Multiple hox/hom-class homeoboxes in platyhelminthes

Molecular Phylogenetics and Evolution

Volumn 2, Issue 2, 1993, Pages 143-151

  Bartels, Janet L ^a   Murtha, Michael T ^a   Ruddle, Frank H ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; GENE; GENETICS; HOMEOBOX; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLATYHELMINTH; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMAL; BASE SEQUENCE; DNA; GENES, HELMINTH; GENES, HOMEOBOX; MOLECULAR SEQUENCE DATA; PLATYHELMINTHS; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY, AMINO ACID; SUPPORT, U.S. GOV'T, NON-P.H.S.; SUPPORT, U.S. GOV'T, P.H.S.;

EID: 0027617485     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1006/mpev.1993.1014     Document Type: Article

References (64)

1. Akam, M. (1989). Hox and HOM: Homologous gene clusters in insects and vertebrates. Cell 57: 347-349.
2. Barnes, R. D. (1988). “Invertebrate Zoology,” 5th ed., Saunders College Publishing, New York.
3. Baron, A., Featherstone, M. S., Hill, R. E., Hall, A., Galliot, B., and Duboule, D. (1987). Hox-1.6: A mouse homeo-box-containing gene member of the Hox-1 complex. EMBO J. 6: 2977-2986.
4. Bogarad, L. D., Utset, M. F., Awgulewitsch, A., Miki, T., Hart. C. P., and Ruddle, F. H. (1989). The developmental expression of a new murine homeobox gene: Hax-2.5. Dev. Biol. 133: 537-549.
5. Bürglin, T. R., Finney, M., Coulson, A., and Ruvkun, G. (1989). Caenorhabditis elegans has scores of homeobox-containing genes. Nature 341: 239-243.
6. Bürglin, T. R., Ruvkun, G., Coulson, A., Hawkins, N. C., McGhee, J. D., Schaller, D., Wittmann, C., Müller, F., and Waterson, R. H. (1991). Nematode homeobox cluster. Nature 351: 703.
7. Cartwright, P., Dick, M., and Buss, L. W. (1993). Hox HOM-type homeoboxes in a chelicerate. Limulus polyphemus. Mol. Phylogenetics Evol., submitted for publication.
8. Celniker, S. E., Keelan, D. J., and Lewis, E. B. (1989) The molecular genetics of the bithorax complex of Drosophila: Characterization of the products of the Abdominal-B domain. Genes Dev. 3: 1424-1436.
9. Colberg-Polev, A. M., Voss, S. D., Chowdhurv, K., Stewart, C. L., Wagner, E. F., and Gruss, P. (1985). Clustered homeo boxes are differentially expressed during murine development. Cell 43: 39-45.
10. Costa, M., Weir, M., Coulson, A., Sulston, J., and Kenyon, C. (1988). Posterior pattern formation in C. elegans involves position-specific expression of a gene containing a homeobox. Cell 55: 747-756.
11. Cribbs, D. L., Pultz, M. A., Johnson, D., Mazzulla, M., and Kaufman, T. C. (1992). Structural complexity and evolutionary conservation of the Drosophila homeotic gene proboseipedia. EMBO J. 11: 1437-1449.
12. DeLorenzi, M., Ali, N., Saari, G., Henry, C., Wilcox, M., and Bienz, M. (1988). Evidence that the Abdominal-B r element function is conferred by a trans-regulatory homeoprotein. EMBO J. 7: 3223-3231.
13. Dolecki, G. J., Wannakrairoj, S., Lum, R., Wang, G., Rilev, H. D., Carlos, R., Wang, A., and Humphreys, T. (1986). Stage-specific expression of a homeo box-containing gene in the non-segmented sea urchin embryo. EMBO -I. 5: 925-930.
14. Dolecki, G. J., Wang, G., and Humphreys, T. (1988). Stage- and tissue-specific expression of two homeo box genes in sea urchin embryos and adults. Nucleic Acids Res. 16: 11543-11558.
15. Duprey, P., Chowdhurv, K., Dressier, G. R., Balling, R., Simon, D., Guenet, J. L., and Gruss, P. (1988). A mouse gene homologous to the Drosophila gene caudal is expressed in epithelial cells from the embryonic intestine. Genes Dev. 2: 1647-1654.
16. Felsenstein, J. (1983). Parsimony in systematic«: Biological and statistical issues. Anna. Rev. Eeol. Syst. 14: 313-333.
17. Fibi, M., Zink, B., Kessel, M., Colberg-Polev, A. M., Labeit, S., Leh-rach, H., and Gruss, P. (1988). Coding sequence and expression of the homeobox gene Hox 1.3. Development 102: 349-359.
18. Fritz, A. F., Cho, K. W., Wright, C. V., Jegalian, B. G., and De Robertis, E. M. (1989). Duplicated homeobox genes in Xenopus. Dev. Biol. 131: 584-588.
19. Frumkin, A., Rangini, Z., Ben-Yehuda, A., Gruenbaum, Y., and Fainsod, A. (1991). A chicken caudal homologue, CHox-cad. is expressed in the epiblast with posterior localization and in the early endodermal lineage. Development 112: 207-219.
