Quantitative sequence-activity models (QSAM) - tools for sequence design

Nucleic Acids Research

Volumn 21, Issue 3, 1993, Pages 733-739

  Jonsson, Jögen ^a   Norberg, Torbjörn ^a,b   Carlsson, Lena ^a,b   Gustafsson, Claes ^a,b   Wold, Svante ^a  

^a Department of Organic Chemistry ^*  (Sweden)

^b UMEÅ UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT;

ARTICLE; DNA SEQUENCE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; REGRESSION ANALYSIS; STRUCTURE ACTIVITY RELATION;

BASE COMPOSITION; BASE SEQUENCE; BIOPOLYMERS; DNA; GENETIC VECTORS; MODELS, CHEMICAL; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; PROMOTER REGIONS (GENETICS); SUPPORT, NON-U.S. GOV'T;

EID: 0027298171     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/21.3.733     Document Type: Article

References (34)

1. Hawley, D.K. and McClure, R.W. (1983) Nucleic Adds Res., 11, 2237 -2255.
2. Staden, R. (1984) Nucleic Acids Res., 12, 505 -519.
3. Hariey, C.B. and Reynolds, R.P. (1987) Nucleic Adds Res., 15, 2343 -2361.
4. Galas, D.J., Eggeit, M. and Waterman, M.S. (1985) J. Mol. Biol., 186, 117-128.
5. Cardon, L.R. and Stormo, G.D. (1992) J. Mol. Biol., 223, 159-170.
6. Mulligan, M.E., Hawley, D.K., Entriken, R. and Mc Clure R.W. (1984) Nucleic Adds Res., 12, 789 — 800.
7. Kämmerer, W., Deuschle, U., Gentz, R. and Bujard, H. (1986) EMBOJ., 5, 2995 - 3000.
8. Knaus, R. and Bujard, H. (1990) Eckstein, F. and Lilley, D.M.J. (ed.) Nucleic Acids and Molecular Biology, Springer-Verlag, Berlin Heidelberg, Vol. 4, pp. 110-121.
9. Van Heel, M. (1991) J. Mol. Biol., 220, 877-887.
10. Jonsson, J., Eriksson, L., Hellberg, S., Lindgren, F., Sjöström, M. and Wold, S. (1991) Acta Chem. Scand., 45, 186-192.
11. Brunak, S., Engelbrecht, J. and Knudsen, S. (1990) Nucleic Acids Res., 18, 4797 -4801.
12. Demeler, B. and Zhou, G. (1991) Nucleic Adds Res., 19, 1593-1599.
13. O’Neill M.C. (1991) Nucleic acids Res., 19, 313-318.
14. Hellberg, S, Eriksson, L., Jonsson, J., Lindgren, F., Sjöström, M., Skagerberg, B., Wold, S. and Andrews, P. (1991) Int. J. Protein Res., 37, 414-424.
15. Wold, S., Eriksson, L., Hellberg, S., Jonsson, J., Sjöström, M., Skagerberg, B. and Wikström, C. (1987) Can. J. Chem., 65, 1814 — 1820.
16. Jonsson, J., Eriksson, L., Hellberg, S., Sjöström, M. and Wold, S. (1989) Quant. Struct.-Act. Relat., 8, 204 —209.
17. Brunner, M. and Bujard, H. (1987) EMBO J., 6, 3139 - 3144.
18. Knaus, R. and Bujard, H. (1988) EMBO J., 7, 2919 -2923.
19. Lanzer, M. and Bujard, H. (1988) Proc. NatL Acad. Sd., 85, 8973 - 8977.
20. Dobrynin, V.N., Kobrobko, V.G., Severtsova, I.V., Bystrov, N.S., Chuvpilo, S.A., Kolosov, M.N. and Shemyakin M.M. (1980) Nucleic Adds Res., Symp. Ser. 7, 365 - 376.
21. J.E. Jackson, (1991) A Users Guide to Prindpal Components, John Wiley &andSons, New York, USA.
22. JoUiffe, I.T. (1986) Principal Component Analysis, Springer Verlag, New York, pp. 200-204.
23. Martens H. and Naes T. (1991) Multivariate Calibration, John Wiley &andSons, Chichester, USA.
24. E.R. Malinowski (1991) Factor Analysis in Chemistry, 2nd ed. John Wiley &andSons, New York, USA, pp. 49-58, 169-172.
25. Gower, J.C. (1966) Biometrica, 53, 325-338.
26. Wold, S. (1978) Technometrics, 20, 397 -405.
27. Dunn, III, WJ., Wold, S., Edlund, U., Hellberg, S. and Gasteiger, J., (1984) Quant. Struct. -Act. Relat. 131 — 137.
28. Sawadogo, M. and Van Dyke, M.W., (1991) Nucleic Adds Res., 19, 674.
29. Sambrook J, Fritsch, E.F. &andManiatis, T. (1989) Molecular Cloning A Laboratory Manual, Nolan, C. (ed.) 2nd ed., Cold Spring Harbor Laboratory Press, New York, pp. 754 - 55.
30. Jacquet, M.A. and Reiss, C. (1990) Nucleic Acids Res., 18, 1173-1143.
31. Cavener, D.R. and Ray, S.C. (1991) Nucleic Adds Res., 19, 3185 - 3192.
32. Grafta, D., Gaiddla, T. and Susskirel, M.M. (1988) Genetics, 120, 319-327.
33. Box, G.E.P. and Draper, N.R. (1987) Empirical Model Building and Response Surfaces, John Wiley &andSons, New York, pp. 1 -17.
34. Maddox, J. (1992) Nature, 355, 201.