Regulation of bacterial oxidative stress genes

Annual Review of Genetics

Volumn 25, Issue , 1991, Pages 315-337

  Demple, Bruce ^a  

^a HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

Escherichia coli; Global responses; Positive control; Reactive oxygen; Starvation

Indexed keywords

OXYGEN RADICAL;

AEROBIC METABOLISM; BACTERIUM; EVOLUTION; NONHUMAN; OXIDATION; PRIORITY JOURNAL; REVIEW; STRESS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0026335852     PISSN: 00664197     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.ge.25.120191.001531     Document Type: Review

References (110)

1. Abate, C., Patel, L., Rauscher, F. J. III, Curran, T. 1990. Redox regulation of Fos and Jun DNA-binding activity in vitro. Science 249:1157-61
2. Adamowicz, M., Kelley, P. M., Nickerson, K. W. 1991. Detergent (Sodium Dodecyl Sulfate) shock proteins in Escherichia coli. J. Bacteriol. 173:229-33
3. Albright, L. M., Huala, E., Ausubel, F. M. 1989. Prokaryotic signal transduction mediated by sensor and regulator protein pairs. Annu. Rev. Genet. 23:311-36
4. Aldea, M., Garrido, T., Hernandez-Chico, C., Vicente, M., Kushner, S. R. 1989. Induction of a growth-phase-dependent promoter triggers transcription of bolA, an Escherichia coli morphogene. EMBO J. 8:3923-31
5. Amabile-Cuevas, C. F., Demple, B. 1991. Molecular characterization of the soxRS genes of Escherichia coli: Two regulators control a superoxide stress regulon. Nucleic Acids Res. In press
6. Ames, B. N. 1983. Dietary carcinogens and anticarcinogens. Science 221:1256-63
7. Andersen, J., Delihas, N. 1990. micF RNA binds to the 5′ end of ompF mRNA and to a protein from Escherichia coli. Biochemistry 29:9249-56
8. Babior, B. M. 1987. The respiratory burst oxidase. Trends Biochem. Sci. 12:241-43
9. Beutler, E., Yoshida, A. 1988. Genetic variation of glucose-6-phosphate dehydrogenase: a catalog and future prospects. Medicine 67:311-34
10. Bloch, C. A., Ausubel, F. M. 1986. Paraquat-mediated selection for mutations in the manganese-superoxide dismutase gene sodA. J. Bacteriol. 168:795-98
11. Bol, D. K., Yasbin, R. E. 1990. Characterization of an inducible oxidative stress system in Bacillus subtilis. J. Bacteriol. 172:3503-6
12. Bölker, M., Kahmann, R. 1989. The Escherichia coli regulatory protein oxyR discriminates between methylated and unmethylated states of the phage Mu mom promoter. EMBO J. 8:2403-10
13. Boothman, D. A., Lee, S., Trask, D. K., Dou, Q-P., Hughes, E. N. 1990. X-ray inducible proteins and genes in human cells. In Ionizing Radiation Damage to DNA: Molecular Aspects, ed. S. S. Wallace, R. B. Painter, pp. 309-17. New York: Liss. 331 pp.
14. Bowen, S. W., Hassan, H. M. 1988. Induction of the manganese-containing superoxide dismutase in Escherichia coli is independent of the oxidative stress (oxyR-controlled) regulon. J. Biol. Chem. 263:14808-11
15. Braus, G., Argast, M., Beck, C. F. 1984. Identification of additional genes in transposon Tn10: tetC and tetD. J. Bacteriol. 160:504-9
16. Brot, N., Weissbach, H. 1982. The biochemistry of methionine sulfoxide residues in proteins. Trends Biochem. Sci. 7:137-39
17. Buettner, M. J., Spitz, E., Rickenberg, H. V. 1973. Cyclic 3′,5′-monophosphate in Escherichia coli. J. Bacteriol. 114:1068-73
18. Carlioz, A., Touati, D. 1986. Isolation of superoxide dismutase mutants in Escherichia coli: Is superoxide dismutase strictly necessary for aerobic life? EMBO J. 5:623-30
19. Chan, E., Weiss, B. 1987. Endonuclease IV of Escherichia coli is induced by paraquat. Proc. Natl. Acad. Sci. USA 84:3189-93
20. Christman, M. F., Morgan, R. W., Jacobson, F. S., Ames, B. N. 1985. Positive control of a regulon for defenses against oxidative stress and some heat-shock proteins in Salmonella typhimurium. Cell 41:753-62
