EcoRV Restriction Endonuclease Binds All DNA Sequences with Equal Affinity

Biochemistry

Volumn 30, Issue 36, 1991, Pages 8743-8753

  Taylor, John D ^a   Badcoe, Ian G ^b   Clarke, Anthony R ^b   Halford, Stephen E ^b  

^a DUKE UNIVERSITY MEDICAL CENTER   (United States)

^b UNIVERSITY OF BRISTOL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

RESTRICTION ENDONUCLEASE;

ARTICLE; BINDING AFFINITY; BINDING KINETICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING;

BINDING, COMPETITIVE; BUFFERS; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA; DNA-BINDING PROTEINS; EDETIC ACID; ELECTROPHORESIS, AGAR GEL; MAGNESIUM; MAGNESIUM CHLORIDE; NUCLEIC ACID CONFORMATION; SUBSTRATE SPECIFICITY; SUPPORT, NON-U.S. GOV'T;

EID: 0025889005     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi00100a005     Document Type: Article

References (51)

1. Aiken, C. R., Fisher, E. W., & Gumport, R. I. (1991) J. Biol. Chem. (in press).
2. Bading, H. (1988) Nucleic Acids Res. 16, 5241-5248.
3. Bennett, S. P., & Halford, S. E. (1989) Curr. Top. Cell. Regul. 30, 57-104.
4. Berg, O. G., Winter, R. B., & von Hippel, P. H. (1981) Biochemistry 20, 6929-6948.
5. Bergerat, A., & Guschlbauer, W. (1990) Nucleic Acids Res. 18, 4369-4375.
6. Bougueleret, L., Schwartzstein, M., Tsugita, A., & Zabeau, M. (1984) Nucleic Acids Res. 12, 3659-3676.
7. Bougueleret, L., Tenchini, M. L., Botterman, J., & Zabeau, M. (1985) Nucleic Acids Res. 13, 3823-3839.
8. Brenowitz, M., Senear, D. F., Shea, M. A., & Ackers, G. K. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 8462-8466.
9. Chance, E. M., Curtis, A. R., Jones, I. P., & Kirby, C. R. (1977) Facsimile: A Computer Program for Flow and Chemistry Simulation, and General Initial Value Problems, H. M. Stationery Office, London, U.K.
10. Chang, A. C. Y., & Cohen, S. N. (1978) J. Bacteriol. 134, 1141-1156.
11. Clore, G. M., Gronenborn, A. M., & Davies, R. W. (1982) J. Mol. Biol. 155, 447-466.
12. Creighton, T. E. (1984) Proteins, W. H. Freeman, New York.
13. D’Arcy, A., Brown, R. S., Zabeau, M., Van Resandt, R. W., & Winkler, F. K. (1985) J. Biol. Chem. 252, 1987-1990.
14. Edsall, J. T., & Gutfreund, H. (1983) Biothermodynamics, J. Wiley, New York.
15. Eger, B. T., Kuchta, R. D., Carroll, S. S., Benkovic, P. A., Dahlberg, M. E., Joyce, C. M., & Benkovic, S. J. (1991) Biochemistry 30, 1441-1448.
16. Ehbrecht, H.-J., Pingoud, A., Urbanke, C., Maass, G., & Gualerzi, C. (1985) J. Biol. Chem. 260, 6160-6166.
17. Fliess, A., Wolfes, H., Seela, F., & Pingoud, A. (1988) Nucleic Acids Res. 16, 11781-11793.
18. Fried, M. G. (1989) Electrophoresis 10, 366-376.
19. Fried, M. G., & Crothers, D. M. (1981) Nucleic Acids Res. 9, 6505-6525.
20. Garner, M., & Revzin, A. (1981) Nucleic Acids Res. 9, 3047-3060.
21. Gartenberg, M. R., & Crothers, D. M. (1988) Nature (London) 333, 824-829.
22. Hagerman, P. J. (1988) Annu. Rev. Biophys. Biophys. Chem. 17, 265-286.
23. Halford, S. E., & Johnson, N. P. (1980) Biochem. J. 191, 593-604.
24. Halford, S. E., & Goodall, A. J. (1988) Biochemistry 27, 1771-1777.
25. Halford, S. E., Lovelady, B. M., & McCallum, S. A. (1986) Gene 41, 173-181.
26. Jack, W. E., Terry, B. J., & Modrich, P. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 4010-4014.
27. Jencks, W. P. (1975) Adv. Enzymol. Relat. Areas Mol. Biol. 43, 219-410.
28. Kelly, R. C., Jensen, D. E., & von Hippel, P. H. (1976) J. Biol. Chem. 251, 7240-7250.
29. Lesser, D. R., Kurpiewski, M. R., & Jen-Jacobson, L. (1990) Science 250, 776-786.
30. Luke, P. A., McCallum, S. A., & Halford, S. E. (1987) Gene Amplif. Anal. 5, 183-205.
31. Mazzarelli, J., Scholtissek, S., & McLaughlin, L. W. (1989) Biochemistry 28, 4616-4622.
32. McGhee, J. D., & von Hippel, P. H. (1974) J. Mol. Biol. 86, 469-489.
33. Melançon, P., Burgess, R. R., & Record, M. T., Jr. (1983) Biochemistry 22, 5169-5176.
34. Newman, P. C., Williams, M. D., Cosstick, R., Seela, F., & Connolly, B. A. (1990) Biochemistry 29, 9902-9910.
35. Record, M. T., Jr., Anderson, C. F., & Lohman, T. M. (1978) Q. Rev. Biophys. 11, 103-178.
36. Rosenberg, J. M. (1991) Curr. Opin. Struct. Biol. 1, 104-113.
37. Sambrook, J., Fritsch, E. F., & Maniatis, T. (1989) Molecular Cloning, A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
38. Schildkraut, L., Banner, C. D., Rhodes, C. S., & Parekh, S. (1984) Gene 27, 327-329.
39. Seeman, N. C., Rosenberg, J. M., & Rich, A. (1976) Proc. Natl. Acad. Sci. U.S.A. 73, 804-808.
40. Strauss, F., & Varshavasky, A. (1984) Cell 37, 889-901.
41. Taylor, J. D. (1991) Ph.D. Thesis, University of Bristol.
42. Taylor, J. D., & Halford, S. E. (1989) Biochemistry 28, 6198-6207.
43. Taylor, J. D., Goodall, A. J., Vermote, C. L., & Halford, S. E. (1990) Biochemistry 29, 10727-10733.
44. Terry, B. J., Jack, W. E., Rubin, R. A., & Modrich, P. (1983) J. Biol. Chem. 258, 9820-9825.
45. Terry, B. J., Jack, W. E., & Modrich, P. (1985) J. Biol. Chem. 260, 13130-13137.
46. Thielking, V., Alves, J., Fliess, A., Maass, G., & Pingoud, A. (1990) Biochemistry 29, 4682-4691.
47. Twigg, A. J., & Sherratt, D. J. (1980) Nature (London) 283, 216-218.
48. von Hippel, P. H., & Berg, O. G. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 1608-1612.
49. von Hippel, P. H., & Berg, O. G. (1989) J. Biol. Chem. 264, 675-678.
50. Winkler, F. K., D’Arcy, A., Blocker, H., Frank, R., & van Boom, J. H. (1991) J. Mol. Biol. 217, 235-238.
51. Wright, D. J., King, K., & Modrich, P. (1989) J. Biol. Chem. 264, 11816-11821.