Curvature: Software for the analysis of curved DNA

Bioinformatics

Volumn 9, Issue 4, 1993, Pages 435-440

  Shpigelman, E S ^a   Trifonov, E N ^b   Bolshoy, A ^a,b  

^a ARIEL UNIVERSITY   (Israel)

^b WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

CURVED DNA;

ARTICLE; COMPUTER PROGRAM; DNA DETERMINATION; DNA HELIX; DNA SEQUENCE; GEL ELECTROPHORESIS;

ALGORITHMS; ANIMAL; BASE SEQUENCE; CRITHIDIA FASCICULATA; DNA; DNA, BACTERIAL; DNA, KINETOPLAST; ESCHERICHIA COLI; GALACTOSE; LEISHMANIA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; SOFTWARE; SUPPORT, NON-U.S. GOV'T;

EID: 0027181196     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/9.4.435     Document Type: Article

References (11)

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2. Diekmann, S. and Wang, J.C. (1985) On the sequence determinants and flexibility of the kinetoplast DNA fragment with abnormal gel dectrophoretic mobilities. J. Mol. Biol., 186, 1-11.
3. EMBO Workshop (1989) Definitions and nomenclature of nucleic acid structure parameters. EMBO J., 8, 1, 1-4.
4. Kabsch, W., Sander, S. and Trifonov, E.N. (1982) The ten helical twist angles of B-DNA. Nucleic Acids Res., 10, 1097-1104.
5. Lavery, R. (1988) Junctions and bends in nucleic acids: a new theoretical modeling approach. In Olson, W.K., Sarma, M.H., Sarma, R.H. and Sundaralingam (eds), Structure and Expression, Vol. 3: DNA Bending and Curvature. Adenine Press, Schenectady, NY, pp. 191-211.
6. Lavigne, M., Herbert, M., Kolb, A. and Buc, H. (1992) Upstream curved sequences influence the initiation of transcription at the Escherichia coli galactose operon. J. Mol. Biol., 224, 293-306.
7. Linial, M. and Shlomai, J. (1988) A unique endonuclease from Crithidia fasciculata which recognizes a bend in the DNA helix. J Biol. Chan., 263, 290-297.
8. Premilat, S. and Albiser, G. (1983) Conformations of A-DNA and B-DNA in agreement with fiber X-ray and infrared dichroism. Nucleic Adas Res., 11, 1897-1908.
9. Trifonov, E.N. and Ulanovsky, L.E. (1987) Inherently curved DNA and its structural elements. In Wells, R.D. and Harvey, S.C. (eds), Unusual DNA Structures. Springer-Verlag, Berlin, pp. 173-187.
10. Trifonov, E.N. (1991) DNA in profile. Trends Biol Sci., 16, 467-470.
11. Zhuririn, V.B., Lysov Yu, P. and Ivanov, V.I. (1979) Anisotropie flexibility of DNA and the nucleosomal structure. Nucleic Acids Res., 6, 1081-1096