Kinetics and Thermodynamics of Triple-Helix Formation: Effects of Ionic Strength and Mismatches

Biochemistry

Volumn 31, Issue 38, 1992, Pages 9269-9278

  Rougee M ^a   Faucon, B ^a   Mergny, J L ^a   Giovannangeli, C ^a   Garestier, T ^a   Helene C ^a   Barcelo, F ^b  

^a MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^b UNIVERSITAT DE LES ILLES BALEARS   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; OLIGODEOXYRIBONUCLEOTIDE; PURINE NUCLEOSIDE;

ARTICLE; BASE PAIRING; DISSOCIATION CONSTANT; DNA DENATURATION; EQUILIBRIUM CONSTANT; MATHEMATICAL MODEL; NUCLEIC ACID STRUCTURE; NUCLEOTIDE SEQUENCE; POINT MUTATION; PRIORITY JOURNAL; TEMPERATURE DEPENDENCE; THERMODYNAMICS; TRIPLE HELIX; ULTRAVIOLET SPECTROPHOTOMETRY;

BASE COMPOSITION; BASE SEQUENCE; KINETICS; MAGNESIUM CHLORIDE; MATHEMATICS; MOLECULAR SEQUENCE DATA; MUTATION; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; NUCLEIC ACID RENATURATION; OLIGODEOXYRIBONUCLEOTIDES; OSMOLAR CONCENTRATION; THERMODYNAMICS;

ARRHENIUS;

EID: 0026795657     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi00153a021     Document Type: Article

References (36)

1. Anshelevich, V.V., Vologodskii, A.V., Lukashin, A.V., Frank-Kamenetskii, M.D. (1984) Biopolymers 23, 39-58.
2. Applequist, J., Damle, V. (1965) J. Am. Chem. Soc. 87, 1450-1468.
3. Arnott, S., Selsing, E. (1974) /. Mol. Biol. 88, 509-521.
4. Blake, R.D., Fresco, J.R. (1966) J. Mol. Biol. 19, 145-160.
5. Blake, R.D., Massoulte, J., Fresco, J.R. (1967) J. Mol. Biol. 30, 291-308.
6. Blake, R.D., Klotz, L.C., Fresco, J.R. (1968) J. Am. Chem. Soc. 90, 3556-3562.
7. Braulin, W.H., Bloomfield, V.A. (1991) Biochemistry 30, 754-758.
8. Breslauer, K.J., Sturtevan, J.M., Tinoco, I., Jr. (1975) J. Mol. Biol. 99, 549-565.
9. Breslauer, K.J., Franck, R., B16cker, H., Marky, L.A. (1986)Proc. Natl. Acad. Sci. U.S.A. 83, 3746-3750.
10. Cantor, C.R., Warshaw, M.M. (1970) Biopolymers 9, 1059-1077.
11. Craig, M.E., Crothers, D.M., Doty, P. (1971) J. Mol. Biol. 62, 383-401.
12. De los Santos, C., Rosen, M., Patel, D. (1989) Biochemistry 28, 7282-7289.
13. Felsenfeld, G., Davies, D.R., Rich, A. (1957) J. Am. Chem. Soc. 79, 2023.
14. Grigoriev, M., Praseuth, D., Robin, P., Hemar, A., Saison-Behmoaras, T., Dautry-Varsat, A., Thuong, N.T., HfilSne, C., Harel-Bellan, A. (1992) J. Biol. Chem. 267, 3389-3395.
15. Le Doan, T., Perrouault, L., Praseuth, D., Habhoub, N., Decout, J.-L., Thuong, N.T. Lhomme, J., Heléne, C. (1987) Nucleic Acids Res. 15, 7749-7760.
16. Li, Y., Zon, G., Wilson, W.D. (1991) Biochemistry 30, 7566-7572.
17. Longfellow, C.E., Kierzek, R., Turner, D.H. (1990) Biochemistry 29, 278-285.
18. Lyamichev, V.L., Mirkin, S.M., Frank-Kamenetskii, M.D., Cantor, C.R. (1988) Nucleic Acids Res. 16, 2165-2178.
19. Maher, L.J., Dervan, P.B., Wold, B.J. (1990) Biochemistry 29, 8820-8826.
20. Manzini, G., Xodo, L.E., Gasparotto, D., Quadrifoglio, F., van der Marel, G.A., van Boom, J.H. (1990) J. Mol. Biol. 213, 833-843.
21. Marck, C., Thiele, D. (1978) Nucleic Acids Res. 5, 1017-1028.
22. Margenau, H., Murphy, G.M.D. (1956) The Mathematics of Physics and Chemistry, Van Nostrand Cie, New York.
23. Marky, L.A., Breslauer, K.J. (1987) Biopolymers 26, 1601-1620.
24. Mergny, J.L., Sun, J.S., Rougfie, M., Montenay-Garestier, T., Barcelo, F., Chomilier, J., H616ne, C. (1991) Biochemistry 30, 9791-9798.
25. Morgan, A.R., Wells, R.D. (1968) J. Mol. Biol. 37, 63-80.
26. Moser, H.E., Dervan, P.B. (1987) Science 238, 645-650.
27. Petersheim, M., Turner, D. (1983) Biochemistry 22, 269-277.
28. Pilch, D.S., Brousseau, R., Shafer, R.H. (1990 a) Nucleic Acids Res. 18, 5743-5750.
29. Pilch, D.S., Levenson, C., Shafer, R.H. (1990 b) Proc. Natl. Acad. Sci. U.S.A. 87, 1942-1946.
30. Plum, G.E., Park, Y.W., Singleton, S.F., Dervan, P.B., Breslauer, K.J. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 9436-9440.
31. Pórschke, D., Eigen, M. (1971) J. Mol. Biol. 30, 291-308.
32. Postel, E.H., Flint, S.J., Kessler, D.J., Hogan, M.E. (1991)Proc. Natl. Acad. Sci. U.S.A. 88, 8227-8231.
33. Rajagopal, P., Feigon, J. (1989) Biochemistry 28, 7859-7870.
34. Vesnaver, G., Breslauer, K.J. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 3569-3573.
35. Xodo, L.E., Manzini, G., Quadrifoglio, F. (1990) Nucleic Acids Res. 18, 3557-3564.
36. Zimm, B.H. (1960) J. Chem. Phys. 33, 1349.