The DNA Strand in DNA·RNA Hybrid Duplexes is Neither B-form nor A-form in Solution

Biochemistry

Volumn 32, Issue 16, 1993, Pages 4207-4215

  Salazar, Miguel ^a   Fedoroff, Oleg Y ^b   Miller, Julie M ^a   Ribeiro, N Susan ^a   Reid, Brian R ^a  

^a Department of Chemistry ^*  (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHIMERA; CIRCULAR DICHROISM; CONFORMATIONAL TRANSITION; DNA RNA HYBRIDIZATION; DNA STRAND; GENETIC LINKAGE; NONHUMAN; PRIORITY JOURNAL; RELAXATION TIME; VIRUS REPLICATION;

BASE SEQUENCE; CARBOHYDRATE CONFORMATION; DEOXYRIBOSE; DNA; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HYBRIDIZATION; OLIGODEOXYRIBONUCLEOTIDES; OLIGORIBONUCLEOTIDES; RIBOSE; RNA; SOLUTIONS; SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, P.H.S.;

EID: 0027190862     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi00067a007     Document Type: Article

References (48)

1. Alam, T. M., Orban, J., & Drobny, G. P. (1991) Biochemistry 30, 9229-9237.
2. Aliona, C., & Sundaralingam, M. (1972) J. Am. Chem. Soc. 94, 8205-8212.
3. Arnott, S., Chandrasekaran, R., Hall, I. H., & Puigjaner, L. C. (1983) Nucleic Acids Res. 11, 4141-4155.
4. Arnott, S., Chandrasekaran, R., Millane, R. P., & Park, H.-S. (1986) J. Mol. Biol. 188, 631-640.
5. Bax, A., & Lerner, L. (1988) J. Magn. Reson. 79, 429-438.
6. Benevides, J. M., & Thomas, G. J., Jr. (1988) Biochemistry 27, 3868-3873.
7. Celda, B., Widmer, H., Leupin, W., Chazin, W. J., Denny, W. A., & Wüthrich, K. (1990) Biochemistry 28, 1462-1471.
8. Cheng, J.-W., Chou, S.-H., & Reid, B. R. (1992) J. Mol. Biol. 228, 1037-1041.
9. Chou, S.-H., Flynn, P., & Reid, B. R. (1989a) Biochemistry 28, 2422-2435.
10. Chou, S.-H., Flynn, P., & Reid, B. R. (1989b) Biochemistry 28, 2435-2443.
11. Chou, S.-H., Flynn, P., Wang, A., & Reid, B. R. (1991) Biochemistry 30, 5248-5257.
12. Chou, S.-H., Cheng, J.-Y., Fedoroff, O. Y., Chuprina, V. P., & Reid, B. R. (1992a) J. Am. Chem. Soc. 114, 3114-3115.
13. Chou, S.-H., Cheng, J.-W., & Reid, B. R. (1992b) J. Mol. Biol. 228, 138-155.
14. Drobny, G., Pines, A., Sinton, S., Weitekamp, D.P.,& Wemmer, D. E. (1970) Faraday Symp. Chem. Soc. No. 13, 49-55.
15. Fujiwara, T., & Shindo, H. (1985) Biochemistry 24, 896-902.
16. Gochin, M., Zon, G., & James, T. L. (1990) Biochemistry 29, 11161-11171.
17. Gray, D. M., & Ratliff, R. L. (1975) Biopolymers 14, 487-498.
18. Griesinger, C., Sorensen, O. W., & Ernst, R. R. (1985) J. Am. Chem. Soc. 107, 6394-6396.
19. Griesinger, C., Sorensen, O. W., & Ernst, R. R. (1986) J. Chem. Phys. 85, 6837-6852.
20. Griesinger, C., Sorensen, O. W., & Ernst, R. R. (1987) J. Magn. Reson. 75, 474-492.
21. Gupta, G., Sarma, M. H., & Sarma, R. H. (1985) J. Mol. Biol. 186, 463-469.
