Detection of common three‐dimensional substructures in proteins

Proteins: Structure, Function, and Bioinformatics

Volumn 11, Issue 1, 1991, Pages 52-58

  Vriend, Gerrit ^a   Sander, Chris ^a  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

clustering; folding units; protein structure comparison; sequence alignment; superposition

Indexed keywords

FERREDOXIN; UBIQUITIN;

ALGORITHM; ARTICLE; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE;

ALGORITHMS; AZURIN; FERREDOXINS; HEMOGLOBINS; MODELS, MOLECULAR; PLASTOCYANIN; PROTEIN CONFORMATION; PROTEINS; SEQUENCE ALIGNMENT; SOFTWARE; THIOSULFATE SULFURTRANSFERASE; UBIQUITINS;

EID: 0025744920     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.340110107     Document Type: Article

References (29)

1. Structure of bovine liver rhodanese
2. Phylogenetic relationships from three‐dimensional protein structures
3. How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
4. Conservation of residue interactions in a family of Ca‐binding proteins
5. Evolution of protein cores
6. A discussion of the solution for the best rotation to relate two sets of vectors
7. Protein structure alignment
8. Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming
9. The alignment of protein structures in three dimensions
10. A method for the systematic comparison of the three‐dimensional structures of proteins of some results
11. A systematic approach to the comparison of protein structures
12. A general method to assess similarity of protein structures, with applications to T4 bacteriophase lysozyme
13. Detection of 3‐D patterns of atoms in chemical structures
14. Rapid geometric searches in protein structures
15. LOPAL and SCAMP: techniques for the comparison and display of protein structures
16. Exploring structural homology of proteins
17. Comparison of super‐secondary structures in proteins
18. A simple qualitative representation of polypeptide chain folds: Comparison of protein tertiary structures
19. An automatic search for similar spatial arrangements of alpha helices and beta strands in globular proteins
20. Using known fragments in protein model building and crystallography
21. Dictionary of protein secondary structure: pattern recognition of hydrogen‐bonded and geometrical features
22. The crystal structure of human deoxyhaemoglobin at 1.74 Å resolution
23. Structure of oxidized popular plastocyanin at 1.6 Å resolution
24. Structure of azurin from alcaligenes denitrificans. Refinement at 1.8 Å resolution and comparison of the two crystallographically independent molecules
25. Structure of ubiquitin refined at 1.8 Å resolution
26. Structure of a (2Fe‐2S) ferredoxin from spirulina platensis. Main chain fold and location of side chains at 2.5 Å resolution
27. WHAT IF: A Molecular Modeling and Drug Design Program
28. The Protein Data Bank: A Computer‐based Archival File for Macromolecular Structures