Identification of the auxin-responsive element, AuxRE, in the primary indoleacetic acid-inducible gene, PS-IAA4/5, of pea (Pisum sativum)

Journal of Molecular Biology

Volumn 233, Issue 4, 1993, Pages 580-596

  Ballas, Nurit ^a   Wong, Lu Min ^a   Theologis, Athanasios ^a  

^a PLANT GENE EXPRESSION CENTER   (United States)

Author keywords

Auxin; Development regulation; Pea protoplasts; Plant hormone action; Promoter analysis

Indexed keywords

EUKARYOTA; FELIS CATUS; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM; PISUM SATIVUM; SATIVUM;

EID: 0027367255     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1993.1537     Document Type: Article

References (59)

1. Ainley, W. M., Walker, J. C., Nagao, R. T. & Key, J. L. (1988). Sequence and characterization of two auxin-regulated genes from soybean. J. Biol. Chem. 263, 10658-10666.
2. Alton, N. K. & Vapnek, D. (1979). Nucleotide sequence analysis of the chloramphenicol resistance transposon Tn9. Nature (London), 282, 864-869.
3. An, G., Ebert, P. R., Mitra, A. & Ha, S. B. (1988). Binary vectors. In Plant Molecular Biology Manual (Gelvin S. B. & Schilperoot, R. A., eds), pp. AB/1-19, Kluwer Academic Publ., The Netherlands.
4. Baeuerle, P. A. & Baltimore, D, (1988). ΙκΒ: a specific inhibitor of the NF-kB transcription factor. Science, 242, 540-546.
5. Balias, N., Broido, S. Soreq, H, & Loyter, A. (1989). Efficient functioning of plant promoters and poly(A) sites in Xenopus oocytes. Nucl. Acids Res. 17, 7891-7903.
6. Beato, M. (1989). Gene regulation by steroid hormones. Cell, 56, 335-344.
7. Boorstein, W. R. & Craig, E. A. (1989). Primer extension analysis of RNA. Methods Enzymol. 180, 347-369.
8. Chirgwin, J. M., Przybyla, A. E., MacDonald, R. J. & Rutter, W. J. (1979). Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry, 18, 5294-5299.
9. Conner, T. W., Goekjian, V. H., LaFayette, P. R. & Key, J. L. (1990). Structure and expression of two auxin-inducible genes from Arabidopsis. Plant Mol. Biol. 15, 623-632.
10. David, M. & Larner, A. C. (1992). Activation of transcription factors by interferon-alpha in a cell-free system. Science, 257, 813-815.
11. Davis, R. W-, Botstein, D. & Roth, J. R. (1980). Advanced Bacterial Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
12. Ettlinger, C. & Lehle, L. (1988). Auxin induces rapid changes in phosphatidylinositol metabolites. Nature (London), 331, 176-178.
13. Evans, M. L. & Ray, P. M. (1969). Timing of the auxin response in coleoptiles and its implications regarding auxin action. J. Gen. Physiol. 53, 1-20.
14. Feinberg, A. P. & Vogelstein, B. (1983). A technique for radiolabeling DNA restriction endonuclease fragments to high specific acivity. Anal. Biochem. 132, 6-13.
15. Feldwisch, J., Zettl, R., Hesse, F., Schell, J. & Palme, K. (1992). An auxin-binding protein is localized to the plasma membrane of maize coleoptile cells: identification by photoaffinity labeling and purification of a 23-kDa polypeptide. Proc. Nat. Acad. Sei., U.S.A. 89, 475-79.
16. Franco, A. R., Gee, M. A. & Guilfoyle, T. J. (1990). Induction and superinduction of auxin-responsive mRNAs with auxin and protein synthesis inhibitors. J. Biol. Chem. 265, 15845-15849.
17. Galas, D. J. & Schmitz, A. (1978). DNAase foot-printing: a simple method for the detection of protein-DNA binding specificity. Nucl. Acids Res. 5, 3157-3170.
18. Ghosh, D. (1990). A relation database of transcription factors. Nucl. Acids Res. 18, 1749-1756.
