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Volumn 7, Issue 6, 1993, Pages 769-780

Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes

Author keywords

Gag; Genetic variation; Genotype; HIV 1; International; Phylogenetic analysis

Indexed keywords

GAG PROTEIN;

EID: 0027219687     PISSN: 02699370     EISSN: None     Source Type: Journal    
DOI: 10.1097/00002030-199306000-00003     Document Type: Article
Times cited : (327)

References (29)
  • 1
    • 0025745525 scopus 로고
    • Rapid spread of pandemic in Asia dismays experts, spurs efforts to fight transmission
    • GOLDSMITH MF: Rapid spread of pandemic in Asia dismays experts, spurs efforts to fight transmission. JAMA 1991, 266:1048-1049.
    • (1991) JAMA , vol.266 , pp. 1048-1049
    • Goldsmith, M.F.1
  • 2
    • 0025239805 scopus 로고
    • Thailand: AIDS crisis looms
    • SMITH DG: Thailand: AIDS crisis looms. Lancet 1990, 335:781-782.
    • (1990) Lancet , vol.335 , pp. 781-782
    • Smith, D.G.1
  • 4
    • 0024267430 scopus 로고
    • Fidelity of HIV-1 reverse transcriptase
    • PRESTON BD, POIESZ BJ, LOEB LA: Fidelity of HIV-1 reverse transcriptase. Science 1988, 242:1168-1171.
    • (1988) Science , vol.242 , pp. 1168-1171
    • Preston, B.D.1    Poiesz, B.J.2    Loeb, L.A.3
  • 5
    • 0024273119 scopus 로고
    • The accuracy of reverse transcriptase from HIV-1
    • ROBERTS JD, BEBENEK K, KUNKEL TA: The accuracy of reverse transcriptase from HIV-1. Science 1988, 242:1171-1173.
    • (1988) Science , vol.242 , pp. 1171-1173
    • Roberts, J.D.1    Bebenek, K.2    Kunkel, T.A.3
  • 6
    • 85034937450 scopus 로고
    • Identification of conserved and divergent domains within the envelope gene of the acquired immunodeficiency syndrome retrovirus of AIDS
    • WILLEY R, RUTLEDGE A, DIAS S, ET AL.: Identification of conserved and divergent domains within the envelope gene of the acquired immunodeficiency syndrome retrovirus of AIDS. Cell 1986, 45:637-648.
    • (1986) Cell , vol.45 , pp. 637-648
    • Willey, R.1    Rutledge, A.2    Dias, S.3
  • 7
    • 0023107134 scopus 로고
    • Computer-assisted analysis of envelope protein sequences of seven human immunodeficiency virus isolates: Prediction of antigenic epitopes in conserved and variable regions
    • MODROW S, HAHN BS, SHAW GM, GALLO RC, WONG-STAAL F, WOLF F: Computer-assisted analysis of envelope protein sequences of seven human immunodeficiency virus isolates: prediction of antigenic epitopes in conserved and variable regions. J Virol 1986, 61:570-578.
    • (1986) J Virol , vol.61 , pp. 570-578
    • Modrow, S.1    Hahn, B.S.2    Shaw, G.M.3    Gallo, R.C.4    Wong-Staal, F.5    Wolf, F.6
  • 8
    • 0025253821 scopus 로고
    • Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1
    • SIMMONDS P, BALFE P, LUDLAM CA, BISHOP JO, LEIGH BROWN AJ: Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1. J Virol 1990, 64:5840-5850.
    • (1990) J Virol , vol.64 , pp. 5840-5850
    • Simmonds, P.1    Balfe, P.2    Ludlam, C.A.3    Bishop, J.O.4    Leigh Brown, A.J.5
  • 9
    • 0024337928 scopus 로고
    • HIV-1 isolates are rapidly evolving quasispecies, evidence for viral mixtures and preferred nucleotide substitutions
    • GOODENOW M, HUET T, SAURIN W, KWOK S, SNINSKY J, WAINHOBSON S: HIV-1 isolates are rapidly evolving quasispecies, evidence for viral mixtures and preferred nucleotide substitutions. J Acquir Immune Defic Syndr 1989, 2:344-352.
