Highly informative typing of the human TNF locus using six adjacent polymorphic markers

Genomics

Volumn 16, Issue 1, 1993, Pages 180-186

  Udalova, Iaina A ^a   Nedospasov, Sergei A ^a   Webb, Glenda C ^b   Chaplin, David D ^b   Turetskaya, Regina L ^a  

^a ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0027151876     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1993.1156     Document Type: Article

References (22)

1. Beutler, B., and Cerami, A. (1988). Tumor necrosis, cachexia, shock, and inflammation: A common mediator. Annu. Rev. Biochem. 57: 505-538.
2. Carroll, M. C., Katzman, P., Alicot, E. M., Koller, B. H., Geraghty, D. E., Orr, H. T., Strominger, J. L., and Spies, T. (1987). Linkage map of the human major histocompatibility complex including the tumor necrosis factor genes. Proc. Natl. Acad. Sci. USA 84: 8535-8539.
3. Chamberlain, J. S., Gibbs, R. A., Ranier, J. E., and Caskey, C. T. (1990). Multiplex PCR for the diagnosis of Duchenne muscular dystrophy. In “PCR Protocols” (M. A. Innis, D. H. Geifand, J. J. Snisky, and T. J. White, Eds.), Academic Press, San Diego.
4. Clark, J. M. (1988). Novel non-template nucleotide addition reactions catalysed by procaryotic and eucaryotic DNA polymerases. Nucleic Acids Res. 16: 9677-9686.
5. Dunham, I., Sargent, C. A., Trowsdale, J., and Campbell, R. D. (1987). Molecular mapping of the human major histocompatibility complex by pulse-field gel electrophoresis. Proc. Natl. Acad. Sci. USA 84: 7237-7241.
6. Fugger, L., Morling, N., Ryder, L. P., Platz, P., Georgsen, J., Jakobsen, B. K., Svejgaard, A., Dalhoff, K., and Ranek, L. (1989). Ncol restriction fragment length polymorphism (RFLP) of the tumor necrosis factor (TNF alpha) region in primary biliary cirrhosis and in healthy Danes. Scand. J. Immunol. 30: 185-189.
7. Jongeneel, C. V., Acha-Orbea, H., and Blankenstein, T. (1990), A polymorphic microsatellite in the tumor necrosis factor a promoter identifies an allele unique to the NZW mouse strain. J. Exp. Med. 171: 2141-2146.
8. Jongeneel, C. V., Briant, L., Udalova, I. A., Sevin, A., Nedospasov, S. A., and Cambon-Thomsen, A. (1991). Extensive genetic polymorphism in the human tumor necrosis factor region and relation to extended HLA haplotypes. Proc. Natl. Acad. Sci. USA 88: 9717-9721.
9. Litt, M., and Luty, J. A. (1989), A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am. J. Hum. Genet. 44: 397-401.
10. Messer, G., Spengler, U., Jung, M. C., Honold, G., Biomer, K., Pape, G. R., Rietmuller, G., and Weiss, E. H. (1991). Polymorphic structure of the tumor necrosis factor (TNF) locus: An Ncol polymorphism in the first intron of the human TNF-ß gene correlates with a variant amino acid in position 26 and a reduced level of TNF-ß production. J. Exp. Med. 173: 209-219.
11. Nedospasov, S. A., Shakhov, A. N., Turetskaya, R. L., Mett, V. A., Georgiev, G. P., Korobko, V. G., Dobrynin, V. N., Filippov, S. A., Bystrov, N. S., Boldyreva, E. F., Chuvpilo, S. A., Chumakov, A. M., Shingarova, L. Y., Ovchinnikov, Yu. A. (1986). Tandem arrangement of the genes coding for tumor necrosis factor (TNF-o) and lymphotoxin (TNF-/3) inhuman genome. Cold Spring Harbor Symp. Quant. Biol. 51: 611-625.
12. Nedospasov, S. A., Udalova, I. A., Kuprash, D. V., and Turetskaya, R. L. (1991). DNA sequence polymorphism at the human TNF locus. Numerous TNF/LT alleles tagged by two closely linked microsatellites in the upstream region of lymphotoxin (TNF-ß) gene. J. Immunol. 147: 1053-1059.
13. Nedwin, G. E., Naylor, S. L., Sakaguchi, A., Smith, D., J arret-Nedwin, J., Pennica, D., Goeddel, D. V., and Gray, P. W. (1985). Human lymphotoxin and tumor necrosis factor genes: Structure, homology and chromosomal localization. Nucleic Acids Res. 13: 6361-6372.
14. Old, L. J. (1987). Tumor necrosis factor: Another chapter in the long story of endotoxin. Nature 330: 602-603.
15. Partanen, J., and Koskimies, S. (1988). Low degree of DNA polymorphism in the HLA-linked lymphotoxin (tumor necrosis factor ß) gene. Scand. J. Immunol. 28: 313-316.
16. Paul, N. L., and Ruddle, N. H, (1988). Lymphotoxin. Annu. Rev. Immunol. 6: 407-438.
17. Schlotterer, C., and Tautz, D. (1992). Slippage synthesis of simple sequence DNA. Nucleic Acids Res. 20: 211-215.
18. Spies, T., Morton, C. C., Nedospasov, S. A., Fiers, W., Pious, D., and Strominger, J. L. (1986). Genes for the tumor necrosis factors o and ß are linked to the human major histocompatibility complex. Proc. Nati. Acad. Sci USA S3: 8699-8702.
19. Tautz, D. (1989). Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res. 17: 6463-6471.
20. Webb, G. C., and Chaplin, D. D. (1990). Genetic variability at the human tumor necrosis factor loci. J. Immunol. 145: 1278-1285.
21. Weber, J. L., and May, P. E. (1989). Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44: 383-396.
22. Yang, S. Y., Milford, E., Hammerling, U., and Dupont, B. (1989). Description of the reference panel of B-lymphoblastoid cell lines for factors of the HLA system: The B-cell line panel designed for the Tenth International Histocompatibility Workshop. In “Immunobiology of HLA” (B. Dupont, Ed.), pp. 11-19, Springer-Verlag, New York.