Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis δ virus RNA

Proceedings of the National Academy of Sciences of the United States of America

Volumn 88, Issue 13, 1991, Pages 5631-5634

  Elena, Santiago F ^a   Dopazo, Joaquín ^a   Flores, Ricardo ^b   Diener, Theodor O ^c,d   Moya, Andrés ^a  

^a UNIVERSITY OF VALENCIA   (Spain)

^b INSTITUTO DE AGROQUÍMICA Y TECNOLOGÍA DE ALIMENTOS CSIC   (Spain)

^c UNIVERSITY OF MARYLAND   (United States)

^d AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Living fossils; Quasispecies; RNA world; Statistical geometry

Indexed keywords

DELTA VIRUS; HEPATITIS DELTA VIRUS; VIROIDS;

SATELLITE RNA; VIRUS RNA;

ARTICLE; HEPATITIS VIRUS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; VIROID;

COMPARATIVE STUDY; HEPATITIS DELTA VIRUS; MODELS, BIOLOGICAL; PHYLOGENY; RNA; RNA, SATELLITE; RNA, VIRAL; SUPPORT, NON-U.S. GOV'T; VIROIDS;

EID: 0026079830     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.88.13.5631     Document Type: Article

References (50)

1. Diener, T. O. & Owens, R. A. (1989) in The Biochemistry of Plants. Molecular Biology, Vol. 15, ed. Marcus, A. (Academic, New York), pp. 537-562.
2. Francki, R. I. B. (1987) in The Viroids, ed. Diener, T. O. (Plenum, New York), pp. 205-218.
3. Taylor, J. (1990) Semin. Virol. 1, 135-141.
4. Branch, A. D., Levine, B. J. & Robertson, H. D. (1990) Semin. Virol. 1, 143-152.
5. Robertson, H. D. & Branch, A. D. (1987) in Viroids and Viroidlike Pathogens, ed. Semancik, J. S. (CRC, Boca Raton, FL), pp. 49-69.
6. Sänger, H. L. (1987) in The Viroids, ed. Diener, T. O. (Plenum, New York), pp. 117-166.
7. Kiefer, M. C., Owens, R. A. & Diener, T. O. (1983) Proc. Natl. Acad. Sci. USA 80, 6234-6238.
8. Diener, T. O. (1981) Proc. Natl. Acad. Sci. USA 78, 5014-5015.
9. Dinter-Gottlieb, G. (1986) Proc. Natl. Acad. Sci. USA 83, 6250-6254.
10. Zimmern, D. (1982) Trends Biochem. Sci. 7, 205-207.
11. Kruger, K., Grabowski, P. J., Zaug, A. J., Sands, J., Gottschling, D. E. & Cech, T. R. (1982) Cell 31, 147-157.
12. Guerrier-Takada, C., Gardiner, K., Marsh, T., Pace, N. & Altman, S. (1983) Cell 35, 849-857.
13. Sharp, P. A. (1985) Cell 42, 397-400.
14. Cech, T. R. (1986) Proc. Natl. Acad. Sci. USA 83, 4360-4363.
15. Prody, G. A., Bakos, J. T., Buzayan, J. M., Schneider, I. R. & Bruening, G. (1986) Science 231, 1577-1580.
16. Forster, A. C., Jeffries, A. C., Sheldon, C. C. & Symons, R. H. (1987) Cold Spring Harbor Symp. Quant. Biol. 52, 249-259.
17. Diener, T. O. (1989) Proc. Natl. Acad. Sci. USA 86, 9370-9374.
18. Symons, R. H. (1981) Nucleic Acids Res. 9, 6527-6537.
19. Gross, H. J., Domdey, H., Lossow, C., Jank, P., Raba, M., Alberty, H. & Sänger, H. L. (1978) Nature (London) 273, 203-208.