21. Christman, M. F., Storz, G., Ames, B. N. 1989. OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteins. Proc. Natl. Acad. Sci. USA 86:3484-88
22. Cohen, S. P., McMurray, L. M., Levy, S. B. 1988. mar A locus causes decreased expression of ompF porin in multiple-antibiotic-resistant (mar) mutants of Escherichia coli. J. Bacteriol. 170:5416-22
23. Cunningham, R. P., Saporito, S. M., Spitzer, S. G., Weiss, B. 1986. Endonuclease IV (nfo) mutant of Escherichia coli. J. Bacteriol. 168:1120-27
24. Davies, K. J. A., Lin, S. W. 1988. Degradation of oxidatively denatured proteins in Escherichia coli. Free Radic. Biol. Med. 5:215-32
25. Demple, B., Halbrook, J. 1983. Inducible repair of oxidative DNA damage in Escherichia coli. Nature 304:466-68
26. Demple, B., Levin, J. D. 1991. Repair systems for radical-damaged DNA.In Oxidative Stress, Vol. 2, ed. H. Sies. London: Academic. In press
27. Demple, B., Halbrook, J., Linn, S. 1983. Escherichia coli xth mutants are hypersensitive to hydrogen peroxide. J. Bacteriol. 153:1079-82
28. Farr, S. B., D'Ari, R., Touati, D. 1986. Oxygen-dependent mutagenesis in Escherichia coli lacking superoxide dismutase. Proc. Natl. Acad. Sci. USA 83: 8268-72
29. Farr, S. B., Natvig, D. O., Kogoma, T. 1985. Toxicity and mutagenicity of plumbagin and the induction of a possible new DNA repair pathway in Escherichia coli. J. Bacteriol. 164:1309-16
30. Farr, S. B., Touati, D., Kogoma, T. 1988. Effects of oxygen stress on membrane functions in Escherichia coli: Role of HPI catalase. J. Bacteriol. 170:1837-42
31. Fridovich, I. 1978. The biology of oxygen radicals. Science 201:875-80
32. Fridovich, I. 1983. Superoxide radical: An endogenous toxicant. Annu. Rev. Pharmacol. Toxicol. 23:239-57
33. Genilloud, O., Moreno, F., Kolter, R. 1989. DNA sequence, products and transcriptional pattern of the genes involved in production of the DNA replication inhibitor microcin B17. J. Bacteriol. 171:1126-35
34. George, A. M., Levy, S. B. 1983. Amplifiable resistance to tetracycline, chloramphenicol, and other antibiotics in Escherichia coli: Involvement of a non-plasmid-determined efflux of tetracyline. J. Bacteriol. 155:531-40
35. 2 and gamma radiation. J. Bacteriol. 168: 1026-29
36. - mutants. EMBO J. 7:2611-17
37. Greenberg, J. T., Demple, B. 1989. A global response induced in Escherichia coli by redox-cycling agents overlaps with that induced by peroxide stress. J. Bacteriol. 171:3933-39
38. Greenberg, J. T., Chou, J. H., Monach, P. A., Demple, B. 1991. Activation of oxidative stress genes by mutations at the soxQ-cfxB-marA locus of Escherichia coli. J. Bacteriol. 173:4433-39
39. Greenberg, J. T., Monach, P. A., Chou, J. H., Josephy, P. D., Demple, B. 1990. Positive control of a global antioxidant defense regulon activated by superoxide-generating agents in Escherichia coli. Proc. Natl. Acad. Sci. USA 87:6181-85
40. Groat, R. G., Schultz, J. E., Zychlinsky, E., Bockman, A., Matin, A. 1986. Starvation proteins in Escherichia coli: Kinetics of synthesis and role in starvation survival. J. Bacteriol. 168:486-93
41. Hassan, H. M., Fridovich, I. 1977. Regulation of the synthesis of superoxide dismutase in Escherichia coli. J. Biol. Chem. 252:7667-72
42. Helmann, J. D., Ballard, B. T., Walsh, C. T. 1990. The merR metalloregulatory protein binds mercuric ion as a incoordinate, metal-bridged dimer. Science 247:946-48
43. Henikoff, S., Haughn, G. W., Calou, J. M., Wallace, J. C. 1988. A large family of bacterial activator proteins. Proc. Natl. Acad. Sci. USA 85:6602-6
44. Hitz, H., Schafer, D., Wittmann-Liebold, B. 1975. Primary structure of ribosomal protein S6 from the wild type and mutant of Escherichia coli. FEBS Lett. 56:259-62