    • (1989) J Acquir Immune Defic Syndr , vol.2 , pp. 344-352
    • Goodenow, M.1    Huet, T.2    Saurin, W.3    Kwok, S.4    Sninsky, J.5    Wainhobson, S.6
  • 10
    • 0024469503 scopus 로고
    • Temporal fluctuations in HIV quasispecies in vivo are not reflected by sequential HIV isolations
    • MEYERHANS AR, CHEYNIER J, ALBERT M, ET AL.: Temporal fluctuations in HIV quasispecies in vivo are not reflected by sequential HIV isolations. Cell 1988, 58:901-910.
    • (1988) Cell , vol.58 , pp. 901-910
    • Meyerhans, A.R.1    Cheynier, J.2    Albert, M.3
  • 11
    • 0025630004 scopus 로고
    • Evolution of sequences encoding the principal neutralization epitope of human immunodeficiency virus type 1 is host-dependent, rapid, and continuous
    • WOLFS TFW, DE JONG J, VAN DEN BERG H, TUNAGEL JMGH, KRONE WJA, GOUDSMIT J: Evolution of sequences encoding the principal neutralization epitope of human immunodeficiency virus type 1 is host-dependent, rapid, and continuous. Proc Natl Acad Sci USA 1990, 87:9938-9942.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 9938-9942
    • Wolfs, T.F.W.1    De Jong, J.2    Van Den Berg, H.3    Tunagel, J.M.G.H.4    Krone, W.J.A.5    Goudsmit, J.6
  • 12
    • 0025787509 scopus 로고
    • HIV-1 gag-specific cytotoxic T lymphocytes recognize multiple highly conserved epitopes
    • JOHNSON RP, TROCHA A, YANG L, ET AL.: HIV-1 gag-specific cytotoxic T lymphocytes recognize multiple highly conserved epitopes. J Immunol 1991, 147:1512-1521.
    • (1991) J Immunol , vol.147 , pp. 1512-1521
    • Johnson, R.P.1    Trocha, A.2    Yang, L.3
  • 13
    • 0025879336 scopus 로고
    • HLA-binding regions of HIV-1 proteins. II. A systematic study of viral proteins
    • CHIPPIN J, MARTINON F, CONNAN F, PAUCHARD M, GOMARD E, LEVY JP: HLA-binding regions of HIV-1 proteins. II. A systematic study of viral proteins. J Immunol 1991, 147:575-583.
    • (1991) J Immunol , vol.147 , pp. 575-583
    • Chippin, J.1    Martinon, F.2    Connan, F.3    Pauchard, M.4    Gomard, E.5    Levy, J.P.6
  • 14
    • 0026087289 scopus 로고
    • Humoral immune responses to Gag and Env proteins from human immunodeficiency virus type 1 in hemophiliac patients
    • KINNEY JS, CONWAY JH, HILGARTNER MW, ET AL.: Humoral immune responses to Gag and Env proteins from human immunodeficiency virus type 1 in hemophiliac patients. Am J Hematol 1991, 36:35-41.
    • (1991) Am J Hematol , vol.36 , pp. 35-41
    • Kinney, J.S.1    Conway, J.H.2    Hilgartner, M.W.3
  • 15
    • 0025970368 scopus 로고
    • Immune response to a major epitope of p24 during infection with human immunodeficiency virus type 1 and implications for diagnosis and prognosis
    • JANVIER B, BAILLOU A, ARCHINARD P, ET AL.: Immune response to a major epitope of p24 during infection with human immunodeficiency virus type 1 and implications for diagnosis and prognosis. J Clin Microbiol 1991, 29:88-92.
    • (1991) J Clin Microbiol , vol.29 , pp. 88-92
    • Janvier, B.1    Baillou, A.2    Archinard, P.3
  • 17
    • 85034943242 scopus 로고
    • Genetic analysis of HIV-1 isolates from Zambia and an expanded phylogenetic tree for HIV-1
    • MCCUTCHAN FE, UNGAR BLP, HEGERICH P, ET AL.: Genetic analysis of HIV-1 isolates from Zambia and an expanded phylogenetic tree for HIV-1. J Acquir Immune Defic Syndr 1991, 4:1241-1250.
    • (1991) J Acquir Immune Defic Syndr , vol.4 , pp. 1241-1250