19. Glimelius, K. (1984). High growth rate and regeneration capacity of hypocotyl protoplasts in some Brassicaceae. Physiol. Plant, 61, 38-44.
20. Gorman, C. M., Moffat, L. F. & Howard, B. H. (1982). Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells. Mol. Cell. Biol. 2, 1044-1051.
21. Green, P. J., Kay, S. A., Lam, E. & Chua, N.-H. (1988). In vitro DNA footprinting. In Plant Molecular Biology Manual (Gelvin, S. B. & Schilperoot, R. A., eds), pp, B11/1-22, Kluwer Academic Publ., The Netherlands.
22. Greenberg, M. E., Hermanowski, A. L. & Ziff, E. B. (1986). Effect of protein synthesis inhibitors on growth factor activation of c-fos, c-myc and actin gene transcription. Mol. Cell. Biol. 6, 1050-1057.
23. Hagen, G. & Guilfoyle, T. J. (1985). Rapid induction of selective transcription by auxins. Mol. Cell. Biol. 5, 1197-1203.
24. Henikoff, S. (1984). Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene, 28, 351-359.
25. Hicks, G. R., Rayle, D. L., Jones, A. M, & Lomax, T. L. (1989). Specific photoaffmity labeling of two plasma membrane polypeptides with an azido auxin. Proc. Nat. Acad. Sei., U.S.A. 86, 4948-1952.
26. Tnnis, M. A, & Gelfard, D. H. (1990). Optimizations of PCRs. In PCR Protocols: A Guide to Methods and Applications (Innis, M. A., Gelfard, D. H., Sninsky, J. J. & White, T. J., eds). pp. 3-12, Academic Press, Inc., New York
27. Jacobs, M. & Ray, P. M. (1976). Rapid auxin-induced decrease in free space pH and its relationship to auxin-induced growth in maize and pea. Plant Physiol. 58, 203-209.
28. Jefferson, R. A., Kavanagh, T. A. & Bevan, Μ. V. (1987). GUS fusions: ß-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBOJ. 6, 3901-3907.
29. Johnston, M. (1987). A model fungal gene regulatory mechanism: The GAL genes of Saccharomyces cerevisiae. Microbiol. Rev. 51, 458-476.
30. Korber, H., Strizhov, N., Staiger, D, Feldwisch, J., Olsson, O., Sanberg, G., Palme, K., Schell, J, & Koncz, C. (1991). T-DNA gene 5 of Agrobacterium modulates auxin response by autoregulated synthesis of a growth hormone antagonist in plants. EMBOJ. 10, 3983-3991.
31. Krens, F. A., Molendijk, L, Wullems, G. J. & Schilperoot, R. A. (1982). In vitro transformation of plant protoplasts with Ti-plasmid DNA. Nature (London), 296, 72-74.
32. Leuther, K. K. & Johnston, S. A. (1992). Nondissociation of GAL4 and GAL80 in vivo after galactose induction. Nature (London), 226, 1333-1335.
33. Lüthe, D. S. & Quatrano, R. S. (1980). Transcription in isolated wheat nuclei: isolation of nuclei and elimination of endogenous ribonuclease activity. Plant Physiol. 65, 305-308.
34. Maxam, A. M. & Gilbert, W. (1977). A new method for sequencing DNA. Proc. Nat. Acad. Sei U S A 74 560-564.
35. McClure, B. A. &Guilfoyle, T. (1987). Characterization of a class of small auxin-inducible soybean polyadenylated RNAs. Plant. Mol. Biol. 9, 611- 623.
36. Montminy, M. R., Sevarino, K. A., Wagner, J. A., Mandel, G. & Goodman, R. H. (1986). Identification of a cyclic-AMP responsive element within the rat somatostatin gene. Proc. Nat. Acad. Sei., U.S.A. 83, 6682-6686.
37. Murashige, T. & Skoog, F. (1962). A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plant. 15, 473-497.
38. Nagy, J. I. & Maliga, P. (1976). Callus induction and plant regeneration from mesophyll protoplasts of Nicotiana sylvestris. Z. Pflanzenphysiol. 78, 453-455.
39. Oeller, P. W., Keller, J. A., Parks, J. E., Silbert, J. E. & Theologis, A. (1993). Structural characterization of the early indoleacetic acid-inducible genes, PS-IAA4/5 and PS-IAA6, of pea (Pisum sativum L.). J. Mol. Biol. 233, 789-798.
