Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple nucleotide substitutions contribute to enzyme evolution

MGG Molecular & General Genetics

Volumn 239, Issue 1-2, 1993, Pages 81-89

  Harayama, Shigeaki ^a   Rekik, Monique ^a  

^a UNIVERSITY OF GENEVA   (Switzerland)

Author keywords

Biodegradation; Evolution; Mutation; Pseudornonas putida; TOL plasmid

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; DNA STRUCTURE; EVOLUTION; GENETIC ORGANIZATION; MUTATION; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE SEQUENCE; OPERON; PLASMID; PRIORITY JOURNAL; PSEUDOMONAS PUTIDA;

AMINO ACID SEQUENCE; BASE SEQUENCE; COMPARATIVE STUDY; DNA, BACTERIAL; EVOLUTION; GENES, BACTERIAL; INTRONS; MOLECULAR SEQUENCE DATA; OPERON; PLASMIDS; PSEUDOMONAS PUTIDA; SUPPORT, NON-U.S. GOV'T; TOLUENE; XYLENES;

EID: 0027232202     PISSN: 00268925     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/BF00281605     Document Type: Article

References (47)

1. The TOL plasmids: determinants of the catabolism of toluene and the xylenes
2. The use of fluorescein isothiocyanate in the determination of the bacterial biomass of grassland soil
3. Nucleotide sequence and expression of the catechol 2,3-dioxygenase-encoding gene of phenol catabolizing Pseudomonas CF600
4. Location and gene organization of the dimethylphenol catabolic genes of Pseudomonas CF600
5. Nucleotide sequence of xylE from the TOL pDKI plasmid and structural comparison with isofunctional catechol-2,3-dioxygenase genes from TOL pWW0 and NAH7
6. The origin of mutants
7. A constant rate of spontaneous mutation in DNA-based microbes
8. Spontaneous mutation
9. Fidelity mechanisms in DNA replication
10. Nucleotide sequence and expression of gene nahH of plasmid NAH7 and homology with gene xylE of TOL pWWO
11. Aquatic bacteria: measurements and significance of growth
12. Directed evolution of a bacterial operon
13. Adaptive evolution that requires multiple spontaneous mutations: mutations involving base substitutions
14. The meta cleavage operon of TOL degradative plasmid pWW0 comprises 13 genes
15. Catabolism of aromatic hydrocarbons by Pseudomonas
16. Aerobic biodegradation of aromatic hydrocarbons by bacteria
17. Evolutionary relationships between catabolic pathways for aromatics conservation of gene order and nucleotide sequences of catechol oxidation genes of pWWO and NAH7 plasmids
18. Characterization of five genes in the upper-pathway operon of TOL plasmid pWW0 from Pseudomonas putida and identification of the gene products
19. Physically associated enzymes produce and metabolize 2-hydroxy-2,4-dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putida
20. Divergent evolution of chloroplast-type ferredoxins
21. Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, gene encoding benzoate dioxygenases
22. Mutational modification of the substrate specificity of catechol 2,3-dioxygenase encoded by TOL plasmid pWW0 of Pseudomonas putida
23. Theoretical foundations for a quantitative approach to paleogenetics. Part 1: DNA
24. DNA sequence determination of the TOL plasmid (pWWO) xylGIJ genes of Pseudomonas putida: implications for the evolution of aromatic catabolism
25. Molecular analysis of regulatory and structural xyl genes of the TOL plasmid pWW53-4
26. Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population genetics
27. Molecular considerations in the evolution of bacterial genes
28. The evolution of multigene families: human haptoglobin genes
29. Nucleotide sequence divergence and functional constraint in mRNA evolution
30. Complete nucleotide sequence of the metapyrocatechase gene on the TOL plasmid of Pseudomonas putida mt-2
31. Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases
32. Cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily
33. Nucleotide sequence of the meta-cleavage pathway enzymes 2-hydroxymuconic semialdehyde dehydrogenase and 2-hydroxymuconic semialdehyde hydroxylase from Pseudomonas CF600
34. Complete nucleotide sequences and polypeptide analysis of multicomponent phenol hydroxylase from Pseudomonas sp strain CF600
35. Evolution in bacteria: evidence for a universal substitution rate in cellular genomes
36. The presence of two complete homologous meta pathway operons on TOL plasmid pWW53
37. DNA sequencing with chain-terminating inhibitors
38. Physical and functional mapping of two cointegrate plasmids derived from RP4 and TOL plasmid pDKI
39. Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp strain CF600
40. A Pseudomonas putida strain able to degrade m-toluate in the presence of 3-chlorocatechol
41. Organization of and relationships between catabolic genes of TOL plasmids
42. Construction of hybrid xylE genes between the two duplicate homologous genes from TOL plasmid pWW53: comparison of the kinetic properties of the gene products
43. Catabolic gene duplications in TOL plasmids
44. Metabolism of toluene and xylenes by Pseudomonas putida (arvilla) mt-2: evidence for a new function of the TOL plasmid
45. Plasmid gene organization: Naphthalene/salicylate oxidation
46. Nucleotide sequence analysis of the Pseudomonas putida PpG7 salicylate hydroxylase gene nahG and its 3′-flanking region