Geometry of interaction of metal ions with histidine residues in protein structures

Protein Engineering, Design and Selection

Volumn 4, Issue 1, 1990, Pages 57-63

  Chakrabarti, P ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Binding geometry; Histidine ligand; Metals; Protein secondary structure; Side chain conformation

Indexed keywords

HISTIDINE; METAL ION;

ARTICLE; PROTEIN CONFORMATION; PROTEIN STRUCTURE;

HISTIDINE; HYDROGEN BONDING; IMIDAZOLES; METALS; NITROGEN; PROTEIN CONFORMATION; PROTEINS;

EID: 0025013362     PISSN: 17410126     EISSN: 17410134     Source Type: Journal    
DOI: 10.1093/protein/4.1.57     Document Type: Article

References (65)

1. Allen, J.P., Feher, G., Yeates, T.O., Komiya, H. and Rees, D.C. (1987) Proc. Nail. Acad. Sci. USA, 84, 6162–6166.
2. Argos, P., Garavito, R.M., Eventoff, W., Rossmann, M.G. and Branderi, C.I. (1978) J Mol. Biol., 126, 141–158.
3. Ashikawa, J. and Itoh, K. (1978) Chem. Lett., 681–684.
4. Baker, E.N (1988) J. Mol. Biol., 203, 1071–1095.
5. Berg, J.M. (1988) Proc. Nail. Acad. Sci. USA, 85, 99–102.
6. Bernstein, F.C, Koetzle, T.F., Williams, G.J.B., Meyer, E.F Jr, Brice, M.D, Rodgers, J.R., Kennard, O., Shimanouchi, T. and Tasumj, M. (1977) J. Mol. Biol., 112, 535–542.
7. Bhat, T.N., Sasisekharan, V. and Vijayan, M. (1979) Int. J Peptide Protein Res., 13, 170–184.
8. Blundell, T.L., Pitts, J.E, Tickle, I.J. Wood, S.P and Wu, C.-W (1981) Proc. Nail. Acad Sci. USA, 78, 4175–4179.
9. Brünger, A.T., Kunyan, J. and Karplus, M. (1987) Science, 235, 458–460.
10. Bordas, J., Dodson, G.G., Grewe, H., Koch, M.H.J., Krebs, B. and Randall, J. (1983) Proc. R. Soc. Lend., Ser B, 219, 21–39.
11. Carter, D.C. Melis, K.A., O'Donnell, S.E., Burgess, B.K., Furey, W.F. Jr, Wang, B. and Stout, C.D. (1985) J. Mol. Biol., 184, 279–295.
12. Chakrabarti, P. (1989) Biochemistry, 28, 6081–6085.
13. Chakrabarti, P. (1990a) Protein Engng, 4, 49–56.
14. Chakrabarti, P. (1990b) Biochemistry, 29, 651–658.
15. Chnstianson, D.W. and Alexander, R.S (1989) J. Am. Chem. Soc., 111, 6412–6419.
16. Colonna-Cesari, F., Perahia, D., Karplus, M., Eklund, H, Branden, C.I and Tapia, O. (1986) J. Biol. Chem., 261, 15273–15280.
17. Deisenhofer, J., Epp, O., Miki, K., Huber, R. and Michel, H. (1985) Nature, 318, 618–624.
18. Fermi, G. Perutz, M.F and Shaanan, B. (1984) J Mol Biol., 175, 159–174.
19. Fmzel, B.C. Poulos, T.L. and Kraut J. (1984) J Biol. Chem., 259, 13027–13036.
20. Finzel, B.C. Weber P C. Hardman, K.D and Salemme, F.R. (1985) J Mol Biol. 186, 627–643.
21. Fujinaga, M and James, M.N.G. (1987) J. Mol Biol. 195, 373–396.
22. Gray, T.M. and Matthews, B.W. (1984) J. Mol. Biol., 175, 75–81.
23. Guss, J.M. and Freeman, H.C. (1983) J. Mol. Biol., 169, 521–563.
24. Guss, J.M., Merritt, E.A., Phizackerley, R.P., Hedman, B., Murata, M., Hodgson, K.O. and Freeman, H.C. (1988) Science, 241, 806–811.
25. Hardman, K.D., Agarwal, R.C. and Freiser, M.J (1982) J Mol Biol. 157, 69–86.
26. Hendrickson, W.A. and Konnert, J.H. (1980) In Diamond, R, Ramaseshan, S. and Venkatesan, K (eds). Computing in Crystallography. Indian Academy of Sciences. Bangalore, pp. 13.01–13.23.
27. Higuchi, Y., Kusunoki, M., Malsuura, Y, Yasuoka, N. and Kakudo, M (1984) J. Mol Biol. 172, 109–139.
