PCR-amplified microsatellites as markers in plant genetics

Plant Journal

Volumn 3, Issue 1, 1993, Pages 175-182

  Morgante, M ^a   Olivieri, A M ^a  

^a UNIVERSITY OF UDINE   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA; EMBRYOPHYTA; GLYCINE MAX;

SATELLITE DNA;

ARTICLE; FEASIBILITY STUDY; GENETIC MARKER; GENETICS; INFORMATION SYSTEM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT; POLYMERASE CHAIN REACTION; SOYBEAN;

BASE SEQUENCE; DNA, SATELLITE; FEASIBILITY STUDIES; GENETIC MARKERS; INFORMATION SYSTEMS; MOLECULAR SEQUENCE DATA; PLANTS; POLYMERASE CHAIN REACTION; SOYBEANS; SUPPORT, NON-U.S. GOV'T;

EID: 0027357965     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-313x.1993.tb00020.x     Document Type: Article

References (36)

1. Apuya, N., Frazier, B., Keim, P., Roth, E.J. and Lark, K.G. (1988) Restriction fragment length polymorphisms as genetic markers in soybean, Glycine max (L.) Merr. Theor. Appl. Genet. 75, 889-901.
2. Beckmann, J.S. and Soller, M. (1990) Toward a unified approach to genetic mapping of eukaryotes based on sequence tagged microsatellite sites. Bio/Technology, 8, 930-932.
3. 35S label as an aid to rapid DNA sequence determination. Proc. Natl Acad. Sci. USA, 80, 3963-3965.
4. Braaten, D.C., Thomas, J.R., Little, R.D., Dickson, K.R., Goldberg, I., Schlessinger, D., Ciccodicola, A. and D'Urso, M. (1988) Locations and contexts of sequences that hybridize to poly(dG-dT).(dC-dA) in mammalian ribosomal DMAs and two X-linked genes. Nucl. Acids Res. 16, 865-881.
5. Brook, J.D., McCurrach, M.E., Harley, H.G., et al. (1992) Molecular basis of myotonic dystrophy: expansion of a trinucleotide (CTG) repeat at the 3′ end of a transcript encoding a protein kinase family member. Cell, 68, 799-808.
6. Devereux, J., Haeberli, P. and Smithies, O. (1984) A comprehensive set of sequence analysis programs for the VAX. Nucl. Acids Res. 12, 387-395.
7. Doyle, J.J. and Doyle, J.L. (1990) Isolation of plant DNA from fresh tissue. Focus, 12, 13-15.
8. Edwards, A., Civitello, A., Hammond, H.A. and Caskey, T.C. (1991) DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am. J. Hum. Genet. 49, 746-756.
9. Fu, Y.H., Kuhl, O.P.A., Pizzuti, A., et al. (1991) Variation of the CGG repeat at the fragile X site results in genetic instability: resolution of the Sherman paradox. Cell, 67, 1047-1058.
10. Garchon, H.-J. and Bach, J.-H. (1992) Mouse map fills the gap. Curr Biol. 2, 268-270.
11. Hamada, H., Petrino, M.G. and Kakunaga, T. (1982) A novel repeated element with Z-DNA-forming potential is widely found in evolutionarily diverse eukaryotic genomes. Proc. Natl Acad. Sci. USA, 79, 6465-6469.
12. Hong, J.C., Nagao, R.T. and Key, J.L. (1987) Characterization and sequence analysis of a developmentally regulated putative cell wall protein gene isolated from soybean. J. Biol. Chem.. 262, 8367-8376.
13. Keim, P., Shoemaker, R.C. and Palmer, R.G. (1989) Restriction fragment length polymorphism diversity in soybean. Theor. Appl. Genet. 77, 786-792.
14. Kidd, K.K. (1991) Progress towards completing the human linkage map. Curr. Opinions Genet. Dev. 1, 99-104.
15. La Spada, A.R., Wilson, E.M., Lubahn, D.B., Harding, A.E. and Fischbeck, K.H. (1991) Androgen receptor gene mutations in X-linked spinal and bulbar muscular atrophy. Nature, 352, 77-79.
16. Levinson, G. and Gutman, G.A. (1987) Slipped-strand mispairing: a major mechanism for DMA sequence evolution. Mol. Biol. Evol. 4, 203-221.
17. Litt, M. and Luty, J.A. (1989) A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am. J. Hum. Genet. 44, 388-396.
18. Love, J.M., Knight, A.M., McAleer, M.A. and Todd, J.A. (1990) Toward construction of a high resolution map of the mouse genome using PCR-analysed microsatellites. Nucl. Acids Res. 18, 4123-4130.
19. n polynucleotide: a probe for gene flow and paternity studies in wild plant populations? Nucl. Acids Res., 20, 1153.
20. Luty, J.A., Guo, Z., Willord, H.F., Ledbetter, D.H., Ledbetter, S. and Litt, M. (1990) Five polymorphic microsatellite VNTRs on the human X chromosome. Am. J. Hum. Genet. 46, 776-783.
21. Moore, S.S., Sargeant, L.L., King, T.J., Mattick, J.S., Georges, M. and Hetzel, D. J.S. (1991) The conservation of dinucleotide microsatellites among mammalian genomes allows the use of heterologous PCR primer pairs in closely related species. Genomics, 10, 654-660.
22. Nagao, R.T., Czarnecka, E., Gurley, W.B., Schoeffl, F. and Key, J.L. (1985) Genes for low-molecular-weight heat shock proteins of soybeans: Sequence analysis of a multigene family. Mol. Cell. Biol. 5, 3417-3428.
23. Nelson, D.L. (1991) Applications of polymerase chain reaction methods in genome mapping. Curr. Opinions Genet. Dev. 1, 62-68.
24. n forms left handed Z-DNA in negatively supercoiled plasmids. Proc. Natl Acad. Sci. USA, 80, 1821-1825.
25. Olson, M., Hood, L., Cantor, C. and Botstein, D. (1989) A common language for physical mapping of the human genome. Science, 245, 1434-1435.
26. Saiki, R.K., Gelfand, D.H., Stoffel, S., Scharf, S.J., Higuchi, R., Horn, G.T., Mullis, K.B. and Erlich, H.A. (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science, 239, 487-491.
27. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual 2nd Edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
28. Schafer, R., Ali, S. and Epplen, J.T. (1986) The organization of the evolutionarily conserved GATA/GACA repeats in the mouse genome. Chromosoma, 93, 502-510.
29. Schloetterer, C., Amos, B. and Tautz, D. (1991) Conservation of polymorphic simple sequence loci in cetacean species. Nature, 354, 63-65.
30. n repetitive sequences in mammalian genomes. Genomics, 10, 807-815.
31. Tautz, D. (1989) Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucl. Acids Res. 17, 6463-6471.
32. Tautz, D. and Renz, M. (1984) Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucl. Acids Res. 12, 4127-4138.
33. Vergnaud, G. (1989) Polymers of random short oligonucleotides detect polymorphic loci in the human genome. Nucl. Acid Res. 17, 7623-7630.
34. n polymorphisms. Genomics, 7, 524-530.
35. Weber, J.L. and May, P.E. (1989) Abundant class of human DNA polymorphism which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44, 388-396.
36. Weising, K., Weigand, F., Driesel, A.J., Kahl, G., Zischler, H. and Epplen, J.T. (1989) Polymorphic simple GATA/GACA repeats in plant genomes. Nucl. Acids Res. 17, 10 128.