Cruciform DNA Binding Protein in HeLa Cell Extracts

Biochemistry

Volumn 33, Issue 47, 1994, Pages 14185-14196

  Pearson, Christopher E ^a   Ruiz, Marcia T ^a   Price, Gerald B ^a   Zannis Hadjopoulos, Maria ^a  

^a MCGILL UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CRUCIFORM DNA; DNA BINDING PROTEIN; HETERODUPLEX; VIRUS DNA;

ARTICLE; HELA CELL; HUMAN; HUMAN CELL; MOLECULAR WEIGHT; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; SIMIAN VIRUS 40;

BASE SEQUENCE; BINDING, COMPETITIVE; DEOXYRIBONUCLEASE HINDIII; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA; DNA, VIRAL; DNA-BINDING PROTEINS; ENDOPEPTIDASE K; HELA CELLS; HUMAN; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HETERODUPLEXES; PLASMIDS; REPETITIVE SEQUENCES, NUCLEIC ACID; RIBONUCLEASE, PANCREATIC; SERINE ENDOPEPTIDASES; SIMIAN VIRUS 40; STRUCTURE-ACTIVITY RELATIONSHIP; SUPPORT, NON-U.S. GOV'T;

SIMIAE; SIMIAN VIRUS; SIMIAN VIRUS 40; SV40 VIRUS;

EID: 0028061498     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi00251a030     Document Type: Article

References (120)

