Statistical analyses of counts and distributions of restriction sites in DNA sequences

Nucleic Acids Research

Volumn 20, Issue 6, 1992, Pages 1363-1370

  Karlin, Samuel ^a   Burge, Chris ^a   Campbell, Allan M ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PALINDROMIC DNA; RESTRICTION ENDONUCLEASE;

ARTICLE; BACILLUS SUBTILIS; BACTERIOPHAGE; BACTERIOPHAGE T4; DNA METHYLATION; DNA MODIFICATION; DNA RECOMBINATION; DNA SEQUENCE; ESCHERICHIA COLI; EUKARYOTE; GENETIC TRANSCRIPTION; HUMAN; NONHUMAN; PRIORITY JOURNAL; RESTRICTION SITE; STATISTICAL ANALYSIS;

ANIMAL; BACTERIA; BASE SEQUENCE; DNA RESTRICTION ENZYMES; DNA, BACTERIAL; HUMAN; MOLECULAR SEQUENCE DATA; REPETITIVE SEQUENCES, NUCLEIC ACID; STATISTICS; SUPPORT, U.S. GOV'T, NON-P.H.S.; SUPPORT, U.S. GOV'T, P.H.S.; VIRUSES;

BACTERIA (MICROORGANISMS); EUKARYOTA; UNIDENTIFIED BACTERIOPHAGE;

EID: 0026600016     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/20.6.1363     Document Type: Article

References (33)

1. Kohara, Y., Akiyama, K. and Isoro, K. (1987) Cell 50, 495-508.
2. Churchill, G.A., Daniels, D.L. and Waterman, M.S. (1990) Nucleic Acids Res., 18, 589-597.
3. Karlin, S. and Macken, C. (1991) Nucleic Acids Res., 19, 4241-4246.
4. Patel, Y., Van Cott, E., Wilson, G.G. and McClelland, M. (1990) Nucleic Acids Res., 18, 1603-1607.
5. Rudd, K.E., Miller, W., Werner, C., Ostell, J., Tolstoshev, C. and Satterfield, S.G. (1991) Nucleic Acids Res., 19, 637-647.
6. Blaisdell, B.E. (1985) J. Mol. Evol., 21, 278-288.
7. Phillips, G.J., Arnold, J. and Ivarie, R. (1987) Nucleic Acids Res., 15, 2611-2626.
8. Stückle, E.E., Emmrich, C., Grab, U. and Nielson, P.J. (1990) Nucleic Acids Res., 18, 6641-6647.
9. Karlin, S. and Taylor, H. (1981) A Second Course in Stochastic Processes, Chap. 13. Academic Press, New York.
10. Shatp, P.M. (1986) Mol. Biol. Evol., 3, 75-83.
11. McClelland, M., Jones, R., Patel, Y. and Neilson, M. (1987) Nucleic Acids Res., 15, 5985-6008.
12. Karlin, S. (1986) In Karlin, S. and Nevo, E. (eds) Evolutionary Processes and Theory., Academic Press, FL, 329-363.
13. Wong, K. and McClelland, M. (1992) J. of Bacterial, in press.
14. Mizuuchi, K., Kemper, B., Hays, J. and Weisberg, R. (1982) Cell 29, 357-365.
15. Leach, D.R.F. and Stahl, F. (1983) Nature 305, 448-451.
16. Wyman, A.R., Wolfe, L.B. and Botstein, D. (1985) Proc. Nall. Acad. Sci. USA, 82, 2880-2884.
17. Chalker, A.F., Leach, D.R.F. and Lloyd, R.G. (1988) Gene 71, 201-205.
18. Roberts, R. (1991) Restriction Enzyme Data Base. Nucleic Acids Res., April 1981.
19. Gunthert, U. and Trautner, T.A. (1984) In Trautner, T.A. (ed.), Current Topics in Microbiology and Immunology., Springer, Berlin, 108x, 11-22.
20. Levin, B.R. (1986) In Karlin, S. and Nevo, E. (eds), Evolutionary Processes and Theory., Academic Press, New York, pp. 669-689.
21. Kornberg, A. (1980) DNA Replication., W.H.Freeman.
22. Levin, J.R. and Chamberlin, MJ. (1987) J. Mol. Biol., 196, 61-84.
23. Landick, R. and Yanofsky, C. (1984) J. Biol. Chem., 259, 11550-11557.
24. Arndt, K. and Chamberlin, M. (1990) J. Mol. Evol., 213, 79-108.
25. Andersson, S.G.R. and Kurland, C.G. (1990) Microbiol. Rev., 198-210.
26. Randall, L.L., Josefsson, L.G. and Hardy, SJ.S. (1980) Eur. J. Biochem., 107, 375-379.
27. Karlin, S., Morris, M., Ghandour, G. and Leung, M.-Y. (1988) CABIOS 4, 41-51.
28. Otwinowski, Z., Schevitz, R.W., Zhang, R.G., Lawson, C.L., Joachimiak, A., Marrnorstein, R.Q., Luisi, B.F. and Sigler, P.B. (1988) Nature 335, 321-326.
29. Hennecke, F., Kolmar, H., Brundl, K. and Fritz, H.-J. (1991) Nature 353, 776-778.
30. Burge, C., Campbell, A. and Karlin, S. (1992) Proc. Natl. Acad. Sci. USA, in press.
31. McClelland, M. and Bhagwat, A.S. (1992) Nature scientific correspondence, in press.
32. McClelland, M. (1985) J. Mol. Evol., 21, 317-322.
33. Nelson, M. and McClelland, M. (1991) Nucleic Acids Res., 19, 2045-2071.