The SRY high-mobility-group box recognizes DNA by partial intercalation in the minor groove: A topological mechanism of sequence specificity

Proceedings of the National Academy of Sciences of the United States of America

Volumn 90, Issue 24, 1993, Pages 11990-11994

  King, Chih Yen ^a   Weiss, Michael A ^a,b  

^a HARVARD MEDICAL SCHOOL   (United States)

^b MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

DNA binding proteins; Testis determining factor; Transcription factors; Two dimensional NMR spectroscopy

Indexed keywords

TRANSCRIPTION FACTOR;

ARTICLE; CRYSTAL STRUCTURE; DNA BINDING; DNA PROTEIN COMPLEX; DNA SEQUENCE; DNA STRUCTURE; ESCHERICHIA COLI; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; SEX DETERMINATION; Y CHROMOSOME;

BASE COMPOSITION; BASE SEQUENCE; DNA; DNA-BINDING PROTEINS; HUMAN; MAGNETIC RESONANCE SPECTROSCOPY; MALE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PROMOTER REGIONS (GENETICS); SUBSTRATE SPECIFICITY; SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, P.H.S.; TRANSCRIPTION FACTORS; Y CHROMOSOME;

ESCHERICHIA COLI;

EID: 0027142992     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.90.24.11990     Document Type: Article

References (37)

1. Steitz, T. A. (1990) Q. Rev. Biophys. 23, 205-280.
2. Pabo, C. O. & Sauer, R. T. (1992) Annu. Rev. Biochem. 61, 1053-1095.
3. Otwinowski, Z., Schevitz, R. W., Zhang, R.-G., Lawson, C. L., Joachimiak, A. & Sigler, P. B. (1988) Nature (London) 335, 321-329.
4. Koopman, P., Munsterberg, A., Capel, B., Vivian, N. & Lovell-Badge, R. (1990) Nature (London) 348, 450-452.
5. Laudet, V., Stehelin, D. & Clevers, H. (1993) Nucleic Acids Res. 21, 2493-2501.
6. Weir, H. M., Kraulis, P. J., Hill, C. S., Raine, A. R. C., Laue, E. D. & Thomas, J. O. (1993) EMBO J. 12, 1311-1319.
7. Lilley, D. M. J. (1992) Nature (London) 357, 282-283.
8. Haqq, C. M., King, C.-Y., Donahoe, P. K. & Weiss, M. A. (1993) Proc. Natl. Acad. Sci. USA 90, 1097-1101.
9. Smallcombe, S. H. (1993) J. Am. Chem. Soc. 115, 4776-4785.
10. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids (Wiley, New York).
11. Ferrari, S., Harley, V. R., Pontiggia, A., Goodfellow, P. N., Lovell-Badge, R. & Bianchi, M. E. (1992) EMBO J. 11, 4497-4506.
12. Giese, K., Cox, J. & Grosschedl, R. (1991) Genes Dev. 5, 2567-2578.
13. van der Wetering, M. & Clevers, H. (1992) EMBO J. 11, 3039-3044.
14. Bell, R. A., Everett, J. R., Hughes, D. W., Coddington, J. M., Alkema, D., Hader, P. A. & Neilson, J. (1985) J. Biomol. Struct. Dyn. 2, 693-707.
15. Zhang, X. & Patel, D. J. (1991) Biochemistry 30, 4026-4041.
16. Gilbert, D. E. & Feigon, J. (1991) Biochemistry 30, 2483-2494.
17. Dickerson, R. E. & Drew, H. R. (1981) J. Mol. Biol. 149, 761-786.
18. Calladine, C. R. & Drew, H. R. (1992) in Molecular Structure and Life: Molecular Recognition of Nucleic Acids, eds. Kyogoku, Y. & Nishimura, Y. (Japan Sci. Soc. Press, Tokyo), pp. 43-55.
19. Kouchakdjian, M., Li, B. F. L., Swann, P. F. & Patel, D. J. (1988) J. Mol. Biol. 202, 139-155.
20. Ptashne, M. (1986) Nature (London) 322, 697-701.
21. Kerppola, T. K. & Curran, T. (1991) Cell 66, 317-326.
22. Pil, P. M. & Lippard, S. J. (1992) Science 256, 234-237.
23. Bell, S. P., Pikaard, C. S., Reeder, R. H. & Tjian, R. (1989) Cell 59, 489-497.
24. Fisher, R. P., Parisi, M. A. & Clayton, D. A. (1989) Genes Dev. 3, 2202-2217.
25. Nasrin, N., Buggs, C., Goebl, M. & Alexander-Bridges, M. (1991) Nature (London) 354, 317-320.
26. Harley, V., Jackson, D. I., Hextall, P. J., Hawkins, J. R., Berkovitz, G. D., Sockanathan, S., Lovell-Badge, R. & Goodfellow, P. N. (1992) Science 255, 453-456.
27. Lamerichs, R. M. J. N., Boelens, R., van der Marel, G. A., van Boom, J. H., Kapstein, R., Buck, F., Fera, B. & Ruterjan, H. (1989) Biochemistry 28, 2985-2991.
28. Otting, G., Qian, Y. Q., Billeter, M., Müller, M., Affolter, M., Gehring, W. & Wüthrich, K. (1990) EMBO J. 9, 3085-3092.
29. Shirakawa, M., Matsuo, H., Serikawa, Y., Suzuki, N. & Kyogoku, Y. (1992) in Molecular Structure and Life: Molecular Recognition of Nucleic Acids, eds. Kyogoku, Y. & Nishimura, Y. (Japan Sci. Soc. Press, Tokyo), pp. 129-140.
30. Patel, D. J. & Canuel, L. L. (1979) Proc. Natl. Acad. Sci. USA 76, 24-28.
31. Lilley, D. M. J. & Clegg, R. M. (1993) Annu. Rev. Biophys. Biomol. Struct. 22, 299-328.
32. Starr, D. B. & Hawley, D. K. (1991) Cell 67, 1231-1240.
33. Strubin, M. & Struhl, K. (1992) Cell 68, 721-730.
34. Nikolov, D. B., Hu, S.-H., Lin, J., Gasch, A., Hoffman, A., Horikoshi, M., Chua, N.-H., Roeder, R. G. & Burley, S. K. (1992) Nature (London) 360, 40-46.
35. Vilain, E., Jaubert, F., Fellous, M. & Mclreavey, K. (1993) Differentiation 52, 151-159.
36. Kim, Y., Geiger, J. H., Hahn, S. & Sigler, P. B. (1993) Nature (London) 365, 512-520.
37. Kim, J. L., Nikolov, D. B. & Burley, S. K. (1993) Nature (London) 365, 520-527.