial DNA genome in American Indians is at mutation-drift equilibrium. Am J Phys Anthropol 86:497-506
15. Diamond JM (1990) The talk of the Americas. Nature 344:589-590
16. Feinberg AP, Vogelstein B (1984) A technique for radiolabelling DNA restriction fragments to high specific activity. Anal Biochem 137:266-267
17. Felsenstein J (1993) PHYLIP: phylogeny inference package, version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle
18. Greenberg J (1987) Language in the Americas. Stanford University Press, Stanford, CA
19. Guerin P, Rouger P, Lucotte G (1988) A new TaqI BO variant detected with the p49 probe on the human Y chromosome. Nucleic Acids Res 16: 7759
20. Hertzberg M, Mickleson KNP, Serjeantson SW, Prior JF, Trent RJ (1989) An Asian-specific 9-bp deletion of mitochondrial DNA is frequently found in Polynesians. Am J Hum Genet 44:504-510
21. Horai S, Kondo R, Nakagawa-Hattori Y, Hayashi S, Sonoda S, Tajima K (1993) Peopling of the Americas, founded by four major lineages of mitochondrial DNA. Mol Biol Evol 10:23-47
22. Horai S, Matsunaga E (1986) Mitochondrial DNA polymorphism in Japanese. II. Analysis with restriction enzymes of four or five base pair recognition. Hum Genet 72:105-117
23. Jakubiczka S, Arnemann J, Cooke HJ, Krawczak M, Schmidtke J (1989) A search for restriction fragment length polymorphism on the human Y chromosome. Hum Genet 84:86-88
24. Johnson MJ, Wallace DC, Ferris SD, Rattazzi MC, Cavalli-Sforza LL (1983) Radiation of human mitochondrial DNA types analyzed by restriction endonuclease cleavage patterns. J Mol Evol 19:255-271
25. Josserand JK, Winter M, Hopkins N (1984) Essays in Otomanguean culture history. Vanderbilt University Publications in Anthropology no 31, Vanderbilt University, Nashville
26. Kidd JR, Black FL, Weiss KM, Balazs I, Kidd K (1991) Studies of three Amerindian populations using nuclear DNA polymorphisms. Hum Biol 63:775-794
27. Lucotte G, David F (1992) Y-chromosome-specific haplotypes of Jews detected by probes 49f and 49a. Hum Biol 64:757-761
28. Lucotte G, Guerin P, Hallé L, Loirat F, Hazout S (1989) Y chromosome DNA polymorphims in two African populations. Am J Hum Genet 45:16-20
29. Lucotte G, Sriniva KR, Loirat F, Hazout S, Ruffle J (1990) The 49/TaqI Y-specific polymorphisms in three groups of Indians. Gene Geogr 4:21-28
30. Malaspina P, Persichetti F, Novelletto A, Jodice C, Terrenato L, Wolfe J, Ferraro M, et al. (1990) The human Y chromosome shows a low level of DNA polymorphism. Ann Hum Genet 54:297-305
31. Mitchell RJ, Earl L, Williams JW (1993) Two Y-chromosome-specific restriction fragment length polymorphisms (DY11 and DYZ8) in Italian and Greek migrants to Australia. Hum Biol 65:387-399
32. Neel JV (1978) The population structure of an Amerindian tribe, the Yanomama. Annu Rev Genet 12:365-413
33. _ (1980) Isolates and private polymorphisms. In: Eriksson A (ed) Population structure and genetic disorders. Academic Press, London, pp 173-193
34. Nei M, Tajima F (1983) Maximum likelihood estimation of the number of nucleotide substitutions from restriction site data. Genetics 105:207-217
35. Ngo KY, Vergnaud G, Johnsson C, Lucotte G, Weissenbach J (1986) A DNA probe detecting multiple haplotypes of the human Y chromosome. Am J Hum Genet 38:407-418
36. Nichols J (1990) Linguistic diversity and the first settlement of the New World. Language 66:475-521
37. Persichetti F, Blasi P, Hammer M, Malaspina P, Jodice C, Terrenato L, Novelletto A (1992) Disequilibrium of multiple DNA markers on the human Y chromosome. Ann Hum Genet 56:303-310
38. Quack B, Guerin P, Ruffie J, Lucotte G (1988) Mapping of probe p49f to the proximal part of the human Y chromosome long arm. Cytogenet Cell Genet 47:232
39. Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnheim N (1985) Enzymatic amplification of β-globin genomic sequences amd restriction site analyses for diagnoses of sickle cell anemia. Science 230:1350-1354
40. Santachiara-Benerecetti AS, Semino O, Passarino G, Morpurgo GP, Fellous M, Modiano G (1992) Y-chromosome DNA polymorphisms in Ashkenazi and Sephardi Jews. In: Bonne Tamir E, Adam A (eds) Genetic diversity among Jews: diseases and markers at the DNA level. Oxford University Press, Oxford and New York, pp 45-50
41. Santachiara-Benerecetti AS, Semino O, Passarino G, Torroni A, Brdicka R, Fellous M, Modiano G (1993) The common, near-eastern origin of Ashkenazi and Sephardi Jews supported by Y-chromosome similarity. Ann Hum Genet 57:55-64
42. Schurr TG, Ballinger SW, Gan Y-Y, Hodge JA, Merriwether DA, Lawrence DN, Knqwler WC, et al. (1990) Amerindian mitochondrial DNAs have rare Asian mutations at high frequencies, suggesting they derived from four primary maternal lineages. Am J Hum Genet 46:613-623
43. Shields GF, Hecker K, Voevoda MI, Reed JK (1992) Absence of the Asian-specific region V mitochondrial marker in native Beringians. Am J Hum Genet 50:758-765
44. Shields GF, Schmiechen AM, Frazier BL, Redd A, Voevoda MI, Reed JK, Ward RH (1993) mtDNA sequences suggest a recent evolutionary divergence for Beringian and northern North American populations. Am J Hum Genet 53:549-562
45. Spurdle A, Jenkins T (1992) Y chromosome probe 49a detects complex PvuII haplotypes and many new TaqI haplotypes in southern African populations. Am J Hum Genet 50:107-125
46. Stone AC, Stoneking M. Ancient DNA from a pre-Columbian Amerindian population. Am J Phys Anthropol (in press)
47. Stoneking M, Jorde LB, Bhatia K, Wilson AC (1990) Geographic variation in human mitochondrial DNA from Papua New Guinea. Genetics 124:717-733
48. Swofford D (1992) Phylogenetic analysis using parsimony (PAUP), version 3.0s. Illinois Natural History Survey, Champaign
49. Torroni A, Neel JV, Barrantes R, Schurr TG, Wallace DC. A mitochondrial DNA "clock" for the Amerinds and its implications for timing their entry into North America (submitted)
50. Torroni A, Schurr TG, Cabell MF, Brown MD, Neel JV, Larsen M, Smith DG, et al. (1993a) Asian affinities and continental radiation of the four founding Native American mtDNAs. Am J Hum Genet 53:563-590
51. Torroni A, Schurr TG, Yang C-C, Szathmary EJE, Williams RC, Schanfield MS, Troup GA, et al. (1992) Native American mitochondrial DNA analysis indicates that the Amerind and the Nadene populations were founded by two independent migrations. Genetics 130:153-162
52. Torroni A, Semino O, Scozzari R, Sirugo G, Spedini G, Abbas N, Fellous M, et al. (1990) Y-chromosome DNA polymorphisms in human populations: differences between Caucasoids and Africans detected by 49a and 49f probes. Ann Hum Genet 54:287-296
53. Torroni A, Sukernik RI, Schurr TG, Starikovskaya YB, Cabell MF, Crawford MH, Comuzzie AG, et al. (1993b) mtDNA variation of aboriginal Siberians reveals distinct genetic affinities with Native Americans. Am J Hum Genet 53:591-608
54. Wallace DC, Garrison K, Knowler WC (1985) Dramatic founder effects in Amerindian mitochondrial DNAs. Am J Phys Anthropol 68:149-155
55. Wallace DC, Torroni A (1992) American Indian prehistory as written in the mitochondrial DNA: a review. Hum Biol 64:403-416
56. Ward RH, Frazier BL, Dew-Jager K, Paabo S (1991) Extensive mitochondrial diversity within a single Amerindian tribe. Proc Natl Acad Sci USA 88:8720-8724
57. Wrischnik LA, Higuchi RG, Stoneking M, Erlich HA, Arnheim N, Wilson AC (1987) Length mutations in human mitochondrial DNA: direct sequencing of enzymatically amplified DNA. Nucleic Acids Res 15: 529-542