45. Hooper, D. C., Wolfson, J. S., Souza, K. S., Ng, E. Y., McHugh, G. L., Swartz, M. N. 1989. Mechanisms of quinolone resistance in Escherichia coli: Characterization of nfxB and cfxB, two mutant resistance loci decreasing norfloxacin accumulation. Antimicrob. Agents Chemother. 33:283-90
46. Imlay, J. A., Linn, S. 1986. Bimodal pattern of killing of DNA-repair-defective or anoxically grown Escherichia coli by hydrogen peroxide. J. Bacteriol. 166:519-27
47. Imlay, J. A., Linn, S. 1988. DNA damage and oxygen radical toxicity. Science 240:1302-9
48. Javor, G. T. 1989. Thiol-sensitive genes of Escherichia coli. J. Bacteriol. 171: 5607-13
49. Jenkins, D. E., Auger, E. A., Matin, A. 1991. Role of RpoH, a heat shock regulator protein, in Escherichia coli carbon starvation protein synthesis survival. J. Bacteriol. 173:1992-96
50. 2 challenge in Escherichia coli. J. Bacteriol. 170: 3910-14
51. Johnson, K., Charles, I., Dougan, G., Pickard, D., O'Gaora, P., Costa, G., et al. 1991. The role of a stress-response protein in Salmonella typhyimurium virulence. Mol. Microbiol. 5:401-7
52. Jones, P. G., vanBogelen, R. A., Neidhardt, F. C. 1987. Induction of proteins in response to low temperature in Escherichia coli. J. Bacteriol. 169: 2092-95
53. Kao, S. M., Hassan, H. M. 1985. Biochemical characterization of a Paraquat-tolerant mutant of Escherichia coli. J. Biol. Chem. 260:10478-81
54. Kappus, H., Sies, H. 1981. Toxic drug effects associated with oxygen metabolism: Redox cycling and lipid peroxidation. Experientia 37:1233-58
55. Kapoor, M., Sreenivasan, G. M., Goel, N., Lewis, J. 1990. Development of thermotolerance in Neurospora crassa by heat shock and other stresses eliciting peroxidase induction. J. Bacteriol. 172: 2798-801
56. Keyse, S. M., Applegate, L. A., Tromyoukis, Y., Tyrrell, R. M. 1990. Oxidant stress leads to transcriptional activation of the human heme oxygenase gene in cultured skin fibroblasts. Mol. Cell. Biol. 10:4967-69
57. Kiley, P. J., Reznikoff, W. S. 1991. Fnr mutants that activate gene expression in the presence of oxygen. J. Bacteriol. 173:16-22
58. Kogoma, T., Farr, S. B., Joyce, K. M., Natvig, D. O. 1988. Isolation of gene fusions (soi::lacZ) inducible by oxidative stress in Escherichia coli. Proc. Natl. Acad. Sci. USA 85:4799-803
59. Kuo, C. F., Mashino, T., Fridovich, I. 1987. α, β-Dihydroxyisovalerate dehydratase: A superoxide-sensitive enzyme. J. Biol. Chem. 262:4724-27
60. Lambert, M., Borek, C. 1988. X-ray induced changes in gene expression in normal and oncogene-transformed rat cell lines. J. Natl. Cancer Inst. 80:1492-97
61. Lange, R., Hengge-Aronis, R. 1991. Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol. Microbiol. 5:49-59
62. Levin, J. D., Johnson, A. W., Demple, B. 1988. Homogeneous Escherichia coli endonuclease IV: Characterization of an enzyme that recognizes free-radical-induced damage in DNA. J. Biol. Chem. 263:8066-71
63. Lindahl, T., Sedgwick, B., Sekiguchi, M., Nakabeppu, Y. 1988. Regulation and expression of the adaptive response to alkylating agents. Annu. Rev. Biochem. 57:133-57
64. Loewen, P. C., Triggs, B. L. 1984. Genetic mapping of katF, a locus that with katE affects the synthesis of a second catalase species in Escherichia coli. J. Bacteriol. 160:668-75
65. Loewen, P. C., Switala, J., Triggs-Raine, B. L. 1985. Catalases HPI and HPII in Escherichia coli are induced independently. 1985. Arch. Biochem. Biophys. 243:144-49
66. Loewen, P. C., Switala, J., Mulvey, M. R., Thorvaldson, T. 1991. Expression of katF, encoding a putative σ factor, is mediated by the proton motive force. J. Bacteriol. Submitted
67. Loewen, P. C., Triggs, B. L., George, C. S., Hrabarchuk, B. 1985. Genetic mapping of katG, a locus that affects synthesis of the bifunctional catalase-peroxidase hydroperoxidase I in Escherichia coli. J. Bacteriol. 162:661-67