22. Gupta, G., Sarma, M. H., & Sarma, R. H. (1986) Int. J. Quant. Chem., Quant. Biol. Symp. 12, 183-199.
23. Haasnoot, C. A. G., de Leeuw, F. A. A. M., & Aliona, C. (1980) Tetrahedron 36, 2783-2792.
24. Huang, W.-C., Orban, J., Kintanar, A., Reid, B. R., & Drobny, G. P. (1990) J. Am. Chem. Soc. 112, 9059-9068.
25. Katayanagi, K., Miyagawa, M., Matsushima, M., Ishikawa, M., Kanaya, S., Nakamura, H., Ikehara, M., Matsuzaki, T., & Morikawa, K. (1992) J. Mol. Biol. 223, 1029-1052.
26. Kim, S.-G., Lin, L.-J., & Reid, B. R. (1992) Biochemistry 31, 3564-3574.
27. Kintanar, A., Huang, W.-C., Schindele, D. C., Wemmer, D. E., & Drobny, G. (1989) Biochemistry 28, 282-293.
28. Kohlstaedt, L. A., Wang, J., Friedman, J. M., Rice, P. A., & Steitz, T. A. (1992) Science 256, 1783-1790.
29. Marion, D., & Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 113, 967-974.
30. Milman, G., Langridge, R., & Chamberlin, M. J. (1967) Proc. Natl. Acad. Sci. U.S.A. 57, 1804-1810.
31. Nakamura, H., Oda, Y., Iwai, S., Inoue, H., Ohtsuka, E., Kanaya, S., Kimura, S., Katsuda, C., Katayanagi, K., Morikawa, K., Miyashiro, H., & Ikehara, M. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 11535-11539.
32. O'Brien, E. J., & MacEwan, A. W. (1970) J. Mol. Biol. 48, 243-261.
33. Ogilvie, K. K., Usman, N., Nicoghosian, K., & Cedergren, R. J. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 5764-5768.
34. Pardi, A., Martin, F. H., & Tinoco, I., Jr. (1981) Biochemistry 20, 3986-3996.
35. Reid, D. G., Salisbury, S. A., Brown, T., Williams, D. H., Vasseur, J.-J., Rayner, B., & Imabach, J.-L. (1983) Eur. J. Biochem. 135, 307-314.
36. Rich, A. (1960) Proc. Natl. Acad. Sci. U.S.A. 46, 1044-1053.
37. Rinkel, L. J., & Aliona, C. (1987) J. Biomol. Struct. Dyn. 4, 621-631.
38. Salazar, M., Champoux, J. J., & Reid, B. R. (1993) Biochemistry 32, 739-744.
39. Sanford, D. G., Kotkow, K. J., & Stollar, B. D. (1988) Nucleic Acids Res. 16, 10643-10655.
40. Schmitz, U., Zon, G., & James, T. L. (1990) Biochemistry 29, 2357-2368.
41. Shindo, H., & Matsumoto, U. (1984) J. Biol. Chem. 259, 8682-8684.
42. States, D. J., Haberkorn, R. A., & Reuben, D. J. (1982) J. Magn. Reson. 48, 286-292.
43. Steely, H. T., Jr., Gray, D. M., & Ratliff, R. L. (1986) Nucleic Acids Res. 24, 10071-10090.
44. Stolarski, R., Egan, W., & James, T. L. (1992) Biochemistry 31, 7027-7042.
45. Tunis, M.-J.B., & Hearst, J. E. (1968) Biopolymers 6, 1218-1223.
46. van de Ven, F. J. M., & Hilbers, C. W. (1988) Eur. J. Biochem. 178, 1-38.
47. Wang, A. C., Kim, S.-G., Chou, S.-H., Orban, J., Flynn, P., & Reid, B. R. (1992) Biochemistry 31, 3940-3946.
48. Zimmerman, S. B., & Pheiffer, B. H. (1981) Proc. Natl. Acad. Sci. U.S.A. 78, 78-82.