    • Mccutchan, F.E.1    Ungar, B.L.P.2    Hegerich, P.3
  • 18
    • 0025250615 scopus 로고
    • Isolation of HIV-1 from the blood of seropositive adults: Patient stage of illness and sample inoculum size are major determinants of a positive culture
    • BURKE DS, FOWLER AK, REDFIELD RR, DILWORTH S, OSTER CN: Isolation of HIV-1 from the blood of seropositive adults: patient stage of illness and sample inoculum size are major determinants of a positive culture. J Acquir Immune Defic Syndr 1990, 3:1149-1167.
    • (1990) J Acquir Immune Defic Syndr , vol.3 , pp. 1149-1167
    • Burke, D.S.1    Fowler, A.K.2    Redfield, R.R.3    Dilworth, S.4    Oster, C.N.5
  • 19
    • 0023930281 scopus 로고
    • DNA amplification for direct detection of HIV-1 in DNA of peripheral blood mononuclear cells
    • OU CY, KWOK S, MITCHELL SW, ET AL.: DNA amplification for direct detection of HIV-1 in DNA of peripheral blood mononuclear cells. Science 1988, 239:295-297.
    • (1988) Science , vol.239 , pp. 295-297
    • Ou, C.Y.1    Kwok, S.2    Mitchell, S.W.3
  • 20
    • 0026605537 scopus 로고
    • CLUSTAL V: Improved software for multiple sequence alignment
    • HIGGINS DG, BLEASBY AJ, FUCHS R: CLUSTAL V: improved software for multiple sequence alignment. Comput Appl Biosci 1992, 8:189-191.
    • (1992) Comput Appl Biosci , vol.8 , pp. 189-191
    • Higgins, D.G.1    Bleasby, A.J.2    Fuchs, R.3
  • 21
    • 0000122573 scopus 로고
    • PHYLIP - Phylogenetic Inference Package
    • Version 3.2
    • FELSENSTEIN J: PHYLIP - Phylogenetic Inference Package (Version 3.2). Cladistics 1989, 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 24
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU N, NEI M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 25
    • 0027919703 scopus 로고
    • The powers and pitfalls of parsimony
    • STEWART CB: The powers and pitfalls of parsimony. Nature 1993, 361:603-607.
    • (1993) Nature , vol.361 , pp. 603-607
    • Stewart, C.B.1
  • 26
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • FELSENSTEIN J: Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 27
    • 0025187935 scopus 로고
    • Nucleotide sequence of a Ugandan HIV-1 provirus reveals genetic diversity from other HIV-1 isolates
    • ORAM JD, DOWING RG, ROFF M, ET AL.: Nucleotide sequence of a Ugandan HIV-1 provirus reveals genetic diversity from other HIV-1 isolates. AIDS Res Hum Retroviruses 1990, 6:1073-1078.
    • (1990) AIDS Res Hum Retroviruses , vol.6 , pp. 1073-1078
    • Oram, J.D.1    Dowing, R.G.2    Roff, M.3
  • 28
    • 0025996121 scopus 로고
    • The genetic fate of molecularly cloned simian immunodeficiency virus in experimentally infected macaques
    • JOHNSON PR, HAMM TE, GOLDSTEIN S, KITOV S, HIRSCH VM: The genetic fate of molecularly cloned simian immunodeficiency virus in experimentally infected macaques. Virology 1991, 185:217-228.
    • (1991) Virology , vol.185 , pp. 217-228
    • Johnson, P.R.1    Hamm, T.E.2    Goldstein, S.3    Kitov, S.4    Hirsch, V.M.5
  • 29
    • 0024420340 scopus 로고
    • Significance of premature stop codons in env of simian immunodeficiency virus
    • KODAMA T, WOOLEY DP, NAIDU YM, ET AL.: Significance of premature stop codons in env of simian immunodeficiency virus. J Virol 1989, 63:4709-4714.
    • (1989) J Virol , vol.63 , pp. 4709-4714
    • Kodama, T.1    Wooley, D.P.2    Naidu, Y.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.