Mapping Protein Domains Involved in Macromolecular Interactions: A Novel Protein Footprinting Approach

Biochemistry

Volumn 33, Issue 32, 1994, Pages 9643-9650

  Heyduk, Ewa ^a   Heyduk, Tomasz ^a  

^a SAINT LOUIS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO TERMINAL SEQUENCE; ARTICLE; BINDING SITE; DNA FOOTPRINTING; IMMUNOHISTOCHEMISTRY; MOLECULAR INTERACTION; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN DNA INTERACTION;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BINDING SITES; BIOCHEMISTRY; CYCLIC AMP; DNA; EDETIC ACID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; IMMUNOBLOTTING; IRON CHELATING AGENTS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; PEPTIDE MAPPING; PROTEIN BINDING; RECEPTORS, CYCLIC AMP; SUPPORT, NON-U.S. GOV'T;

EID: 0027931824     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi00198a033     Document Type: Article

References (41)

1. Angulo, J. A., & Krakow, J. S. (1985) Arch. Biochem. Biophys. 236, 11–16.
2. Bazari, W. L., Matsudaira, P., Wallek, M., Smeal, T., Jakes, R., & Ahmed, Y. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 4986–4990.
3. Brenowitz, M., Senear, D., Shea, M. A., & Ackers, G. K. (1986) Methods Enzymol. 30, 133–181.
4. Burnens, A., Demotz, S., Corradin, G., Binz, H., & Bosshard, H. R. (1987) Science 235, 780–783.
5. Cheng, X., Gonzales, M., & Lee, J. C. (1993) Biochemistry 32, 8130–8139.
6. de Arruda, M. V., Bazari, H., Wallek, M., & Matsudaira, P. (1992) J. Biol. Chem. 267, 13079–13085.
7. Doolittle, R. F. (1986) Of urfs and orfs: a primer on how to analyze derived amino acid sequences, p 87, University Science Books, Mill Valley, CA.
8. Ebright, R. H., Ebright, Y., & Gunasakera, A. (1989) Nucleic Acids Res. 17, 10295–10305.
9. Ermacora, M. R., Delfino, J. M., Cuenoud, B., Schepartz, A., & Fox, R. O. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 6383–6387.
10. Ferguson, K. A. (1964) Metabolism 13, 985–1002.
11. Fried, M. G., & Crothers, D. M. (1984) J. Mol. Biol. 172, 241–262.
12. Galas, D. J., & Schmitz, B. (1978) Nucleic Acids Res. 5, 3157–3170.
13. Gentry, D. R., & Burgess, R. R. (1993) Biochemistry 32, 11224–11227.
14. Harnes, B. D. (1990) in Gel Electrophoresis of Proteins. A Pratical Approach (Harnes, B. D., & Rickwood, D., Eds.) IRL Press, Oxford.
15. Heyduk, E., Heyduk, T., & Lee, J. C. (1992) Biochemistry 31, 3682–3688.
16. Heyduk, T., & Lee, J. C. (1989) Biochemistry 28, 6914–6924.
17. Heyduk, T., & Lee, J. C. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 1744–1748.
18. Heyduk, T., Lee, J. C., Ebright, Y. W., Blatter, E. E., Zhou, Y., & Ebright, R. H. (1993) Nature 364, 548–549.
19. Hoyer, D., Cho, H., & Schultz, P. G. (1990) J. Am. Chem. Soc. 112, 3249–3250.
20. Jue, R. A., & Doolittle, R. F. (1985) Biochemistry 24, 162–170.
21. Kolb, A., Busby, S., Buc, H., Garges, S., & Adhya, S. (1993) Annu. Rev. Biochem. 62, 749–785.
22. Kim, J., Adhya, S., & Garges, S. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 9700–9704.
23. Lesley, S. A., & Burgess, R. R. (1989) Biochemistry 28, 7728–7734.
24. Lin, W., & Kasamatsu, H. (1983) Anal. Biochem. 128, 302–311.
25. Matsudaira, P., Jakes, R., Cameron, L., & Atherton, E. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 6788–6792.
26. Phelps, R. A., Neet, K. E., Lynn, L. T., & Putnam, F. W. (1961) J. Biol. Chem. 236, 96–105.
27. Piszkiewicz, D., Landon, M., & Smith, E. L. (1970) Biochem. Biophys. Res. Commun. 40, 1173–1178.
28. Platis, I. E., Ermacora, M. R., & Fox, R. O. (1993) Biochemistry 32, 12761–12993.
29. Rana, T. M., & Meares, C. F. (1990) J. Am. Chem. Soc. 112, 2457–2458.
30. Rana, T. M., & Meares, C. F. (1991a) J. Am. Chem. Soc. 113, 1859–1861.
31. Rana, T. M., & Meares, C. F. (1991b) Proc. Natl. Acad. Sci. U.S.A. 88, 10578–10582.
32. Schagger, H., & von Jagow, G. (1987) Anal. Biochem. 166, 368–279.
33. Schepartz, A., & Cuenoud, B. (1990) J. Am. Chem. Soc. 112, 3247–3249.
34. Schultz, S. C., Shields, G. C., & Steitz, T. A. (1991) Science 253, 1001–1007.
35. Stadtman, E. R. (1993) Annu. Rev. Biochem. 62, 797–821.
36. Takahashi, M., Blazy, B., & Baudras, A. (1980) Biochemistry 19, 5124–5130.
37. Tsugita, A., Blazy, B., Takahashi, M., & Baudras, A. (1982) FEBS Lett. 144, 304–308.
38. Tulius, T. D., & Dombroski, B. A. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 5469–5473.
39. Weber, I. T., & Steitz, T. A. (1987) J. Mol. Biol. 198, 311–326.
40. Weber, K., & Osborn, M. (1975) The Proteins, 3d ed., Vol. 1, p 179, Academic Press, New York.
41. Zhou, Y., Zhang, X., & Ebright, R. H. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 6081–6085.