Codon preference in Corynebacteria

Gene

Volumn 134, Issue 1, 1993, Pages 15-24

  Malumbres, Marcos ^a   Gil, JoséA ^a   Martín, Juan F ^a  

^a Faculty of Biology   (Spain)

Author keywords

Brevibacterium lactofermentum; Corynebacterium diphtheriae; Corynebacterium glutamicum; G + C content; gene expression; Gram+; molecular evolution; mutation pressure; synonymous codon usage

Indexed keywords

CYTOSINE; GLUTAMIC ACID; GUANINE;

ARTICLE; BREVIBACTERIUM; CODON; CODON USAGE; CORYNEBACTERIUM; NONHUMAN; PRIORITY JOURNAL;

BASE SEQUENCE; BREVIBACTERIUM; CODON; CORYNEBACTERIUM; DNA, BACTERIAL; GENE EXPRESSION; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SUPPORT, NON-U.S. GOV'T;

BREVIBACTERIUM; CORYNEBACTERIA; CORYNEBACTERIUM DIPHTHERIAE; CORYNEBACTERIUM GLUTAMICUM; ESCHERICHIA COLI; STREPTOMYCES;

EID: 0027494947     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/0378-1119(93)90169-4     Document Type: Article

References (31)

1. Production of 2-keto-l-gluconate, an intermediate in l-ascorbate synthesis, by a genetically modified Erwinia herbicola
2. Codon preferences in free-living microorganisms
3. Codon selection in yeast
4. Identification, sequence analysis, and expression of a Corynebacterium glutamicum gene cluster encoding the three glycolytic enzymes glyceraldehyde-3-phosphate dehydrogenase, 3-phosphoglycerate kinase, and triosephosphate isomerase
5. Discrimination of Corynebacterium glutamicum, Brevibacterium flavum and Brevibacterium lactofermentum by restriction pattern analysis of DNA adjacent to the hom gene
6. Codon usage and gene expression
7. Codon usage in bacteria: correlation with gene expressivity
8. The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression
9. Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes
10. Evolutionary change in 5S rRNA secondary structure and a phylogenetic tree of 352 rRNA species
11. Correlation between the abundance of E. coli transfer RN As and the occurrence of the respective codons in its protein genes
12. Cloning and nucleotide sequence of the csp1 gene encoding PS1, one of the two major secreted proteins of Corynebacterium glutamicum: the deduced N-terminal region of PS1 is simillar to the Mycobacterium antigen 85 complex
13. Irregular nonsporing Gram-positive rods
14. Glutamic acid bacteria
15. The use of a rare codon specifically during development?
16. T to Corynebacterium glutamicum and their distinction by rRNA gene restriction patterns
17. CODONS: a microcomputer program for codon usage analysis
18. Molecular genetics of amino acid-producing corynebacteria
19. The guanine and cytosine content of genomic DNA and bacterial evolution
20. Role of GC-biased mutation pressure on synonymous codon choice in Micrococcus luteus, a bacterium with high genomic GC-content
21. Phylogenetic analysis of the coryneform bacteria by 5S rRNA sequences
22. A cluster of three genes (dapA, orf2 and dapB) of Brevibacterium lactofermentum encodes dihydrodipicolinate synthase, dihydrodipicolinate reductase and a third polypeptide of unknown function
23. Processes of genome evolution reflected by base frequency differences among Serratia marcescens genes
24. Selective differences among translation termination codons
25. Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity
26. Codon usage in Bacillus subtilis
27. Molecular cloning, nucleotide sequence and fine-structural analysis of the Corynebacterium glutamicum fda gene: structural comparison of C. glutamicum fructose-1,6-bisphosphate aldolase to class I and class II aldolase
28. Bacterial evolution
29. The ‘effective number of codons’ used in a gene
30. Codon usage in the G + C-rich Streptomyces genome
31. Taxonomic studies on coryneform bacteria III DNA base composition of coryneform bacteria