The chloroplast genome

Plant Molecular Biology

Volumn 19, Issue 1, 1992, Pages 149-168

  Sugiura, Masahiro ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

Cloroplast; DNA genome gene; intron; splicing; trans splicing

Indexed keywords

DNA;

CHLOROPLAST; CHROMOSOME MAP; GENE EXPRESSION; GENETICS; GENOME; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT; REVIEW;

BASE SEQUENCE; CHLOROPLASTS; CHROMOSOME MAPPING; DNA; GENE EXPRESSION; GENOME; MOLECULAR SEQUENCE DATA; PLANTS;

EID: 0026860017     PISSN: 01674412     EISSN: 15735028     Source Type: Journal    
DOI: 10.1007/BF00015612     Document Type: Article

References (128)

1. Nucleotide sequence of the clustered genes for the 44 kd chlorophyll a apoprotein and the ‘32 kd’-like protein of the photosystem II reaction center in the spinach plastid chromosome
2. Proteins encoded by a complex chloroplast transcription unit are each translated from both monocistronic and polycistronic mRNAs
3. Endonuclease recognition sites mapped on Zea mays chloroplast DNA
4. The structure of chloroplast DNA
5. Zea mays chloroplast ribosomal RNA genes are part of a 22,000 base pair inverted repeat
6. A primary transcript in spinach chloroplasts that completely lacks a 5′ untranslated leader region
7. Characterization of the barley chloroplast transcription units containing psaA-psaB and psbD-psbC
8. The wheat chloroplast gene for CF0 subunit I of ATP synthase contains a large intron
9. Transcriptional analysis of Endogenous and foreign genes in chloroplast transformants of Chlamydomonas
10. Nucleotide sequence of the split tRNA-Leu (UAA) gene from Vicia faba chloroplasts: evidence for structural homologies of the chloroplast tRNA-Leu intron with the intron from the autosplicable Tetrahymena ribosomal RNA precursor
11. 4.5S ribonucleic acid, a novel ribosome component in the chloroplasts of flowering plants
12. Chloroplast transformation in Chlamydomonas with high velocity microprojectills
13. Sigma-like activity from mustard (Sinapis alba L.) chloroplasts conferring DNA-binding and transcription specificity to E. coli core RNA polymerase
14. Mutant phenotypes support a trans-splicing mechanism for the expression of the tripartite psaA gene in the C. reinhardtii chloroplast
15. Euglena gracilis chloroplast ribosomal protein operon: a new chloroplast gene for ribosomal protein L5 and description of a novel organelle intron category designated group III
16. Complex RNA maturation pathway for a chloroplast ribosomal protein operon with an internal tRNA cistron
17. The isolation and characterization of DNA associated with chloroplast preparations
18. Identification of in vivo processing intermediates and of splice junctions of tRNAs from maize chloroplasts by amplification with the polymerase chain reaction
19. The chloroplast genome exists in multimeric forms
20. Chloroplast tRNA-Gly gene contains a long intron in the D stem: nucleotide sequences of tobacco chloroplast genes for tRNA-Gly (UCC) and tRNA-Arg(UCU)
21. Unusual organization of a ribosomal protein operon in the plastid genome of Cryptomonas Φ: evolutionary considerations
22. Fractionation and identification of spinach chloroplast transfer RNAs and mapping of their genes on the restriction map of chloroplast DNA
23. The chloroplast genome: its nature and role in development
24. In vitro transcription and DNA binding characteristics of chloroplast and etioplast extracts from mustard (Sinapis alba) indicate differential usage of the psbA promoter
25. Chloroplast proteins: synthesis, transport and assembly
26. Pea chloroplast ribosomal proteins: Characterization and site of synthesis
27. Identification and analysis of the maize P700 chlorophyll a proteins of PSI-A1 and PSI-A2 by high pressure liquid chromatography analysis and partial sequence determination
28. Two partially homologous adjacent light-inducible maize chloroplast genes encoding polypeptides of the P700 chlorophyll a-protein complex of photosystem I
29. Blue light regulates the accumulation of two psbD-psbC transcripts in barley chloroplasts
30. Light-dependent changes in psbD and psbC transcripts of barley chloroplasts: accumulation of two transcripts maintains psbD and psbC translation capability in mature chloroplasts
31. Nucleotide sequences of cDNAs encoding four complete nuclear-encoded plastid ribosomal proteins
32. Molecular genetics of chloroplast ribosomes in Chlamydomonas
33. A small chloroplast RNA may be required for trans-splicing in Chlamydomonas reinhardtii
34. Sequencing of 16S-23S spacer in a ribosomal RNA operon of Euglena gracilis chloroplast DNA reveals two tRNA genes
35. Genetics and synthesis of chloroplast membrane proteins in Photosynthesis
36. Nucleotide sequence of a wheat chloroplast gene encoding the proteolytic subunit of an ATP-dependent protease
37. Physical mapping of the Euglena gracilis chloroplast DNA and ribosomal RNA gene region