1. Alexandrova, E. A., & Beltchev, B. G. (1988) Biochem. Biophys. Res. Commun. 154, 918—927.
2. Alexandrova, E. A., Marekov, L. N., & Beltchev, B. G. (1984) FEBS Lett. 178, 153-156.
3. Alliger, P., Traut, W., Carstens, E., & Fanning, E. (1988) Biochim. Biophys. Acta 951, 396—402.
4. Baker, C., Isenberg, I., Goodwin, G. H., & Johns, E. W. (1976) Biochemistry 15, 1645—1649
5. Battistoni, A., Leoni, L., Sampaolese, B., & Savino, M. (1988) Biochim. Biophys. Acta 950, 161 — 171.
6. Baur, C.-P., & Knippers, R. (1988) J. Mol. Biol. 203, 1009-1019
7. Bell, L. R., & Byers, B. (1979) Proc. Natl. Acad. Sci. U.S.A. 76, 3445-3449.
8. Bell, D., Sabloff, M., Zannis-Hadjopoulos, M., & Price, G. B. (1991) Biochim. Biophys. Acta 1089, 299—308.
9. Bianchi, M. E. (1988) EMBO J. 7, 843-849.
10. Bianchi, M. E., Beltrame, M., & Paonessa, G. (1989) Science 243, 1056-1059.
11. Bianchi, M. E., Falciola, L., Ferrari, S., & Lilley, D. M. J. (1992) EMBO J. 11, 1055-1063.
12. Blommers, M. J. J., Walters, J. A. L. I., Haasnoot, C. A. G., Aelen, J. M. A., Van der Marel, G. A., Boom, J. H., & Hilbers, C. W. (1989) Biochemistry, 28, 7491-7498
13. Bonne-Andrea, C., Harper, F., Puvion, E., & Delpech, M. (1986) Biol. Cell 58, 185-194
14. Boulikas, T., & Kong, C. F. (1993) J. Cell. Biochem. 53, 1-12.
15. Burd, J. F., Larson, J. E., & Wells, R. D. (1975) J. Biol. Chem. 250, 6002-6007
16. Burnette, W. (1981) Anal. Biochem. 112, 195—203.
17. Bustin, M., & Soares, N. (1985) Biochem. Biophys. Res. Commun. 133, 633—640.
18. Bustin, M., Lehn, D. A., & Landsman, D. (1990) Biochim. Biophys. Acta 1049, 231—243
19. Campbell, J. L. (1986) Annu. Rev. Biochem. 55, 733—771.
20. Carmichael, E. P., Roome, J. M., & Wahl, A. F. (1993) Mol. Cell. Biol. 13, 408-420.
21. Chen, J.-H., Churchill, M. E. A., Tullius, T. D., Kallenbach, N. R., & Seeman, N. R. (1988) Biochemistry 27, 6032—6038
22. Cole, R. D. (1984) Anal. Biochem. 136, 24—30.
23. Cozzarelli, N. R., & Wang, J. C., Eds. (1990) DNA Topology and its Biological Effects, Cold Spring Harbor Lab Press, Cold Spring Harbor, NY.
24. Crothers, D. M., & Fried, M. (1982) Cold Spring Harbor Symp. Quant. Biol. 47, 263—269
25. Dayn, A., Malkhosyan, S., & Mirkin, S. M. (1992) Nucleic Acids Res. 20, 5991-5997
26. Deb, S., DeLucia, A. L., Baur, C.-P., Koff, A., & Tegtmeyer, P. (1986) Mol. Cell. Biol. 6, 1663-1670
27. Decker, S. R., Yamaguchi, M., Posenti, R., & DePamphilis, M. L. (1986) Mol. Cell. Biol. 6, 3815-3825.
28. Diekmann, S., & Lilley, D. M. J. (1987) Nucleic Acids Res. 15, 5765-5774
29. Drew, H. R., & Travers, A. A. (1985) Nucleic Acids Res. 13, 4445-4467.
30. Duckett, D. R., Murchie, A. I. H., Bhattacharyya, A., Clegg, R. M., Diekmann, S., von Kitzing, E., & Lilley, D. M. J. (1992) Eur. J. Biochem. 207, 285-295.
31. Duguet, M., Soussi, T., Rossignol, J. M., Mechali, M., & De Recondo, A. M. (1977) FEBS Lett. 79, 160-164.
32. Elborough, K. M., & West, S. C. (1988) Nucleic Acids Res. 16, 3603-3615.
33. Frappier, L., Price, G. B., Martin, R. G., & Zannis-Hadjopoulos, M. (1987) J. Mol. Biol. 193, 751-758.
34. Frappier, L., Price, G. B., Martin, R. G., & Zannis-Hadjopoulos, M. (1989) J. Biol. Chem. 264, 334-341.
35. Fried, M., Feo, S., & Heard, E. (1991) Biochim. Biophys. Acta 1090, 143-155.
36. Gaillard, C., Weber, M., & Strauss, F. (1988) J. Virol. 62, 2380-2385.
37. Galli, I., Iguchi-Ariga, S. M., & Ariga, H. (1992) Nucleic Acids Res. 20, 3333-3339.
38. Germann, M. W., Kalisch, B. W., Lundberg, P., Vogel, H. J., & van de Sande, J. (1990) Nucleic Acids Res. 18, 1489— 1498.
