Incorporation of a Complete Set of Deoxyadenosine and Thymidine Analogues Suitable for the Study of Protein Nucleic Acid Interactions into Oligodeoxynucleotides. Application to the EcoRV Restriction Endonuclease and Modification Methylase

Biochemistry

Volumn 29, Issue 42, 1990, Pages 9891-9901

  Newman, Patrick C ^a   Nwosu, Victor U ^a,d   Connolly, Bernard A ^a   Williams, David M ^b,e   Cosstick, Richard ^b   Seela, Frank ^c  

^a UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

^b UNIVERSITY OF LIVERPOOL   (United Kingdom)

^c UNIVERSITY OF OSNABRÜCK   (Germany)

^d EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^e MAX PLANCK INSTITUTE OF EXPERIMENTAL MEDICINE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BENZO[A]PYRENEDIOL EPOXIDE DEOXYADENOSINE; RESTRICTION ENDONUCLEASE; THYMIDINE; UNCLASSIFIED DRUG;

ARTICLE; GENETIC ENGINEERING; PRIORITY JOURNAL; PROTEIN DNA INTERACTION;

ADENOSINE; BASE SEQUENCE; COMPARATIVE STUDY; DEOXYADENOSINES; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA-BINDING PROTEINS; MOLECULAR CONFORMATION; MOLECULAR SEQUENCE DATA; OLIGODEOXYRIBONUCLEOTIDES; PROTEIN BINDING; SITE-SPECIFIC DNA-METHYLTRANSFERASE (ADENINE-SPECIFIC); STRUCTURE-ACTIVITY RELATIONSHIP; SUBSTRATE SPECIFICITY; SUPPORT, NON-U.S. GOV'T; THYMIDINE;

EID: 0025151421     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi00494a020     Document Type: Article

References (60)

