Comparison of fluorescence-based semi-automated genotyping of multiple microsatellite loci with autoradiographic techniques

Genomics

Volumn 22, Issue 1, 1994, Pages 46-54

  Schwengel, Deborah A ^a   Jedlicka, Anne E ^a   Nanthakumar, Elizabeth J ^a   Weber, James L ^b   Levitt, Roy C ^a  

^a DEPARTMENT OF PATHOLOGY   (United States)

^b MARSHFIELD CLINIC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT;

ALLELE; ARTICLE; AUTORADIOGRAPHY; CYTOGENETICS; DNA POLYMORPHISM; DNA SEQUENCE; FLUORESCENCE; GENE AMPLIFICATION; GENETIC ANALYSIS; GENOTYPE; ISOTOPE LABELING; MOLECULAR GENETICS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

ALLELES; AUTORADIOGRAPHY; BASE SEQUENCE; COMPARATIVE STUDY; DNA PRIMERS; DNA, SATELLITE; EVALUATION STUDIES; FLUORESCENCE; GENETIC MARKERS; GENETIC TECHNIQUES; HUMAN; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; REPETITIVE SEQUENCES, NUCLEIC ACID; SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, P.H.S.;

EID: 0027932334     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1006/geno.1994.1344     Document Type: Article

References (18)

1. Beckmann, J. S., and Weber, J. L. (1992). Survey of human and rat microsatellites. Genomics 12: 627-631.
2. Botstein, D., White, R. L., Skolnick, M., and Davis, R. W. (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32:314-331.
3. Carrano, A. V., Lamerdin, J., Ashworth, L. K., Watkins, B., Brans-comb, E., Slezak, T., Raff, M., Dejong, P. J., Keith, D., Mc Bride, L., Meister, S., and Kronick, M. (1989). A high-resolution fluorescence-based, semi-automated method for DNA fingerprinting. Genomics 4: 129-136.
4. Connell, C., Fung, S., Heiner, C., Bridgham, J., Chakerian, V., Heron, E., Jones, B., Menchen, S., Mordian, W., Raff, M., Recknor, M., Smith, L., Springer, J., Woo, S., and Hunkapiller, M. (1987). Automated DNA sequence analysis. Bio Techniques 5: 342-348.
5. Diehl, S. R., Ziegle, J., Buck, G. A., Reynolds, T. R., and Weber, J. L. (1990). Automated genotyping of human DNA polymorphisms. Am. J. Hum. Genet. 47: A177.
6. Donis-Keller, H., Green, P., Helms, C., Cartinhour, S., Weiffenbach, B., Stephens, K, Keith, T. P., Bowden, D. W., Smith, D. R., Lander, E. S., Botstein, D., Akots, G., Redliker, K. S., Gravius, T., Brown, V. A., Rising, M. B., Parker, C., Powers, J. A., Watt, D. E., Kauffman, E. R., Bricker, A., Phipps, P., Muller-Kahle, H., Fulton, T. R., Ng, S., Schumm, J. W., Braman, J. C., Knowlton, R. G., Barker, D. F., Crooks, S. M., Lincoln, S. E., Daly, M. J., and Abra-hamson, J. (1987). A genetic linkage map of the human genome. Cell 51: 319-337.
7. Edwards, A., Civitello, A., Hammond, H. A., and Caskey, C. T. (1991). DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am. J. Hum. Genet. 49: 746-756.
8. Lander, E. S. (1991). Invited editorial: Research on DNA typing catching up with courtroom application. Am. J. Hum. Genet. 48: 819-823.
9. Laskey, R. A., and Mills, A. D. (1975). Quantitative film detection of 3H and 14C in polyacrylamide gels by fluorography. Eur. J. Bio-chem. 56: 335-341.
10. Litt, M., and Luty, J. A. (1989). A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am. J. Hum. Genet. 44: 397-401.
11. Nie, L., Ziegle, J., Su, Y., Meyer, J., Mac Lean, C., Mc Bride, L., Kronick, M., and Diehl, S. (1991). Automated genotyping of highly polymorphic human DNA markers: Progress in multiplexing and optimal locus combination strategies. Am. J. Hum. Genet. 49(Suppl.): 366.
12. NIH/CEPH Collaborative Mapping Group (1992). A comprehensive genetic linkage map of the human genome. Science 258: 67-86.
13. Saiki, R. K, Gelfand, D. H., Stoffel, S., Scharf, S. J., Higuchi, R., Horn, G. T., Mullís, K. B., and Erlich, H. A. (1988). Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239: 487-491.
14. Skolnick, M. H., and Wallace, R. B. (1988). Simultaneous analysis of multiple polymorphic loci using amplified sequence polymorphisms (ASPs). Genomics 2: 273-279.
15. Weber, J. L., and May, P. E. (1989). Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Ant. J. Hum. Genet. 44: 388-396.
16. Weber, J. L., Wang, Z., Hansen, K., Stephenson, M., Kappel, C., Salzman, S., Wilkie, P. J., Keats, B., Draco poli, N. C., Brandriff, B. F., and Olsen, A. S. (1993). Evidence for human meiotic recombination interference obtained through construction of a short tandem repeat-polymorphism linkage map of chromosome 19. Am. J. Hum. Genet. 53: 1079-1095.
17. Weissenbach, J., Gyapay, G., Dib, C., Vignal, A., Morissette, J., Mil-lasseau, P., Vaysseix, G., and Lathrop, M. (1992). A second-generation linkage map of the human genome. Nature 359: 794-801.
18. Ziegle, J. S., Su, Y., Corcoran, K. P., Nie, L., Mayrand, E., Hoff, L. B., Mc Bride, L. J., Kronick, M. N., and Diehl, S. R. (1992). Application of automated DNA sizing technology for genotyping microsatellite loci. Genomics 14: 1026-1031.