20. Galliot, B., Dolle, P., Vigneron, M., Featherstone, M. S., Baron, A., and Duboule, D. (1989). The mouse Hox-1.4 gene: Primary structure. evidence for promoter activity and expression during development. Development 107: 343-359.
21. Garcia-Fernändez, J., Baguhä, J., and Salb, E. (1991). Planarian homeobox genes: Cloning, sequence analysis, and expression. Proc. Natl. Acad. Set. USA 88: 7338-7342.
22. Gaunt, S. J., Coletta, P. L., Pravtcheva, D., and Sharpe, P. T. (1990) Mouse Hox-3.4: Homeobox sequence and embryonic expression patterns compared with other members of the Hox gene network. Development 109: 329-339.
23. Hart, C. P., Fainsod, A., and Ruddle, F. H. (1987). Sequence analysis of the murine Hox-2.2. -2.3. and -2.4 homeo boxes: Evolutionary and structural comparisons Genomics 1: 182-195.
24. Hauser C. A., Joyner, A. L., Klein, R. D., Learned, T. K., Martin, G. R. and Tjian, R. (1985). Expression of homologous homeo-box-containing genes in differentiated human teratocarcinoma cells and mouse embryos. Cell 43: 19-28.
25. Hawkins, N. C., and McGhee, J. D. (1990). Homeobox containing genes in the nematode Caenorhabditis elegans. Nucleic Acids Res. 18: 6101-6106.
26. Hempstead, P. G., Regular, S. C., and Ball, I. R. (1990). A method for the preparation of high-molecular-weight DNA from marine and freshwater tricalds (Platyhelminthes, Turbellaria). DNA Cell Biol. 9: 57-61.
27. Hyman, L. H. (1951.) “The Invertebrates: Platyhelminthes and Rhvnchocoela." McGraw-Hill, New York.
28. Izpisua-Belmonte, J.-C., Falkenstein, H., Dolle, P., Renucci, A., and Duboule, D. (1991). Murine genes related to the Drosophila AbdB homeotic genes are sequentially expressed during development of the posterior part of the body. EMBO -7. 10: 2279-2289.
29. Jacksor, I. J., Schofield, P., and Hogan, B. (1985). A mouse homeo box gene is expressed during embryogenesis and in adult kidnev. Nature 317: 745-749.
30. Kami, A., Weir, M., Rudy, B., Varmus, H., and Kenyon, C. (1989). Identification of genes from pattern formation, tyrosine kinase, and potassium channel families by DNA amplification. Proc. Natl. Acad Sci. USA 86: 4372-4376.
31. Kappen, C., Schughart, K., and Ruddle, F. H. (1989). Two steps in the evolution of Antennapedia-class vertebrate homeobox genes. Proc. Natl. Acad. Sci. USA 86: 5459-5463.
32. Kenyon, K. and Wang, B. (1991). A cluster of Antennapedia-dnss homeobox genes in a nonsegmented animal. Science 253: 516-517.
33. Kessel, M., Drescher, U., and Gruss, P. (1987). The murine homeo domain protein Hox 1.1. Ann. N. Y Acad. Sci. 511: 88-100.
34. Krumlauf, R., Holland, P. W., McVey, J. H., and Hogan, B. L. (1987). Developmental and spatial patterns of expression of the mouse homeobox gene. Hox 2.1. Development 99: 603-617.
35. Laughon, A., Boulet, A. M., Bermingham, J. R., Jr., Lavmon, R. A., and Scott, M. P. (1986). Structure of transcripts from the homeotic Anternapedia gene of Drosophila melanogaster: Two promoters control the major protein-coding region. Mol. Cell. Biol. 6: 4676-4689.
36. LeMotte, P. K., Kuroiwa, A., Fessler, L. L., and Gehring, W. J. (1989). The homeotic gene Sex Combs Reduced of Drosophila: Gene structure and embryonic expression. EMBO -J. 8: 219-227.
37. Mavilio, F., Simeone, A., Giampaolo, A., Faiella, A., Zappavigna, V., Acampora, D., Poiana, G., Russo, G., Peschle, C., and Boncinelli, E. (1986). Differential and stage-related expression in embryonic tissues of a new human homeobox gene. Nature 324: 664-668.
38. McGinris, W., and Krumlauf, R. (1992). Homeobox genes and axial patterning. Cell 68: 283-302.
39. McGinris, W., Hart, C. P., Gehring, W. J., and Ruddle, F. H. (1984a). Molecular cloning and chromosome mapping of a mouse DNA sequence homologous to homeotic genes of Drosophila. Cell 38: 675-680.
40. McGinris, W., Levine, M. S., Hafen, E., Kuroiwa, A., and Gehring, W. J. (1984b). A conserved DNA sequence in homeotic genes of the Drosophila Antennapedia and bithorax complexes. Nature 308: 428-433.
41. Mlodzik, M., Fjose, A., and Gehring, W. J. (1988). Molecular structure and spatial expression of a homeobox gene from the labial region of the Antennapedia-complex. EMBO -7. 7: 2569-2578.