39. Gierer, A. (1966) Nature 212, 1480—1481
40. Goodwin, G. H., Walker, J. M., & Johns, E. W. (1978) Biochim. Biophys. Acta 519, 233—242
41. Gough, G. W., & Lilley, D. M. J. (1985) Nature 313, 154- 156.
42. Greenberg, M. E., Siegfried, Z., & Ziff, E. B. (1987) Mol. Cell. Biol. 7, 1217-1225.
43. Hamada, H., & Bustin, M. (1985) Biochemistry 24, 1428—1433
44. Hand, R. (1978) Cell 15, 317-325.
45. Hartman, A. J., Crane-Robinson, P. G., & Aviles, F. X. (1980) Nature 288, 675—679.
46. Hiasa, H., Sakai, H., Koman, T., & Godson, N. (1990) Nucleic Acids Res. 18, 4825-4831
47. Hogan, M. E., & Austin, R. H. (1987) Nature 329, 263—266
48. Horwitz, M. S. Z. (1989) Nucleic Acids Res. 17, 5537—5545
49. Horwitz, M. S. Z., & Loeb, L. A. (1988) Science 241, 703— 705.
50. Hsu, M.-T. (1985) Virology 143, 617-621.
51. Johnson, R. D., & Symington, L. S. (1993) J. Mol. Biol. 229, 812-820.
52. Jones, N. C., Rigby, P. W. J., & Ziff, E. B. (1988) Genes Dev. 2, 267-281.
53. Klein, H. L., & Welch, S. K. (1980) Nucleic Acids Res. 8, 4651-4669
54. Klein, R. D., & Wells, R. D. (1982) J. Biol. Chem. 257, 12954-12961.
55. Klysik, J. (1992) J. Biol. Chem. 267, 17430-17437.
56. Krylov, D., Leuba, S., van Holde, K., & Zlatanova, J. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 5052-5056
57. Laemmli, U. K. (1970) Nature 227, 680-685.
58. Landry, S., & Zannis-Hadjopoulos, M. (1991) Biochim. Biophys. Acta 1088, 234-244.
59. Lilley, D. M. J. (1992) Nature 357, 282-283
60. Lu, M., Guo, Q., Seeman, N. C., & Kallenbach, N. R. (1989) J. Biol. Chem. 264, 20851-20854
61. Lu, M., Guo, Q., Mueller, J. E., Kemper, B., Studier, F. W., Seeman, N. C., & Kallenbach, N. R. (1990) J. Biol. Chem. 265, 16778-16785.
62. Malkas, L. H., & Baril, E. F. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 70-74.
63. Malkas, L. H., Hickey, R. J., Li, C., Pedersen, N., & Baril, E. F. (1990) Biochemistry 29, 6362—6374.
64. Masukata, H., & Tomizawa, J. (1984) Cell 36, 513—522.
65. Maxam, A. M., & Gilbert, W. (1980) Methods Enzymol. 65, 499-560.
66. McLean, M. J., & Wells, R. D. (1988) J. Biol. Chem. 263, 7370-7377.
67. McMurray, C. T., Wilson, W. D., & Douglass, J. O. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 666-670.
68. Mizuuchi, K., Mizuuchi, M., & Gellert, M. (1982) J. Mol. Biol. 156, 229-243
69. Morales, N., Cobourn, S. D., & Muller, U. R. (1990) Nucleic Acids Res. 18, 2777-2782.
70. Muller, U. R., & Fitch, W. M. (1982) Nature 298, 582-585.
71. Murchie, A. I. H., Carter, W. A., Portugal, J., & Lilley, D. M. J. (1990) Nucleic Acids Res. 18, 2599—2606
72. Nickol, J., & Martin, R. G. (1983) Proc. Natl. Acad. Sci. U.S.A. 80, 4669-4673
73. Nielsen, T., Bell, D., Lamoureux, C., Zannis-Hadjopoulos, M., & Price, G. B. (1994) Mol. Gen. Genet. 242, 280-288
74. Nobile, C., & Martin, R. G. (1986) Intervirology 25, 158—171
75. Nobile, C., Nickol, J., & Martin, R. G. (1986) Mol. Cell. Biol. 6, 2916-2922.
76. Noirot, P., Bargonetti, J., & Novick, R. P. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 8560-8564.
77. Ofverstedt, L.-G., Hammarstrom, K., Bagobin, N., Hjeten, S., Petersson, U., & Chattopadhyaya, J. (1984) Biochim. Biophys. Acta 782, 120-126
78. Paillard, S., & Strauss, F. (1991) Nucleic Acids Res. 19, 5619— 5624
79. Panayotatos, N., & Fontaine, A. (1987) J. Biol. Chem. 262, 11364-11368.
80. Parsons, C. A., Kemper, B., & West, S. C. (1990) J. Biol. Chem. 265, 9285-9289.
