Pre-Steady-State Kinetic Analysis of Processive DNA Replication Including Complete Characterization of an Exonuclease-Deficient Mutant

Biochemistry

Volumn 30, Issue 2, 1991, Pages 511-525

  Patel, Smita S ^a   Wong, Isaac ^a   Johnson, Kenneth A ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE; MUTANT PROTEIN;

ARTICLE; BACTERIOPHAGE T7; DNA REPLICATION; ENZYME KINETICS; NONHUMAN; PRIORITY JOURNAL;

BASE SEQUENCE; DIPHOSPHATES; DNA MUTATIONAL ANALYSIS; DNA REPLICATION; DNA-DIRECTED DNA POLYMERASE; EXODEOXYRIBONUCLEASES; KINETICS; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDES; SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, P.H.S.; T-PHAGES; THERMODYNAMICS; THYMINE NUCLEOTIDES;

EID: 0026033193     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi00216a029     Document Type: Article

References (44)

1. Anderson, K. S., Sikorski, J. A., & Johnson, K. A. (1988) Biochemistry 27, 7395–7406.
2. Barshop, B. A., Wrenn, R. F., & Frieden, C. (1983) Anal. Biochem. 130, 134–145.
3. Benkovic, S. J., & Schray, K. J. (1971) Enzymes (3rd Ed.) 8, 20a.
4. Bemad, A., Blanco, L., Lázaro, J. M., Martín, G., & Salas, M. (1989) Cell 59, 219–222.
5. Boosalis, M. S., Petruska, J., & Goodman, M. F. (1987) J. Biol. Chem. 262(30), 14689.
6. Brutlag, D., & Kornberg, A. (1972) J. Biol. Chem. 247, 241–248.
7. Bryant, F. R., Johnson, K. A., & Benkovic, S. J. (1983) Biochemistry 22, 3537–3546.
8. Derbyshire, F., Freemont, P. S., Sanderson, M. R., Beese, L., Friedman, J. M., Joyce, C. M., & Steitz, T. A. (1988) Science 240, 199–201.
9. Deutscher, M. P., & Kornberg, A. (1969) J. Biol. Chem. 244, 3019–3028.
10. Donlin, M. J., Patel, S. S., & Johnson, K. A. (1991) Biochemistry (third of three papers in this issue).
11. Fersht, A. (1985) Enzyme Structure and Mechanism, 2nd ed., p 363, W. H. Freeman & Co., New York.
12. Fuller, C. W., & Richardson, C. C. (1985a) J. Biol. Chem. 260, 3185–3196.
13. Fuller, C. W., & Richardson, C. C. (1985b) J. Biol. Chem. 260, 3197–3206.
14. Hopfield, J. J. (1974) Proc. Natl. Acad. Sci. U.S.A. 71, 4135.
15. Huber, H. E., Tabor, S., & Richardson, C. C. (1987) J. Biol. Chem. 262, 16224–16232.
16. Johnson, K. A. (1983) J. Biol. Chem. 258, 13825–13832.
17. Johnson, K. A. (1986) Methods Enzymol. 134, 677–705.
18. Joyce, C. M., & Steitz, T. A. (1987) Trends Biochem. Sci. 12, 288–292.
19. Kornberg, A. (1980) DNA Replication, W. H. Freeman & Co., San Francisco, CA.
20. Kornberg, A. (1982) Supplement to DNA Replication 1980, W. H. Freeman & Co., San Francisco, CA.
21. Kuchta, R. D., Mizrahi, V., Benkovic, P. A., Johnson, K. A., & Benkovic, S. J. (1987) Biochemistry 26, 8410–8417.
22. Kuchta, R. D., Benkovic, P. A., & Benkovic, S. J. (1988) Biochemistry 27, 6716–6725.
23. Kunkel, T. A., Beckman, R. A., & Loeb, L. A. (1986) J. Biol. Chem. 261, 13610–13616.
24. Lawyer, F. C., Stoffel, S., Saiki, R. K., Myambo, K., Drummond, R., & Gelfund, D. H. (1989) J. Biol. Chem. 264, 6427–6437.
25. Leavitt, M. C., & Ito, J. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 4465–4469.
26. Lin, T.-C., Rush, J., Spicer, E. K., & Königsberg, W. H. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 7000–7004.
27. Litman, R. M. (1968) J. Biol. Chem. 243, 6222–6233.
28. Loeb, L. A., & Kunkel, T. A. (1982) Annu. Rev. Biochem. 52, 429–457.
29. López, P., Martínez, S., Díaz, A., Espinosa, M., & Lacks, S. A. (1989) J. Biol. Chem. 264, 4255–4263.
30. Lunn, C. A., Kathju, S., Wallace, B. J., Kushner, S. R., & Pigiet, V. (1984) J. Biol. Chem. 259, 10469–10474.
31. Maniatis, T., Fritsch, E. F., & Sambrook, J. (1982) Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
32. McHenry, C. S. (1988) Annu. Rev. Biochem. 57, 519–550.
33. Mizrahi, V., Henrie, R. N., Marlier, J. F., Johnson, K. A., & Benkovic, S. J. (1985) Biochemistry 24, 4010–4018.
34. Modrich, P., & Richardson, C. C. (1975) J. Biol. Chem. 250, 5515–5522.
35. Ninio, J. (1975) Biochemie 57, 587.
36. Reha-Krantz, L. J. (1988a) in DNA Replication and Mutagenesis (Moses, R. E., & Summers, W. C., Eds.) p 34, American Society for Microbiology, Washington, DC.
37. Reha-Krantz, L. J. (1988b) J. Mol. Biol. 202, 711.
38. Reutimann, H., Sjoberg, B. M., & Holmgren, A. (1985) Proc. Natl. Acad. Ser. U.S.A. 82, 6787–6793.
39. Richardson, C. C., Beauchamp, B. B., Huber, H. E., Ikeda, R. A., Myers, J. A., Nakai, H., Rabkin, S. D., Tabor, S., & White, J. (1987) DNA Replication and Recombination, pp 151–171, Alan R. Liss, Inc., New York.
40. Stanssens, P., Opsomer, C., McKeown, Y. M., Kramer, W., Zabeau, M., & Fritz, H.-J. (1989) Nucleic Acids Res. 17, 4441–4454.
41. Tabor, S., & Richardson, C. C. (1989) J. Biol. Chem. 264, 6447–6458.
42. Tabor, S., Huber, H. E., & Richardson, C. C. (1987) J. Biol. Chem. 262, 16212–16223.
43. Wong, I., Patel, S. S., & Johnson, K. A. (1991) Biochemistry (second of three papers in this issue).
44. Zimmerlie, C. T., & Frieden, C. (1989) Biochem. J. 258, 381–387.