40. Ow, D. W., Jacobs, J. D. & Howell, S. H. (1987). Functional regions of the cauliflower mosaic virus 35S RNA promoter determined by use of the firefly luciferase gene as a reporter of promoter activity. Proc. Nat. Acad. Sei., U.S.A. 84, 487-874.
41. Parker, P. J, (1991). An overview of signal transduction. In The Hormonal Control Regulation of Gene Transcription (Cohen, P. & Foulkes, J. G., eds), pp. 77-98, Elsevier Science Publishers BV, Amsterdam, The Netherlands.
42. Prasad, P. V. & Jones, A. M. (1991). Putative receptor for the plant growth hormone auxin identified and characterized by anti-idiotypic antibodies. Proc. Nat. Acad. Sei., U.S.A. 88, 5479-5483.
43. Rogers, S. G., Horsch, R. B. & Fraley, R. T. (1986). Gene transfer in plants: production of transformed plants using Ti plasmid vectors. Methods Enzymol. 118, 627-640.
44. Sam brook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edit. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
45. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc. Nat. Acad. Sei., U.S.A. 74, 5463-5467.
46. Seed, B. (1982). Diazotizable arylamine cellulose papers for the coupling and hybridization of nucleic acids. Nucl. Acids Res. 10, 1799-1810.
47. Takahashi, Y., Niwa, Y., Machida, Y. & Nagata, T. (1990). Location of the cis-acting auxin responsive region in the promoter of the par gene from tobacco protoplasts. Proc. Nat. Acad. Sei., U.S.A. 87, 8013-8016.
48. Theologis, A. (1986). Rapid gene regulation by auxin. Annu. Rev. Plant Physiol. 37, 407-438.
49. Theologis, A, & Ray, P. M. (1982). Early auxin regulated polyadenylated mRNA sequences in pea stem tissue. Proc. Nat. Acad. Sei., U.S.A. 79, 418-421.
50. Theologis, A., Huynh, T. V. & Davis, R. W. (1985). Rapid induction of specific mRNAs by auxin in pea epicotyl tissue. J. Mol. Biol. 183, 53-68.
51. Tillmann, U., Viola, G., Kayser, B., Siemeister, G., Hesse, T., Palme, K., Lobler, M. & Klambt, D. (1989). cDNA clones of the auxin-binding protein from corn coleoptiles (Zea mays L.): isolation and characterization by immunological methods, EMBOJ. 8, 2463-2467.
52. Van der Zaal, E. J., Memelink, J., Mennes, A. M., Quint, A. & Libbenga, K. R. (1987). Auxin-induced mRNA species in tobacco cell cultures. Plant Mol. Biol. 10, 145-157.
53. Van der Zaal, E. J., Droog, F. N. J., Boot, C. J. M., Hensgens, L. A. M., Hoge, J. H. C., Schilperoot, R. A. & Libbenga, K. R. (1991). Promoters of auxin-induced genes from tobacco can lead to auxin-inducible and root tip-specific expression. Plant Mol. Biol. 16, 983-998.
54. Vanderhoef, L. N. (1980). Auxin-regulated elongation: a summary hypothesis. In Plant Growth Substances 1979 (Skoog, F., ed.), pp. 90-96, Springer-Verlag, Berlin.
55. + RNAs of elongating soybean hypocotyl. Proc. Nat, Acad. Sei., U.S.A. 79, 7185-7189.
56. Went, F. W. & Thimann, K. V. (1937). In Phytohormones, Macmillan, New York.
57. Yamamoto, K. T., Mori, H. & Imaseki, H, (1992). cDNA cloning of indole-3-acetic acid-regulated genes: Aux22 and SAUR from mung bean (Vigna radiata) hypocotyl tissue. Plant Cell Physiol. 33, 93-97.
58. Zabel, U. & Baeuerle, P. A. (1990). Purified human IxB can rapidly dissociate the complex of the NF-jcB transcription factor with its cognate DNA. Cell, 61, 255-265.
59. Zurfluh, L. L. & Guilfoyle, T. J, (1982). Auxin-induced changes in the population of translatable messenger RNA in elongating sections of soybean hypocotyl. Plant Physiol. 69, 332-337.