Compilation, alignment, and phylogenetic relationships of DNA polymerases

Nucleic Acids Research

Volumn 21, Issue 4, 1993, Pages 787-802

  Braithwaite, Dan K ^a   Ito, Junetsu ^a  

^a UNIVERSITY OF ARIZONA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE;

AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; ENZYME STRUCTURE; ESCHERICHIA COLI; ISOELECTRIC POINT; MOLECULAR WEIGHT; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY;

AMINO ACID SEQUENCE; ANIMAL; DNA POLYMERASE I; DNA POLYMERASE II; DNA POLYMERASE III; HUMAN; ISOELECTRIC POINT; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SUPPORT, U.S. GOV'T, P.H.S.;

EID: 0027217643     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/21.4.787     Document Type: Article

References (71)

1. Ito, J. and Braithwaite, D.K. (1991) Nucl. Acids Res. 19, 4045-4057.
2. Wheelis, M.L., Kandler, O. and Woese, C.R. (1992) Proc. Nail. Acad. Sci. USA 89, 2930-2934.
3. Joyce, C. M., Kelley, W. S. and Grindley N. D. F. (1982) J. Biol. Chem. 257, 1958-1964.
4. Lopez, P., Martinez, S., Diaz, A., Espinosa, M. and Lacks, S. A. (1989) J. Biol. Chem. 264, 4255 - 4263.
5. Lawyer, F. C., Stoffel, S., Saild, R. K., Myambo, K., Drummond, R. and Gelfand, D. H. (1989) J. Biol. Chem. 264, 6427 - 6437.
6. Akhmetzjanov, A.A. and Vakhitov, V.A. (1992) Nud. Acids Res. 20, 5839.
7. Leavitt, M. C. and Ito, J. (1989) Proc. Natl. Acad. Sei. U.S.A. 86, 4465-4469.
8. Dunn, J. J. and Studier, F. W. (1983) J. Mol. Biol. 166, 477 - 535.
9. Scarlato, V. and Gargano, S. (1992) Gene 118, 109-113.
10. Rádén, B. and Rutberg, L. (1984) J. Virol. 52, 9-15.
11. Foury, F. (1989) J. Biol. Chem. 264, 20552-20560.
12. Ito, J. and Braithwaite, D.K. (1990) Nucl. Acids Res. 18, 6716.
13. Blanco, L., Bemad, A. and Salas, M. (1991) Nucl. Acids Res. 19, 955.
14. Hahn, S. and Rüger, W. (1989) Nucl. Acids Res. 17, 6729.
15. Hollingsworth, H.C. and Nossal, N.G. (1991) J. Biol. Chem. 266, 1888-1897.
16. Kaliman, A.V., Krutilina, A.I., Kryukov, V.M. and Bayev, A.A. (1986) FEBS Lett. 195, 61-64.
17. Iwasaki, H., Ishino, Y., Toh, H., Nakata, A. and Shinagawa, H. (1991) Mol. Gen. Genet. 226, 24 - 33.
18. Jung, G., Leavitt, M. C., Hsieh, J.-C. and Ito, J. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 8287- 8291.
19. Savilahti, H. and Bamford D.H. (1987) Gene 57, 121-130.
20. Yoshikawa, H. and Ito, J. (1982) Gene 17, 323-335.
21. Matsumoto, K., Takano, H., Kim, C. I. and Hirokawa, H. (1989) Gene 84, 247-255.
22. Spicer, E. K., Rush, J., Fung, C., Reha-Krantz, L. J., Karam, J. D. and Königsberg, W. H. (1988) J. Biol. Chem. 263, 7478-7486.
23. Perler, F.B., Comb, D.G., Jack, W.E., Moran, L.S., Qiang, B., Kucera, R.B., Benner, J., Slalko, B.E., Nwankwo, D.O., Hempstead, S.K., Carlow, C.K.S. and Jannasch, H. (1992) Proc. Nad. Acad. Sei. USA 89, 5577-5581.
24. Cline J.M., Scott, B.R., Adams, M.W.W., Sorge, J.A. and Mathur, E.J. Gene (in press).
25. Pisani F.M., De Martino, C. and Rossi, M. (1992) Nucl. Acids Res. 20, 2711-2716.
26. Wong, S. W., Wahl, A. F., Yuan, P.-M., Arai, N., Pearson, B. E., Arai, K.-i., Kom, D., Hunkapiller, M. W. and Wang, T.S.-F. (1988) EMBO J. 7, 37-47.
27. Pizzagalli, A., Valsasnini, P., Plevard, P. and Lucchini, G. (1988) Proc. Nad. Acad. Sei. U.S.A. 85, 3772-3776.
28. Damagnez, V., Tillit, J., de Recondo, A.-M. and Baldacci, G. (1991) Mol. Gen. Genet 226, 182-189.
29. Hirose, F., Yamaguchi, M., Nishida, Y., Masutani, M., Miyazawa, H., Hanaoka, F. and Matsukage, A. (1991) Nucl. Acids Res. 19, 4991-4998.
30. Leegwater, P.A.J., Stradng, M., Murphy, N.B., Kooy, R.F., van der Vliet, P.C. and Overdulve, J.P. (1991) Nucl. Acids Res. 19, 6441-6447.
31. Chung, D.W., Zhang, J., Tan C.-K., Davie, E.W., So, A.G. and Downey, K.M. (1991) Proc. Nad. Acad. Sei. USA 88, 11197-11201.
32. Yang, C.-L., Chang, L.-S., Zhang, P., Hao, H., Zhu, L., Tommey, N.L. and Lee, M.Y.W.T. (1992) Nucl. Acids Res. 20, 735-745.