1. Aggarwal, A. K., Rogers, D., Drotter, M., Ptashne, M., & Harrison, S. C. (1988) Science 242, 899-907.
2. Anderson, J. E., Ptashne, M., & Harrison, S. C. (1987) Nature 326, 846-852.
3. Bennett, S. P., & Halford, S. E. (1989) Curr. Top. Cell. Regul. 30, 57-104.
4. Bougueleret, L., Schwartzstein, M., Tsugita, A., & Zabeau, M. (1984) Nucleic Acids Res. 12, 3654-3676.
5. Bougueleret, L., Tenchini, M. L., Botterman, J., & Zabeau, M. (1985) Nucleic Acids Res. 13, 3823-3839.
6. Brennan, C. A., VanCleve, M. D., & Gumport, R. I. (1986) J. Biol. Chem. 261, 846-852.
7. Brennan, R. G., & Matthews, B. W. (1989) J. Biol. Chem. 264, 1903-1906.
8. Chirikjian, J. G. (1987) Restriction Endonucleases and Methylases, Elsevier, New York.
9. Clore, G. M., Oschkinat, M., McLaughlin, L. W., Benseler, F., Happ, C. S., Happe, E., & Gronenborn, A. W. (1988) Biochemistry 27, 4185-4197.
10. Connolly, B. A., & Newman, P. (1989) Nucleic Acids Res. 17, 4957-4974.
11. D'Arcy, A., Brown, R. S., Zabeau, M., Van Resandt, R. W., & Winkler, F. K. (1985) J. Biol. Chem. 260, 1987-1990.
12. Drew, H. R., McCall, M. J., & Calladine, C. R. (1988) Annu. Rev. Cell Biol. 4, 1-20.
13. Dwyer-Hallquist, P., Kezdy, F. J., & Agarwal, K. L. (1982) Biochemistry 21, 4693-4700.
14. Faerber, P., & Scheit, K. H. (1970) Chem. Ber. 103, 1307-1311.
15. Fairall, L., Martin, S., & Rhodes, D. (1989) EMBO J. 8, 1809-1817.
16. Fasman, G. D. (1975) CRC Handbook of Biochemistry and Molecular Biology, 3rd ed., Nucleic Acids Vol. I., pp 65-213 and 419-449, CRC, Cleveland, OH.
17. Fersht, A. R. (1987) Trends Biochem. Sci. 12, 301-304.
18. Fisher, E. F., & Caruthers, M. H. (1979) Nucleic Acids Res. 7, 401-416.
19. Fliess, A., Wolfes, H., Rosenthal, A., Schwellus, K., Blocker, H., Frank, R., & Pinground, A. (1986) Nucleic Acids Res. 14, 3463-3474.
20. Fliess, A., Wolfes, H., Seela, F., & Pingoud, A. (1988) Nucleic Acids Res. 16, 11781-11793.
21. Fox, J. J., Praag, D. V., Wempen, I., Doerr, I. L., Cheong, L., Knoll, J. E., Eidinoff, M. L., Bendich, A., & Brown, G. B. (1959) J. Am. Chem. Soc. 81, 178-187.
22. Garnett, J., & Halford, S. E. (1988) Gene 74, 73-76.
23. Gildea, B. & McLaughlin, L. W. (1989) Nucleic Acids Res. 12, 4539-4557.
24. Goeddel, D. V., Yansura, D. G., Winston, C., & Caruthers, M. H. (1978) J. Mol. Biol. 123, 723-737.
25. Halford, S. E., & Goodall, A. J. (1988) Biochemistry 27, 1771-1777.
26. Halford, S. E., Loveday, B. M., & McCallum, S. A. (1986) Gene 41, 173-181.
27. Hayakawa, T., Ono, A., & Ueda, T. (1988) Nucleic Acids Res. 16, 4761-4776.
28. Ikuta, S., Eritja, R., Kaplan, B. E., & Itakura, K. C. (1987) Biochemistry 26, 5646-5650.
29. Ivanov, V. I., Minchenkova, L. E., Schyolkima, A. K., & Poletayer, A. I. (1973) Biopolymers 12, 89-110.
30. Jiricny, J., Wood, S. G., Martin, D., & Ubasawa, A. (1986) Nucleic Acids Res. 14, 6579-6590.
31. Jordan, S. R., & Pabo, C. O. (1988) Science 242, 893-899.
32. Kennard, O., & Hunter, W. (1988) Landolt-Borstein Data New Series Group VII, Vol. 1a, pp 255-360, Springer-Verlag, Berlin.
33. Luke, P. A., McCallum, S. A., & Halford, S. E. (1987) Gene Amplif. Anal. 5, 183-205.
34. Matthews, B. W. (1988) Nature 335, 294-295.
35. Mazzarelli, J., Scholtissek, S., & McLaughlin, L. W. (1989) Biochemistry 28, 4616-4622.
36. McClarin, J. A., Fredrick, C. A., Wang, B. C., Greene, P., Boyer, H. W., Grable, J., & Rosenberg, J. M. (1986) Science 234, 1526-1541.
37. McLaughlin, L. W., Benseler, F., Greaser, E., Piel, N., & Scholtissek, S. (1987) Biochemistry 26, 7238-7245.
38. Modrich, P. (1982) CRC Crit. Rev. Biochem. 13, 287-323.
39. Nair, V., & Chamberlain, S. D. (1984) Synthesis, 401-403.
40. Nwosu, V. U., Connolly, B. A., Halford, S. E., & Garnett, J. (1988) Nucleic Acids Res. 16, 3705-3720.
41. Ohlendorf, D. H., & Matthews, B. W. (1983) Annu. Rev. Biophys. Bioeng. 12, 259-284.
42. Ono, A., & Ueda, T. (1987) Nucleic Acids Res. 15, 3059-3072.
43. Ono, A., Sato, M., Ohtani, Y., & Ueda, T. (1984) Nucleic Acids Res. 12, 8939-8947.
44. Ott, J., Eckstein, F., & Connolly, B. A. (1985) Nucleic Acids Res. 13, 6317-6329.
45. Otwinowski, Z., Schevitz, R. W., Zheng, R. G., Lawson, C., Joachimiak, A., Marmorstein, R. Q., Luisi, B. F., & Sigler, P. B. (1988) Nature 335, 321-329.
46. Pabo, C. O., & Sauer, R. T. (1984) Annu. Rev. Biochem. 53, 293-321.
47. Saenger, W. (1985) in Principles of Nucleic Acid Structure, p 371, Springer-Verlag, Berlin.
48. Schildkraut, I., Banner, C. D., Rhodes, C. S., & Parekh, S. (1984) Gene 27, 327-329.
49. Seela, F., & Driller, H. (1986) Nucleic Acids Res. 14, 2319-2332.
50. Seela, F., & Kehne, A. (1983) Justus Liebigs Ann. Chem., 876-884.
51. Seela, F., & Kehne, A. (1987) Biochemistry 26, 2232-2238.
52. Seeman, N. C., Rosenberg, J. M., & Rich, A. (1976) Proc. Natl. Acad. Sci. U.S.A. 73, 804-808.
53. Such, D., Lahm, A., & Oefner, C. (1988) Nature 332, 465-468.
54. Taylor, J. D., & Halford, S. E. (1989) Biochemistry 28, 6198-9207.
55. Travers, A. A. (1988) Annu. Rev. Biochem. 58, 427-452.
56. Wightman, R., & Holy, A. (1973) Collect. Czech. Chem. Commun. 38, 1381-1397.
57. Winkler, F. K., Brown, R. S., Leonard, K., & Berriman, J. (1986) Crystallography and Molecular Biology, NATO Advanced Study Institute, pp 345-352, Plenum Press, New York.
58. Wohlberger, C., Dang, Y., Ptashne, M., & Harrison, S. C. (1988) Nature 35, 789-795.
59. Yansura, D. G., Goeddel, D. V., Kundu, A., & Caruthers, M. H. (1977) Nucleic Acids Res. 4, 723-737.
60. Yolov, A. A., Vinogradova, M. N., Gromova, E. S., Rosenthal, A., Cech, D., Veiko, V. P., Metelev, V. G., Kosyhyk, V. A., Buryanov, Y. I., Bayeu, A. A., & Shaborova, Z. A. (1985) Nucleic Acids Res. 13, 8983-8998.