68. Magasanik, B. 1989. Gene regulation from sites near and far. New Biol. 1:247-51
69. McCann, M. P., Kidwell, J. P., Matin, A. 1991. The putative σ factor katF has a central role in the development of starvation-mediated general resistance in Escherichia coli. J. Bacteriol. 173:4188-94
70. McCormick, J. P., Fischer, J. R., Pachlatko, J. P., Eisenstark, A. 1976. Characterization of a cell-lethal product from the photooxidation of tryptophan: Hydrogen peroxide. Science 191:468-69
71. Mizuno, T., Chou, M-Y., Inouye, M. 1984. A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (m/cRNA). Proc. Natl. Acad. Sci. USA 81:1966-70
72. Mulvey, M. R., Loewen, P. C. 1989. Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel σ transcription factor. Nucleic Acids Res. 17:9979-91
73. Mulvey, M. R., Switala, J., Borys, A., Loewen, P. C. 1990. Regulation of transcription of katE and katF in Escherichia coli. J. Bacteriol. 172:6713-20
74. Munkres, K. D. 1990. Genetical, developmental and thermal regulation of antioxidant enzymes in Neurospora. Free Radic. Biol. Med. 9:23-28
75. Nebert, D. W., Petersen, D. D., Fornace, A. J. Jr. 1990. Cellular responses to oxidatiye stress: The gene battery as a paradigm. Environ. Health Perspect. 88:13-25
76. Neidhardt, F. C., vanBogelen, R. A. 1987. Heat shock response. In Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology, ed. F. C. Neidhardt, J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechter, H. E. Umbarger, 2:1334-45. Washington, DC :Am. Soc. Microbiol. 1654 pp.
77. Niederhoffer, E. C., Naranjo, C. M., Bradley, K. L., Fee, J. A. 1990. Control of Escherichia coli superoxide dismutase (sodA and sodB) genes by the ferric uptake regulation (fur) locus. J. Bacteriol. 172:1930-38
78. Nikaido, H., Vaara, M. 1987. Outer membrane. See Ref. 76, pp. 7-22
79. O'Halloran, T. V., Frantz, B., Shin, M. K., Ralston, D. M., Wright, J. G. 1989. The merR heavy metal receptor mediates positive activation in a topologically novel transcription complex. Cell 56: 119-29
80. Okita, T. W., Rodriguez, R. L., Preiss, J. 1981. Biosynthesis of bacterial glycogen: Cloning of the glycogen biosynthetic enzyme structural genes of Escherichia coli. J. Biol. Chem. 256:6944-52
81. Richter, H. E., Loewen, P. C. 1981. Induction of catalase in Escherichia coli by ascorbic acid involves hydrogen peroxide. Biochem. Biophys. Res. Commun. 100:1039-46
82. Ross, W., Park, S-J., Summers, A. O. 1989. Genetic analysis of transcriptional activation and repression in the Tn21 mer operon. J. Bacteriol. 171:4009-18
83. Sak, B. D., Eisenstark, A., Touati, D. 1989. Exonuclease III and the catalase-hydroperoxidase II in Escherichia coli are both regulated by the katF gene product. Proc. Natl. Acad. Sci. USA 86:3271-75
84. Sammartano, L. J., Tuveson, R. W. 1983. Escherichia coli xthA mutants are sensitive to inactivation by broad-spectrum near-UV (300- to 400-nm) radiation. J. Bacteriol. 156:904-6
85. Sammartano, L. J., Tuveson, R. W. 1985. Hydrogen peroxide induced resistance to broad-spectrum near-ultraviolet light (300-400 nm) inactivation in Escherichia coli. Photochem. Photobiol. 41:367-70
86. 2 and broad-spectrum near-UV radiation by the Escherichia coli katF locus. J. Bacteriol. 168:13-21
87. Sancar, A., Wharton, R. P., Seltzer, S., Kacinski, B. M., Clarke, N. D., Rupp, W. D. 1981. Indentification of the uvrA gene product. J. Mol. Biol. 148:45-62
88. Schultz, J. E., Latter, G. I., Matin, A. 1988. Differential regulation by cyclic AMP of starvation protein synthesis in Escherichia coli. J. Bacteriol. 170: 3903-9
89. Slonczewski, J. L., Gonzalez, T. N., Bartholomew, F. M., Holt, N. J. 1987. Mud-directed lacZ fusions regulated by low pH in Escherichia coli. J. Bacteriol. 169:3001-6
