메뉴 건너뛰기




Volumn 227, Issue 4, 1992, Pages 1224-1243

Conformational and thermodynamic properties of supercoiled DNA

Author keywords

DNA supercoiling; loop formation in DNA; tertiary structure of DNA: Monte Carlo simulation; thermodynamics of supercoiling

Indexed keywords

ARTICLE; BINDING SITE; DNA BINDING; DNA CONFORMATION; DNA HELIX; DNA STRUCTURE; DNA SUPERCOILING; ELECTRON MICROSCOPY; ENTROPY; GEOMETRY; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; THERMODYNAMICS;

EID: 0026489194     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/0022-2836(92)90533-P     Document Type: Article
Times cited : (276)

References (65)
  • 3
    • 0014944441 scopus 로고
    • The interaction of closed-circular DNA with intercalative dyes. II. The free energy of superhelix formation in SV40 DNA
    • (1970) J. Mol. Biol , vol.47 , pp. 419-435
    • Bauer1    Vinograd2
  • 6
    • 0023117639 scopus 로고
    • Use of site-specific recombination as a probe of DNA structure and metabolism in vivo
    • (1987) J. Mol. Biol , vol.194 , pp. 205-218
    • Bliska1    Cozzarelli2
  • 8
    • 0020598457 scopus 로고
    • Representation of short and long-range handedness in protein structures by signed distance maps
    • (1983) J. Mol. Biol , vol.163 , pp. 613-621
    • Braun1
  • 9
    • 0019578292 scopus 로고
    • Thermodynamics and equilibrium sedimentation analysis of the close approach of DNA molecules and a molecular ordering transition
    • (1981) Biopolymers , vol.20 , pp. 1305-1328
    • Brian1    Frisch2    Lerman3
  • 11
    • 0022447082 scopus 로고
    • Role of DNA topology in mu transposition: mechanism of sensing the relative orientation of two DNA segments
    • (1986) Cell , vol.45 , pp. 793-800
    • Craigie1    Mizuuchi2
  • 16
    • 0022501136 scopus 로고
    • Multiple DNA-protein interactions governing high-precision DNA transactions
    • (1986) Science , vol.233 , pp. 1050-1056
    • Echols1
  • 17
    • 0025372285 scopus 로고
    • Lac repressor forms stable loops in vitro with supercoiled wild-type lac DNA containing all three natural lac operators
    • (1990) J. Mol. Biol , vol.213 , pp. 763-775
    • Eismann1    Muller-Hill2
  • 22
    • 0025736763 scopus 로고
    • Synthetic DNA bending sequences increase the rate of in vitro transcription initiation at the Escherichia coli lac promoter
    • (1991) J. Mol. Biol , vol.219 , pp. 217-230
    • Gartenberg1    Crothers2
  • 24
    • 0024715903 scopus 로고
    • Global equilibrium configurations of supercoiled DNA
    • (1989) Macromolecules , vol.22 , pp. 3292-3303
    • Hao1    Olson2
  • 25
    • 0002549697 scopus 로고
    • Resolvases and DNA-invertases: a family of enzymes active in site-specific recombination
    • R. Kucherlapati, G.R. Smith, American Society for Microbiology, Washington, D.C
    • (1988) Genetic Recombination , pp. 357-396
    • Hatfull1    Grindley2
  • 27
    • 0021320555 scopus 로고
    • The torsional rigidity of DNA and the length dependence of the free energy of DNA supercoiling
    • (1984) J. Mol. Biol , vol.173 , pp. 75-91
    • Horowitz1    Wang2
  • 28
    • 0021320555 scopus 로고
    • The torsional rigidity of DNA and the length dependence of the free energy of DNA supercoiling
    • (1984) J. Mol. Biol , vol.173 , pp. 75-91
    • Horowitz1    Wang2
  • 29
  • 30
    • 0024345712 scopus 로고
    • Gin-mediated recombination of catenated and knotted DNA substrates: implications for the mechanism of interaction between cis-acting sites
    • (1989) Cell , vol.58 , pp. 147-159
    • Kanaar1    van de Putte2    Cozzarelli3
  • 35
    • 0024297575 scopus 로고
    • Curved helix segments can uniquely orient the topology of supertwisted DNA
    • (1988) Cell , vol.52 , pp. 545-549
    • Laundon1    Griffith2
  • 36
    • 0018989998 scopus 로고
    • Monte Carlo computation of supercoiling energy, the sedimentation constant, and the radius of gyration of unknotted and circular DNA
    • (1980) Biopolymers , vol.19 , pp. 619-637
    • Le Bret1
  • 37
    • 0023042215 scopus 로고
    • Ring closure probabilities for DNA fragments by Monte Carlo simulation
    • (1986) J. Mol. Biol , vol.189 , pp. 61-72
    • Levene1    Crothers2
  • 38
    • 0023042216 scopus 로고
    • Topological distributions and the torsional rigidity of DNA: a Monte Carlo study of DNA circles
    • (1986) J. Mol. Biol , vol.189 , pp. 73-83
    • Levene1    Crothers2
  • 39
    • 0025202249 scopus 로고
    • DNA looping and unlooping by ArcC protein
    • (1990) Science , vol.250 , pp. 528-532
    • Lobell1    Schleif2
  • 43
    • 0024322147 scopus 로고
    • Efficient Mu transposition requires interaction of transposase with a DNA sequence at the Mu operator: implications for regulation
    • (1989) Cell , vol.58 , pp. 399-408
    • Mizuuchi1    Mizuuchi2
  • 44
    • 0025817867 scopus 로고
    • Dynamics of long-range interactions on DNA: the speed of synapsis during site-specific recombination by resolvase
    • (1991) Cell , vol.66 , pp. 781-791
    • Parker1    Halford2
  • 45
    • 0022446209 scopus 로고
    • Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter
    • (1986) Cell , vol.45 , pp. 785-792
    • Reitzer1    Magasanik2
  • 51
    • 0021022977 scopus 로고
    • Energetics of DNA twisting. I. Relation between twist and cyclization probability
    • (1983) J. Mol. Biol , vol.170 , pp. 957-981
    • Shore1    Baldwin2
  • 53
    • 0017389770 scopus 로고
    • Interactions of highly charged colloidal cylinders with applications to double-stranded DNA
    • (1977) Biopolymers , vol.16 , pp. 1435-1448
    • Stigter1
  • 54
    • 33845379306 scopus 로고
    • Ionic charge effects on the sedimentation rate and intrinsic viscosity of polyelectrolytes
    • (1985) Macromolecules , vol.18 , pp. 1619-1627
    • Stigter1
  • 55
  • 56
    • 0025355712 scopus 로고
    • Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. II. NaCl-dependence of DNA flexibility and helical repeat
    • (1990) J. Mol. Biol , vol.212 , pp. 363-376
    • Taylor1    Hagerman2
  • 59
    • 0022137507 scopus 로고
    • Assembly and propagation of repressed and derepressed chromosomal states
    • (1985) Cell , vol.42 , pp. 705-711
    • Weintraub1
  • 62
    • 0026431781 scopus 로고
    • Appendix. A formula for the average number of knot interlinks caused by type 2 topoisomerase action
    • (1991) J. Biol. Chem , vol.266 , pp. 20574-20575
    • White1
  • 65
    • 0025647116 scopus 로고
    • Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers
    • (1990) EMBO J , vol.9 , pp. 4555-4562
    • Zechiedrich1    Osheroff2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.