81. Pearson, C. E., Frappier, L., & Zannis-Hadjopoulos, M. (1991) Biochim. Biophys. Acta 1090, 156—166.
82. Pearson, C. E., Shihab-El-Deen, A., Price, G. B., & Zannis-Hadjopoulos, M. (1994) Somatic Cell Mol. Genet. 20, 147— 152.
83. Petrillo, M. L., Newton, C. J., Cunningham, R. P., Ma, R.-I., Kallenbach, N. R., & Seeman, N. C. (1988) Biopolymers 27, 1337-1352.
84. Pil, P. M., & Lippard, S. J. (1992) Science 256, 234—237.
85. Pruss, G. J., & Drlica, K. (1989) Cell 56, 521-523.
86. Rosenberg, M., & Court, D. (1979) Annu. Rev. Genet. 13, 319— 353.
87. Schmid, C. W., Manning, J. E., & Davidson, N. (1975) Cell 5, 159-172.
88. Sheflin, L. G., & Kowalski, D. (1985) Nucleic Acids Res. 13, 6137-6154.
89. Shooter, K. V., Goodwin, G. H., & Johns, E. W. (1974) Eur. J. Biochem. 47, 263—270
90. Shuster, J., Yu, J., Cox, D., Chan, R. V. L., Smith, M., & Young, E. (1986) Mol. Cell. Biol. 6, 1894-1902.
91. Simpson, R. T. (1990) Nature 343, 387—389.
92. Singh, J., & Dixon, G. H. (1990) Biochemistry 29, 6295—6302
93. Spiro, C., Richards, J. P., Chandrasekaran, S., Brennan, R. G., & McMurray, C. T. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 4606-4610.
94. Sullivan, K. M., & Lilley, D. M. J. (1986) Cell 47, 817-827.
95. Sun, W., & Godson, G. N. (1993) J. Biol. Chem. 268, 8026-8039.
96. Svaren, J., Inagami, S., Lovegren, E., & Chalkley, R. (1987) Nucleic Acids Res. 15, 8739—8754
97. Timsit, Y., & Moras, D. (1991) J. Mol. Biol. 221, 919-940
98. Toth, E. C., Marusic, L., Ochem, A., Patthy, A., Pongor, S., Giacca, M., & Falaschi, A. (1993) Nucleic Acids Res. 21, 3257-3263.
99. Travers, A. A. (1989) Annu. Rev. Biochem. 58, 427—52.
100. Tremethick, D. J., & Molloy, P. L. (1986) J. Biol. Chem. 261, 6986-6992.
101. Tremethick, D. J., & Molloy, P. L. (1988) Nucleic Acids Res. 16, 11107-11123.
102. Triboli, C., Biamonti, C., Giacca, M., Colonna, M., Riva, S., & Falaschi, A. (1987) Nucleic Acids Res. 15, 10211 — 10232
103. Tschumper, G., & Carbon, J. (1982) J. Mol. Biol. 156, 293— 307
104. Varga-Weisz, P., van Holde, K., & Zlatanova, J. (1993) J. Biol. Chem. 268, 20699-20700.
105. Vieira, J., & Messing, J. (1982) Gene 19, 259-268
106. von Freiesleben, U., & Rasmussen, K. V. (1992) Res. Microbiol. 143, 655-663.
107. Waga, S., Mizuno, S., & Yoshida, M. (1990) J. Biol. Chem. 265, 19424-19428.
108. Ward, G. K., McKenzie, R., Zannis-Hadjopoulos, M., & Price, G. B. (1990) Exp. Cell Res. 188, 235-246.
109. Ward, G. K., Shihab-El-Deen, A., Zannis-Hadjopoulos, M., & Price, G. B. (1991) Exp. Cell Res. 195, 92-98
110. Watt, F., & Molloy, P. L. (1988) Nucleic Acids Res. 16, 1471 — 1486.
111. Weintraub, H. (1983) Cell 32, 1191-1203.
112. White, J. H., & Bauer, W. R. (1987) J. Mol. Biol. 195, 205-213.
113. Williamson, J. R., & Boxer, S. G. (1989) Biochemistry 28, 2831-2836
114. Wilson, D. A., & Thomas, C. A., Jr. (1974) J. Mol. Biol. 84, 115-144
115. Zannis-Hadjopoulos, M., Kaufmann, G., & Martin, R. G. (1984) J. Mol. Biol. 179, 577-586
116. Zannis-Hadjopoulos, M., Kaufmann, G., Wang, S.-S., Lechner, R. L., Karawya, E., Hesse, J., & Martin, R. G. (1985) Mol. Cell. Biol. 5, 1621-1629
117. Zannis-Hadjopoulos, M., Frappier, L., Khoury, M., & Price, G. B. (1988) EM BO J. 7, 1837-1844.
118. Zechiedrich, E. L., & Osheroff, N. (1990) EMBO J. 9, 4555- 4562
119. Zheng, G., Kochel, T., Hoepfner, R. W., Timmons, S. E., & Sinden, R. R. (1991) J. Mol. Biol. 221, 107-129.
120. Zyskind, J. W., Cleary, M., Brusilow, W. S. A., Harding, N. E., & Smith, D. W. (1983) Proc. Natl. Acad. Sci. U.S.A. 80, 1164-1168