20. Gross, H. J., Krupp, G., Domdey, H., Raba, M., Jank, P., Lossow, C., Alberty, H., Ramm, K. & Sänger, H. L. (1982) Eur. J. Biochem. 121, 249-257.
21. Haseloff, J. & Symons, R. H. (1981) Nucleic Acids Res. 9, 2741-2752.
22. Hammond, R. W., Smith, D. R. & Diener, T. O. (1989) Nucleic Acids Res. 17, 10083-10094.
23. Haseloff, J., Mohamed, N. A. & Symons, R. H. (1982) Nature (London) 299, 316-321.
24. Ohno, T., Takamatsu, N., Meshi, T. & Okada, Y. (1983) Nucleic Acids Res. 11, 6185-6197.
25. Puchta, H., Ramm, K. & Sänger, H. L. (1988) Nucleic Acids Res. 16, 4197-4216.
26. Hashimoto, J. & Koganezawa, H. (1987) Nucleic Acids Res. 15, 7045-7052.
27. Koltunow, A. M. & Rezaian, M. A. (1988) Nucleic Acids Res. 16, 849-864.
28. Koltunow, A. M. & Rezaian, M. A. (1989) Virology 170, 575-578.
29. Rezaian, M. A. (1990) Nucleic Acids Res. 18, 1813-1818.
30. Keese, P., Osorio-Keese, M. E. & Symons, R. H. (1988) Virology 162, 508-510.
31. Haseloff, J. & Symons, R. H. (1982) Nucleic Acids Res. 10, 3681-3691.
32. Keese, P., Bruening, G. & Symons, R. H. (1983) FEBS Lett. 159, 185-190.
33. Davies, D., Haseloff, J. & Symons, R. H. (1990) Virology 177, 216-224.
34. Buzayan, J. M., Gerlach, W. L. & Bruening, G. (1986) Virology 151, 186-199.
35. Kaper, J. M., Tousignant, M. E. & Steger, G. (1988) Biochem. Biophys. Res. Commun. 154, 318-325.
36. Chen, P. J., Kalpana, G., Goldberg, J., Mason, W., Werner, B., Gerin, J. & Taylor, J. (1986) Proc. Natl. Acad. Sci. USA 83, 8774-8778.
37. Higgins, D. G. & Sharp, P. M. (1988) Gene 73, 237-244.
38. Higgins, D. G. & Sharp, P. M. (1989) Comput. Appl. Biosci. 5, 151-153.
39. Keese, P. & Symons, R. H. (1985) Proc. Natl. Acad. Sci. USA 82, 4582-4586.
40. Fitch, W. M. & Margoliash, E. (1967) Science 155, 279-284.
41. Felsenstein, J. (1985) Evolution 39, 783-791.
42. Efron, B. (1982) The Jackknife, the Bootstrap and Other Resampling Plans (Soc. Ind. Appl. Math., Philadelphia).
43. Kimura, M. (1983) The Neutral Theory of Molecular Evolution (Cambridge Univ. Press, Cambridge, U.K.).
44. Felsenstein, J. (1990) PHYLIP Manual (Univ. Herbarium, Univ. of California, Berkeley).
45. Eigen, M., Winkler-Oswatitsch, R. & Dress, A. (1988) Proc. Natl. Acad. Sci. USA 85, 5913-5917.
46. Winkler-Oswatitsch, R., Dress, A. & Eigen, M. (1986) Chem. Scr. 26B, 59-66.
47. Koltunow, A. M. & Rezaian, M. A. (1989) Intervirology 30, 194-201.
48. Huang, A. S. (1991) in RNA Genetics, eds. Domingo, E., Holland, J. J. & Ahlquist, P. (CRC, Boca Raton, FL), Vol. 3, pp. 195-208.
49. Diener, T. O. (1986) Proc. Natl. Acad. Sci. USA 83, 58-62.
50. Eigen, M. & Biebricher, C. K. (1988) in RNA Genetics, eds. Domingo, E., Holland, J. J. & Ahlquist, P. (CRC, Boca Raton, FL), Vol. 3, pp. 211-245.