28. Holmes, M.A. and Matthews, B.W. (1982) J. Mol. Biol, 160, 623–639.
29. Hough, E., Hansen, L.K., Birknes, B., Jynge, K., Hansen, S., Hordvik, A, Uttle, C. Dodson, E. and Derewenda, Z. (1989) Nature, 338, 357–360.
30. Janin, J., Wodak, S., Levitt, M. and Maigret, B. (1978) J. Mol. Biol, 125, 357–386.
31. Kabsch, W. and Sander, C (1983) Biopolymers, 22, 2577–2637.
32. Kannan, K.K. and Ramanadham, M. (1981) Int. J. Quantum Chem, 20, 199–209.
33. Lederer, F., Glatigny, A., Bethge, P.H., Bellamy, H.D. and Mathews, F.S. (1981) J. Mol Biol., 148, 427–448.
34. Mathews, F.S. (1985) Prog. Biophys. Mol. Biol, 45, 1–56.
35. Mathews, F.S., Levin, M. and Argos, P. (1972) J. Mol. Biol, 64, 449–464.
36. Matsuura, Y., Takano, T. and Dickerson, R.E. (1982) J. Mol. Biol, 156, 389–409.
37. Mayo, S.L., Ellis, W.R., Jr, Crutchley, R.J. and Gray, H.B. (1986) Science, 233, 948–952.
38. McGregor, M.J., Islam, S.A and Stemberg, M.J.E. (1987) J. Mol. Biol, 198, 295–310.
39. Ohlendorf, D.H., Lipscomb, J.D. and Weber, P.C. (1988) Nature, 336, 403–405.
40. Osvath, P., Salmon, G.A. and Sykes, A.G. (1988) J. Am. Chem. Soc, 110, 7114–7118.
41. Petratos, K., Dauter, Z. and Wilson, K.S. (1988) Acta Crystallogr, B, 44, 628–636.
42. Phillips, S.E.V. (1980) J. Mol. Biol., 142, 531–554.
43. Putsyn, O.B. (1969) J. Mol. Biol, 42, 501–510.
44. Rebe, U., Jr (1987) Science, 235, 1478–1484.
45. Rees, D.C, Lewis, M. and Lipscomb, W.N. (1983) J. Mol. Biol, 168, 367–387.
46. Reynolds, W.F., Peat, I.R., Freedman, M.H. and Lyerla, J.R., Jr (1973) J. Am. Chem. Soc, 95, 328–331.
47. Richardson, J.S. and Richardson, D.C. (1988) Science, 240, 1648–1652.
48. Salemme, F.R., Freer, S.T., Xuong, N.H., Alden, R.A. and Kraut J. (1973) J. Biol. Chem., 248, 3910–3921.
49. Shoemaker, K.R., Kim, P.S., York, E.J., Stewart, J.M. and Baldwin, R.L (1987) Nature, 326, 563–567.
50. Smulevich, G., Mauro, J.M, Fishel, L.A, English, A.M, Kraut J and Spiro, T.G. (1988) Biochemistry, 27, 5477–5485.
51. Sowadski, J.M., Handschumacher, M.D, Murthy, H.M.K., Foster, B.A and Wyckoff, H.W. (1985) J. Mol Biol, 186, 417–433.
52. Steigemann, W. and Weber, E. (1979) J. Mol. Biol, 127, 309–338.
53. Stenkamp, R.E., Sieker, L.C and Jensen, L.H (1983) Acta Crystallogr B. 39, 697–703.
54. Sundberg, RJ and Martin, R.B. (1974) Chem. Rev., 74, 471–517.
55. Tainer, J.A., Getzoff, E.D., Beem, K.M, Richardson, J.S and Richardson, D.C. (1982) J. Mol. Biol., 160, 181–217.
56. Takano, T. and Dickerson, R.E. (1980) Proc. Nail. Acad Sci. USA, 77, 6371–6375.
57. Tanokura, M. (1983) Biochim. Biophys. Acta, 742, 576–585.
58. Tronrud, D.E., Schmid, M.F. and Matthews, B.W (1986) J. Mol. Biol, 188, 443–454.
59. Valentine, J.S., Shcridan, R.P, Allen, L.C and Kahn, P.C. (1979) Proc. Nail. Acad. Sci. USA, 76, 1009–1013.
60. Vcdani, A. and Dunitz, J.D (1985) J Am. Chem Soc, 107, 7653–7658.
61. Volbeda, A and Hol, W.G.J. (1989) J. Mol. Biol, 206, 531–546.
62. Wasylishen, R.E. and Tomlinson, G. (1977) Can. J Biochem., 55, 579–582.
63. Wilmw, C.M. and Thomton, J.M. (1988) J. Mol. Biol, 203, 221–232.
64. Yamashila, M.M., Almassy, R.J., Janson, C.A., Cascio, D. and Eisenberg, D (1989) J. Biol. Chem., 264, 17681–17690.
65. Zvelebil, M.J.J.M. and Stemberg, M.J.E (1988) Protein Engng, 2, 127–138.