38. Accurate processing and pseudouridylation of chloroplast transfer RNA in a chloroplast transcription system
39. Chloroplast RNA: transcription and processing
40. A subpopulation of spinach chloroplast tRNA genes does not require upstream promoter elements for transcription
41. Biosynthesis of chloroplast transfer RNA in a spinach chloroplast transcription system
42. Identification and mutational analysis of the promoter for a spinach chloroplast transfer RNA gene
43. Analysis of promoter regions for the spinach chloroplast rbc L, atp B and psbA genes
44. Hybridization of maize chloroplast DNA with transfer ribonucleic acids
45. Genetics and molecular biology of plastids of higher plants
46. Proposals for the naming of chloroplast genes. II Update to the nomenclature of genes for thylakoid membrane polypeptides
47. Introns in Euglena and Nicotiana chloroplast protein genes
48. Transfer RNA genes of Euglena gracilis chloroplast DNA
49. Isolation of a transcriptionally active chromosome from chloroplasts of Euglena gracilis
50. Nucleotide sequence of the clustered genes for apocytochrome b6 and subunit 4 of the cytochrome b/f complex in the spinach plastid chromosome
51. Thylakoid membrane protein and their genes
52. The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals
53. Molecular basis of herbicide resistance in Amaranthus hybridus
54. Maize chloroplast RNA polymerase: the 180-, 120-, and 38-kilodalton polypeptides are encoded in chloroplast genes
55. Maize chloroplast RNA polymerase: the 78-kilodalton polypeptide is encoded by the plastid rpoC1 gene
56. Nucleotide sequence of the maize chloroplast rpo B/C1/C2 operon: comparison between the derived protein primary structures from various organisms with respect to functional domains
57. Identification of a plastid-specific ribosomal protein in the 30 S subunit of chloroplast ribosomes and isolation of the cDNA clone encoding its cytoplasmic precursor
58. Preferential transcription of cloned maize chloroplast DNA sequences by maize chloroplast RNA polymerase
59. Chloroplast gene for Mr 32 000 polypeptide of photosystem II in Euglena gracilis is interrupted by four introns with conserved boundary sequences
60. Sequencing of the 16S–23S Spacer in a ribosomal RNA operon of zea mays chloroplast DNA reveals two split tRNA genes
61. A nicked group II intron and trans-splicing in liverwort, Marchantia polymorpha, chloroplasts
62. Vicia faba chloroplast DNA has only one set of ribosomal RNA genes as shown by partial denaturation mapping and R-loop analysis
63. Nine introns with conserved boundary sequences in the Euglena gracilis chloroplast ribulose-1,5-bisphosphate carboxylase gene
64. A leucine-zipper motif in photosystem I
65. The maize chloroplast genes for the β and ε subunits of the photosynthetic coupling factor CF1 are fused
66. The intron of a plastid gene from a green alga contains an open reading frame for a reverse transcriptase-like enzyme
67. Structural and transcriptional analysis of two homologous genes for the P700 chlorophyll a-apoproteins in Chlamydomonas reinhardtii: evidence for in vivo trans-splicing
68. Mutation at the Chlamydomonas nuclear NAC2 locus specifically affects stability of the chloroplast psbD transcript encoding polypeptide D2 of PS II
69. DNA-dependent RNA polymerase of spinach chloroplasts: characterization of α-like and σ-like polypeptides
70. Polypeptides of DNA-dependent RNA polymerase of spinach chloroplast: characterization by antibody-linked polymerase assay and determination of sites of synthesis
71. Three distinct ribonucleoproteins from tobacco chloroplasts: each contains a unique amino terminal acidic domain and two ribonucleoprotein consensus motifs
72. DNA sequence requirements for the accurate transcription of a protein-coded plastid gene in a plastid in vitro system from mustard (Sinapis alba L.)
73. Physical maps of the two circular plastid DNA molecules of the brown alga Pylaiella littoralis (L.) Kjellm
74. Circular chloroplast DNA from Euglena gracilis
75. Presence of a 16S rRNA pseudogene in the bi-molecular plastid genome of the primitive brown alga Pylaiella littoralis. Evolutionary implication
76. Six chloroplast genes (ndh A to F) homologous to human mitochondrial genes encoding components of the respiratory-chain NADH dehydrogenase are actively expressed: determination of the splice-sites in ndh A and ndh B pre-mRNAs
77. Chloroplast gene sequence for the large subunit of ribulose bisphosphate carboxylase of maize
78. Cotranscription of the genes encoding two P700 chlorophyll a apoproteins with the gene for ribosomal protein CS14: determination of the transcriptional initiation site by in vitro capping
79. Conservation of RNA secondary structure in two intron families including mitochondrial-chloroplast-and nuclear-encoded members
80. The genes for the ribosomal proteins S12 and S7 are clustered with the gene for the EF-Tu protein on the chloroplast genome of Euglena gracilis
