Predicting optimal and suboptimal secondary structure for RNA

Methods in Enzymology

Volumn 183, Issue C, 1990, Pages 281-306

  Jaeger, John A ^a   Turner, Douglas H ^a   Zuker, Michael ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER ANALYSIS; PREDICTION; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RNA STRUCTURE;

EID: 0025361553     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/0076-6879(90)83019-6     Document Type: Article

References (33)

1. Kim, S.H., Suddath, F.L., Quigley, G.J., McPherson, A, Sussman, J.L., Wang, A.H.J., Seeman, N.C., Rich, A, Science, 185, 1974, 435.
2. Crothers, D.M., Cole, P.E., Transfer RNA. Altman, S, (eds.), 1978, MIT Press, Cambridge, Massachusetts, 196.
3. Riesner, D, Romer, R, Duchesne, J., (eds.), 4th Ed. Physicochemical Properties of Nucleic Acids, Vol 2, 1973, MIT Press, New York, 237.
4. C.R., Woese, R., Gutel, R., Gupta, H.F., Noller, Microbiol. Rev, For example, (1983), 47, 621
5. Tinoco, I. Jr, Uhlenbeck, O.C., Levine, M.D., Nature (London), 230, 1971, 362.
6. Jaeger, J.A., Turner, D.H., Zuker, M, 4th Ed. Proc. Natl. Acad. Sci. U.S.A., 1989 (in press).
7. Zuker, M, Science, 244, 1989, 48.
8. Zuker, M, Steigler, P, Nucleic Acids Res., 9, 1981, 133.
9. Nussinov, R, Pieczenik, G, Griggs, J.R., Kleitman, D.J., SIAM J. Appl. Math., 35, 1978, 68.
10. Roode, D, Liebschutz, R, Maulik, S, Friedemann, T, Benton, D, Kristofferson, D, Nucleic Acids Res., 16, 1988, 1857.
11. Bilofsky, H.S., Burks, C, Nucleic Acids Res., 16, 1988, 1861.
12. Sidman, K.E., George, D.G., Barker, W.C., Hunt, L.T., Nucleic Acids Res., 16, 1988, 1869.
13. Cameron, G.N., Nucleic Acids Res., 16, 1988, 1865.
14. C., Ehresmann, F., Baudin, M., Mougel, P., Romby, J.P., Ebel, B., Ehresmann, Nucleic Acids Res, (1987), 15, 9109
15. Turner, D.H., Sugimoto, N, Freier, S.M., Annu. Rev. Biophys. Biophys. Chem, 17, 1988, 167.
16. Freier, S.M., Kierzek, R, Jaeger, J.A., Sugimoto, N, Caruthers, M.H., Neilson, T, Turner, D.H., 4th Ed. Proc. Nad. Acad. Sci. U.S.A., 83, 1986, 9373.
17. Jacobson, H, Stockmayer, W.H., J. Chem. Phys., 18, 1950, 1600.
18. C., Tuerk, P., Gauss, C., Thermes, D.R., Grobe, M., Gayle, N., Guild, G., Stormo, Y., d'Aubenton-Carafa, O.C., Uhlenbeck, I., Tinoco, Jr., E.N., Brody, L., Gold, Proc. Nad. Acad. Sci. U.S.A, 4th Ed., (1988), 85, 1364
19. Woese, C.R., Microbiol. Rev., 51, 1987, 221.
20. Turner, D.H., Sugimoto, N, Kierzek, R, Dreiker, S.D., J. Am. Chem. Soc., 109, 1987, 3783.
21. M. Zuker, this series, Vol. 180, p. 262.
22. Devereux, J., Haeberli, P, Smithies, O, Nucleic Acids Res., 12, 1984, 387.
23. Shapiro, B.A., Maizel, J., Lipkin, L.E., Currey, K, Whitney, C, Nucleic Acids Res., 12, 1984, 75.
24. Bruccoleri, R.E., Heinrich, G, CABIOS, 4, 1988, 167.
25. Michel, F, Dujon, B, EMBO J., 2, 1983, 23.
26. Burke, J.M., Belfort, M, Cech, T.R., Davies, R.W., Schweyen, R.J., Shub, D.A., Szostak, J.W., Tabak, H.F., Nucleic Acids Res., 15, 1987, 7217.
27. W. Van de Ven, A. Roebroek, and J. Schalken, Eur. Patent 87,200,940.2 (1987).
28. Inoue, T, Cech, T, 4th Ed. Proc. Natl. Acid. Sci. U.S.A., 82, 1985, 648.
29. F. Michel, personal communication (1988).
30. Cech, T.R., Tanner, N.K., Tinoco, I. Jr, Weir, B.R., Zuker, M, Perlman, P.S., 4th Ed. Proc. Natl. Acad. Sci. U.S.A., 80, 1983, 3903.
31. G., Gröger, F., Ramalho-Ortigao, H., Steil, H., Seliger, Nucleic Acids Res, For example, (1988), 16, 7763
32. E.V., Prochownik, J., Kukowska, C., Rodgers, Mol. Cell. Biol, For example, (1988), 8, 3683
33. G. Skuse and P. Rowley, personal communication (1988).