42. Murtha, M. T., Leckman, J. F., and Ruddle, F. H. (1991). Detection of homeobox genes in development and evolution. Proc. Natl. Acad Sci. LLSA 88: 10711-10715.
43. Nazarali, A., Kim, Y., and Nirenberg, M. (1992). Hox-1.11 and Hox-4.9 homeobox genes. Proc. Nall. Acad. Sci. USA 89: 2883- 2887.
44. Oliver, G., Vispo, M., Mailhos, A., Martínez, C., Sosa-Pineda, B., Fielitz, W., and Ehrlich, R. (1992). Homeoboxes in flatworms. Gene 121: 337-342.
45. Regulski, M., Harding, K., Kostriken, R., Karch, F., Levine, M., and McGinnis, W. (1985). Horneo box genes of the Antennapedia and bithorax complexes of Drosophila. Cell 43: 71-80.
46. Rushlow, C., Doyle, H., Hoey, T., and Levine, M. (1987). Molecular characterization of the zerknullt region of the Antennapedia gene complex in Drosophila. Genes Dev. 1: 1268-1279.
47. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989). “Molecular Cloning: A Laboratory Manual," Cold Spring Harbor Laboratory Press. Cold Spring Harbor. NY.
48. Sasaki, H., Yokoyama, E., and Kuroiwa, A. (1990). Specific DNA binding of the two chicken Deformed family homeodomain proteins. Chox-1.4 and Chox-a. Nucleic Acids Res. 18: 1739-1747.
49. Schaller, D., Wittmann, C., Spicher, A., Müller, F., and Tobler, H. (1990). Cloning and sequence analysis of three new homeobox genes from the nematode Caenorhabditis elegans. Nucleic Acids Res. 18: 2033-2036.
50. Schierwater, B., Murtha, M., Dick, M., Ruddle, F. H., and Buss, L. W. (1991). Homeoboxes in cnidarians. J. Exp. Zool. 260: 413-416.
51. Schubert, F. R., Nieselt-Struwe, K., and Gruss, P. (1993). The Anten-napedia-type homeobox genes have evolved from three precursors separated early in metazoan evolution. Proc. Nall. Acad. Sci. USA 90: 143-147.
52. Schughart, K., Kappen, C., and Ruddle, F. H. (1989). Duplication of large genomic regions during the evolution of vertebrate homeobox genes. Proc. Natl. Acad. Sci. USA 86: 7067-7071.
53. Schummer, M., Scheurlen, I., Schaller, C., and Galliot, B. (1992). HOM HOX homeobox genes are present in hydra iChlorohydra viridissimaI and are differentially expressed during regeneration. EMBO J. 11: 1815-1818.
54. Scott, M. P. (1992) Vertebrate homeobox gene nomenclature. Cell 71: 551-553.
55. Scott, M. P., and Weiner, A. J. (1984) Structural relationships among genes that control development: Sequence homology between the Antennapedia. Ultrabithorax, and fushi tarazu loci of Drosophila. Proc. Natl. Acad. Sci. USA 81: 4115-4119.
56. Scott, M. P., Tamkun, J. W., and Hartzell, G. W., 3d. (1989). The structure and function of the homeodomain. Biochim. Biophys. Acta 989: 25-48.
57. Shashikant, C. S., Utset, M. F., Violette, S. M., Wise, T. L., Einat, P., Einat, M., Pendleton, J. W., Schughart, K., and Ruddle, F. H. (1991). Homeobox genes in mouse development. Crit. Rev. Euk. Gene Expression 1: 207-245.
58. Sundin, O. H., Busse, H. G., Rogers, M. B., Gudas, L. J., and Eichele, G. (1990). Region-specific expression in early chick and mouse embryos of Ghox-lab and Hox 1.6, vertebrate homeobox-containing genes related to Drosophila labial. Development 108: 47-58.
59. Swofford, D. L. (1990). “PAUP: Phylogenetic Analysis Using Parsimony,” Illinois Natural History Survey, Champaign, Illinois.
60. Walldorf, U., Fleig, R., and Gehring, W. J. (1989). Comparison of homeobox-containing genes of the honeybee and Drosophila. Proc. Natl. Acad. Sci. USA 86: 9971-9975.
61. Webster, P. J., and Mansour, T. E. (1992). Conserved classes of ho-meodomains in Schistosoma mansoni, an early bilateral metazoan. Mech. Dev. 38: 25-32.
62. Wedden, S. E., Pang, K., and Eichele, G. (1989). Expression pattern of homeobox-containing genes during chick embryogenesis. Development 105: 639-650.
63. Wright, C. V., Cho, K. W., Fritz, A., Burglin, T. R., and De Robertis, E. M. (1987). A Xenopus laevis gene encodes both homeobox-containing and homeobox-less transcripts. EMBO J. 6: 4083-4094.
64. Wysocka-Diller, J. W., Aisemberg, G. O., Baumgarten, M., Levine, M., and Macagno, E. R. (1989). Characterization of a homologue of bithorax-complex genes in the leech Hirudo medicinalis. Nature 341: 760-763.