81. Chloroplast development and gene expression
82. Interaction of a 3' RNA region of the mustard trnK gene with chloroplast proteins
83. A tobacco chloroplast DNA sequence possibly coding for a polypeptide similar to E. coli RNA polymerase β subunit
84. Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA
85. Euglena gracilis chloroplast ribosomal RNA transcription units II. Nucleotide sequence homology between the 16S-23S ribosomal RNA spacer and the 16S ribosomal RNA leader regions
86. Chloroplast DNA exists in two orientations
87. Comparative organization of chloroplast genomes
88. Codon recognition mechanisms in plant chloroplasts
89. Nucleotide sequences of three soybean chloroplast tRNAs-Leu and re-examination of bean chloroplast tRNA2-Leu sequence
90. Introns in chloroplast protein-coding genes of land plants
91. Inverted repeat of Olisthodiscus luteus chloroplast DNA contains genes for both subunits of ribulose-1,5-bisphosphate carboxylase and the 32 000-dalton QB protein: phylogenetic implications
92. Anatomy of the chloroplast ribosomal DNA of Chlamydomonas reinhardtii
93. Chloroplast DNA in Chlamydomonas
94. Chloroplast DNA: physical and genetic studies
95. Chloroplast mRNA 3′ end processing requires a nuclear-encoded RNA-binding protein
96. The primary structure of 16S rDNA from Zea mays chloroplast is homologous to E. coli 10S rRNA
97. Light-induced switch in barley psbD-psbC promoter utilization: a novel mechanism regulating chloroplast gene expression
98. Rice chloroplast RNA polymerase genes: the absence of an intron in rpoC1 and the presence of an extra sequence in rpoC2
99. Pseudogenes and short repeated sequences in the rice chloroplast genome
100. Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
101. Intron in the gene for the ribosomal proteins S16 of tobacco chloroplast and its conserved boundary sequences
102. The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression
103. Spinach plastid genes coding for initiation factor IF-1, ribosomal protein S11 and RNA polymerase α-subunit
104. The soybean chloroplast genome: complete sequence of the rps 19 gene, including flanking parts containing exon 2 of rpl 2 (upstream), but lacking rpl 22 (downstream)
105. Protein PSII-G: an additional component of photosystem II identified through its plastid gene in maize
106. Control of plastid gene expression: 3′ inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription
107. Function of plastid mRNA 3′ inverted repeats: RNA stabilization and genespecific protein binding
108. A 3′ stem/loop structure of the Chlamydomonas chloroplast atpB gene regulates mRNA accumulation in vivo
109. Putative gene of tobacco chloroplast coding for ribosomal protein similar to E. coli ribosomal protein S19
110. Chloroplast genes coding for ribosomal proteins in land plants
111. The nucleotide sequence of 4.5S and 5S ribosomal RNA genes from tobacco chloroplasts
112. Genes for the eight ribosomal proteins are clustered on the chloroplast genome of tobacco (Nicotiana tabacum): similarity to the S10 and spc operons of Escherichia coli
113. Expression of the rpl23, rpl2 and rps19 genes in spinach chloroplasts
114. Six group I introns and three internal transcribed spacers in the chloroplast large subunit ribosomal RNA gene of the green alga Chlamydomonas eugametos
115. Structures of tobacco chloroplast genes for tRNA-Ile (CAU), tRNA-Leu (CAA), tRNA-Cys (GCA), tRNA-Ser (UGA) and tRNA-Thr (GGU): a compilation of tRNA genes from tobacco chloroplasts
116. Both the chloroplast and nuclear genomes of Chlamydomonas reinhardtii share homology with Escherichia coli genes for transcriptional and translational components
117. Photosystem I reaction-centre proteins contain leucine zipper motifs: a proposed role in dimer formation
118. Complex RNA maturation in chloroplasts: the psbB operon from spinach
119. Structure and topology of cytochrome f in pea chloroplast membranes
120. Peculiar feature of the organization of rRNA genes of the Chlorella chloroplast DNA
121. Diversity of a ribonucleoprotein family in tobacco chloroplasts: two new chloroplast ribonucleoproteins and a phylogenetic tree of ten chloroplast RNA-binding domains
122. The chloroplast gene for ribosomal protein CL23 is functional in tobacco
123. Trans splicing in vivo: joining of transcripts from the ‘divided’ gene for ribosomal protein S12 in the chloroplasts of tobacco
124. Binding and transcription of relaxed DNA templates by fractions of maize chloroplast extracts
125. Nucleotide sequence of the gene for the MR 32,000 thylakoid membrane protein from Spinacia oleracea and Nicotiana debneyi predicts a totally conserved primary translation product of MR 38,950
126. Structure of the genes for the β and ε subunit of spinach chloroplast ATPase indicates a'dicistronic mRNA and an overlapping translation stop/start signal
127. Evolution of higher-plant chloroplast DNA-encoded genes: implications for structure-function and phylogenetic studies