90. Spector, M. P., Aliabadi, Z., Gonzalez, T., Foster, J. W. 1986. Global control in Salmonella typhimurium: Two-dimensional electrophoretic analysis of starvation-, anaerobiosis- and heat shock-inducible proteins. J. Bacteriol. 168:420-24
91. Stock, J. B., Ninfa, A. J., Stock, A. M. 1989. Protein phosphorylation and regulation of adaptive responses in bacteria. Microbiol. Rev. 53:450-90
92. Storz, G., Christman, M. F., Sies, H., Ames, B. N. 1987. Spontaneous mutagenesis and oxidative damage to DNA in Salmonella typhimurium. Proc. Natl. Acad. Sci. USA 84:8917-21
93. Storz, G., Jacobson, F. S., Tartaglia, L. A., Morgan, R. W., Silveira, L. A., et al. 1989. An alkyl hydroperoxide reductase induced by oxidative stress in Salmonella typhimurium and Escherichia coli: Genetic characterization and cloning of ahp. J. Bacteriol. 171:2049-55
94. Storz, G., Tartaglia, L. A., Ames, B. N. 1990. Transcriptional regulator of oxidative stress-inducible genes: Direct activation by oxidation. Science 248:189-94
95. Storz, G., Tartaglia, L. A., Farr, S. B., Ames, B. N. 1990. Bacterial defenses against oxidative stress. Trends Genet. 6:363-68
96. Tao, K., Makino, K., Yonei, S., Nakata, A., Shinagawa, H. 1989. Molecular cloning and nucleotide sequencing of oxyR, the positive regulatory gene of a regulon for an adaptive response to oxidative stress in Escherichia coli: Homologies between OxyR protein and a family of bacterial activator proteins. Mol. Gen. Genet. 218:371-76
97. Tao, K., Makino, K., Yonei, S., Nakata, A., Shinagawa, H. 1991. Purification and characterization of the Escherichia coli OxyR protein, the positive regulator for hydrogen peroxide-inducible regulon. J. Biochem. 109:262-66
98. Tardat, B., Touati, D. 1991. Two global regulators repress the anaerobic expression of MnSOD in Escherichia coli: Fur (ferric uptake regulation) and Arc (aerobic respiration control). Mol. Microbiol. 5:455-65
99. Tartaglia, L. A., Storz, G., Ames, B. N. 1989. Identification and molecular analysis of oxyR-regulated promoters important for the bacterial adaptation to oxidative stress. J. Mol. Biol. 210:709-19
100. Touati, D. 1988. Transcriptional and posttranscriptional regulation of manganese superoxide dismutase biosynthesis in Escherichia coli, studied with operon and protein fusions. J. Bacteriol. 170:2511-20
101. Touati, E., Dassa, E., Boquet, P. L. 1986. Pleiotropic mutations in appR reduce pH 2.5 acid phosphatase expression and restore succinate utilization in crp-deficient strains of Escherichia coli. Mol. Gen. Genet. 202:257-64
102. Triggs-Raine, B. L., Doble, B. W., Mulvey, M. R., Sorby, P. A., Loewen, P. C. 1988. Nucleotide sequence of katG, encoding catalase HPI of Escherichia coli. J. Bacteriol. 170:4415-19
103. Tsaneva, I. R., Weiss, B. 1990. soxR, a locus governing a superoxide response regulon in Escherichia coli K-12. J. Bacteriol. 172:4197-205
104. vanBogelen, R. A., Kelley, P. M., Neidhardt, F. C. 1987. Differential induction of heat shock, SOS, and oxidation stress regulons and accumulation of nucleotides in Escherichia coli. J. Bacteriol. 169:26-32
105. von Ossowski, I., Mulvey, M. R., Leco, P. A., Borys, A., Loewen, P. C. 1991. Nucleotide sequence of Escherichia coli katE, which encodes catalase HPII. J. Bacteriol. 173:514-20
106. von Sonntag, C. 1987. The Chemical Basis of Radiation Biology. London/ New York/ Philadephia: Taylor & Francis. 515 pp.
107. Walker, G. C. 1987. The SOS response of Escherichia coli. See Ref. 76, pp. 1346-57
108. Walkup, L. K. B., Kogoma, T. 1989. Escherichia coli proteins inducible by oxidative stress mediated by the superoxide radical. J. Bacteriol. 171:1476-84
109. Wu, J., Weiss, B. 1991. Two divergently transcribed genes, soxR and soxS, control a superoxide response regulon of Escherichia coli. J. Bacteriol. 173:2864-71
110. 12. Can. J. Microbiol. 23:84-91