33. Zhang, J., Chung, D.W., Tan, C.-K., Downey, K.M., Davie, E.W. and So, A.G. (1991) Biochemistry 30, 11742-11750.
34. Morrison, A. and Sugino, A. (1992) Nucl. Acids Res. 20, 375.
35. Pignéde, G., Bouvier, D., de Recondo, A.-M. and Baldacci, G. (1991) J. Mol. Biol. 222, 209-218.
36. Ridley, R.G., White, J.H., McAleese, S.M., Goman, M., Alano, P., de Vries, E. and Kilbey, B.J. (1991) Nucl. Acids Res. 19, 6731-6736.
37. Morrison, A., Araki, H., Clark, A.B., Hamatake, R.K. and Sugino, A. (1990) Cell 62, 1143-1151.
38. Morrison, A., Christensen, R. B., Alley, J., Beck, A. K., Bemstine, E. G., Lemontt, J. F. and Lawrence, C. W. (1989) J. Bacteriol. 171, 5659-5667.
39. Gibbs, J. S., Chiou, H. C., Hall, J. D., Mount, D. W., Retondo, M. J., Weller, S. K. and Coen, D. M. (1985) Proc. Nad. Acad. Sci. U.S.A. 82, 7969-7973.
40. Telford, E.A., Watson, M.S., McBride, K. and Davison, A.J. (1992) Virology 189, 304-316.
41. Davison, A. J. and Scott, J. E. (1986) J. Gen. Virol. 67, 1759-1816.
42. Baer, R., Bankier, A.T., Biggin, M.D., Deininger, P.L., Farrell, P.J., Gibson, T.J., Hatfidl, G., Hudson, G.S., Satchwell, S.C., Séguin, C., Tuflbed, P.S. and Barrell, B.G. (1984) Nature 310, 207-211.
43. Albrecht, J.-C. and Fleckenstein, B. (1990) Virology 174, 533-542.
44. Kouzarides, T., Bankier, A. T., Satchwed, S. C., Weston, K., Tomlinson, P. and Barred, B. G. (1987) J. Virol. 61, 125-133.
45. Ediott, R., Clark, C. Jaquish, D. and Spector, D.H. (1991) Virology 185, 169-186.
46. Teo, I.A., Griffin, B.E. and Jones, M.D. (1991) J. Virol. 65, 4670-4680.
47. Davison, A.J. (1992) Virology 186, 9-14.
48. Grabherr, R., Strasser, P. and Van Etten, J.L. (1992) Virology 188, 721-731.
49. Binns, M. M., Stenzler, L., Tomley, F. M., Campbed, J. and Boursned, M. E. G. (1987) Nucl. Acids Res. 15, 6563-6573.
50. Earl, P. L., Jones, E. V. and Moss, B. (1986) Proc. Nad. Acad. Sci. U.S.A. 83, 3659-3663.
51. Mustafa, A. and Yuen, L. (1991) DNA Seq. 2, 39-45.
52. Tomalski, M. D., Wu, J. and Miller, L. K. (1988) Virology 167, 591-600.
53. Bjomson, R.M. and Rohrmann, G.F. (1992) J. Gen. Virol. 73, 1499-1504.
54. Gingeras, T. R., Sciaky, D., Gelinas, R. E., Bing-Dong, J., Yen, C. E., Kedy, M. M., Bullock, P. A., Parsons, B. L., O’Neill, K. E. and Roberts, R. J. (1982) J. Biol. Chem. 257, 13475-13491.
55. Engler, J.A., Hoppe, M.S. and van Bree, M.P. (1983) Gene 21, 145-159.
56. Shu, L., Hong, J.S., Wei, Y.-f. and Engler, J.A. (1986) Gene 46, 187-195.
57. Paillard, M., Sederoff, R. R. and Levings, C. S. m (1985) EMBO J. 4, 1125-1128.
58. Chan, B.S.-S., Court, D.A., Vierula, P.J. and Bertrand, H. (1991) Curr. Genet. 20, 225-237.
59. Kempken, F., Meinhardt, F. and Esser, K. (1989) Mol. Gen. Genet. 218, 523-530.
60. Oeser, B. and Tudzynski, P. (1989) Mol. Gen. Genet. 217, 132-140.
61. Court D.A. and Bertrand, H. (1992) Curr. Genet. 22, 385-397.
62. Robison, M.M., Royer, J.C. and Horgen, P.A. (1991) Curr. Genet. 19, 495 - 502.
63. Stark, M.J.R., Mileham, A.J., Romanos, M.A. and Boyd, A. (1984) Nucl. Acids Res. 12, 6011-6030.
64. Tommasino, M., Ricci, S. and Galeotti, C. L. (1988) Nucl. Acids Res. 16, 5863-5878.
65. Hishinuma, F. and Hirai, K. (1991) J. Gen. Genet. 226, 97-106.
66. Tomasiewicz, H. G. and McHenry, C. S. (1987) J. Bacteriol. 169, 5735-5744.
67. Lancy, E. D., Lifsics, M. R., Munson, P. and Maurer, R. (1989) J. Bacteriol. 171, 5581-5586.
68. Hammond, R. A., Barnes, M. H., Mack, S. L., Mitchener, J. A. and Brown, N. C. (1991) Gene 98, 29 -36.
69. Maki, H., Horiuchi, T. and Sekiguchi, M. (1983) Proc. Natl. Acad. Sei. USA 80, 7137-7141.
70. Joyce, C.M., Ollis, D.L., Rush, J., Steitz, T.A., Königsberg, W.H. and Grindley, N.D.F. (1986) in ‘Protein structure, folding and design (UCLA Symposia on Molecular and Cellular Biology, Vol 32)’, D. Oxender, Ed., pp 197-205, Alan R. Liss.
71. Felsenstein, J. (1989) Cladistics 5, 164-166.