3-d graphics modelling of the trna-like 3’-end of turnip yellow mosaic virus rna: Structural and functional implications

Journal of Biomolecular Structure and Dynamics

Volumn 4, Issue 5, 1987, Pages 707-728

  Dumas, P ^a   Moras, D ^a   Florentz, C ^a   Giege, R ^a   Verlaan, P ^b   Van Belkum, A ^b   Pleij, C W A ^b  

^a INSTITUT DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

^b LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSFER RNA; VALINE TRANSFER RNA LIGASE; VALINE TRNA LIGASE; VIRUS RNA;

ARTICLE; CHEMICAL STRUCTURE; COMPARATIVE STUDY; COMPUTER GRAPHICS; CONFORMATION; GENETICS; METABOLISM; MOLECULAR GENETICS; MOSAIC VIRUS; NUCLEOTIDE SEQUENCE; RNA SPLICING; STRUCTURE ACTIVITY RELATION; ULTRASTRUCTURE; VIRUS GENE;

BASE SEQUENCE; COMPARATIVE STUDY; COMPUTER GRAPHICS; GENES, VIRAL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOSAIC VIRUSES; NUCLEIC ACID CONFORMATION; RNA SPLICING; RNA, TRANSFER; RNA, VIRAL; STRUCTURE-ACTIVITY RELATIONSHIP; SUPPORT, NON-U.S. GOV'T; VALINE-TRNA LIGASE;

EID: 0023316092     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1987.10507674     Document Type: Article

References (54)

1. Hall, T.C., Int. Rev. Cytol.60, 1 (1979).
2. Haenni, AL., Joshi, S. and Chapeville, F., in “Progress in Nucleic Acids Research and Molecular Biol-ogy”, Cohn, W.E., ed., Vol. 27, pp. 85-105, Academic Press, New York (1982).
3. Pinck, M., Yot, P., Chapeville, F. and Duranton, H., Nature (London), 226, 954 (1970).
4. Hall, T.C., Shih, D.S. and Kaesberg, P., Biochem. J.129,969 (1972).
5. Giege, R., Briand, J.P., Mengual, R., Ebel, J.P. and Hirth, L., Eur. J. Biochem.84, 251 (1978).
6. Ahlquist, P., Dasgupta, R. and Kaesberg, P., Cell23, 183 (1981).
7. Rietveld, K, van Poelgeest, R., Pleij, C.W.A, van Boom, J.H., Bosch, L., Nucleic Acids Res. 10, 1929 (1982).
8. Florentz, C, Briand, J.P, Romby, P, Hirth, L, Ebel, J.P. and Giege, R,.fiMBO J. 7, 269 (1982)
9. Joshi, R.L., Joshi, S., Chapeville, F. and Haenni, AL., EMBO J. 2, 1123 (1983).
10. Rietveld, K, Pleij, C.WA and Bosch, L., EMBO J. 2, 1079 (1983).
11. Rietveld, K, Linschooten, K, Pleij, C.WA and Bosch, L., EMBO J. 3, 2613 (1984).
12. Bonnet, J., Ebel, J.P., Dirheimer, G., Shershneva, L.P., Krutilina, AI., Venkstem, T.V. and Bayev, AA, Biochimie56,1211 (1974).
13. Kim, S.H., Suddath, F.L., Quigley, G.T., Me Pherson, A, Sussman, J.L., Wang, AH.J., Seeman, N.C. and Rich, A, Science185,435 (1974).
14. Robertus, J.D., Ladner, J.E., Finch, J.T., Rhodes, D., Brown, R.S., Clark, B.F.C. and Klug, A,Nature (London)250,546 (1974).
15. Pleij, C.WA, Rietveld, K and Bosch, L., Nucleic Acids Res. 13,1717 (1985).
16. Briand, J.P., Jonard, G., Guilley, H., Richards, KE. and Hirth L., Eur. J. Biochem.12,453 (1977).
17. Silberklang, M., Prochiantz, A, Haenni, AL. and RajBhandary, U.L., Eur. J. Biochem.720, 464 (1977).
18. Jones, A, J. Appl. Cryst.11,268 (1978).
19. Pflugrath, J.W., Saper, M.A and Quiocho, FA, J. Mol. Graphics1, 53 (1983).
20. Westhof, E., Dumas, P. and Moras, D., J. Mol. Biol.184, 119 (1985).
21. Joshi, S., Chapeville, F. and Haenni, AL., Nucleic Acids Res. 10,1947 (1982).
22. Joshi, R.L., Joshi, S., Chapeville, F. and Haenni, AL., EMBOJ. 2, 1123 (1983).
23. Sprinzl, M., Moll, J., Meissner, F. and Hartmann, T., Nucleic Acids Res. 13, Supplement (1985).
24. Goddard, J.P., Prog. Biophys. Molec. Biol.32, 233 (1977).
25. Program NAHELIX written by E. Westhof.
26. Davies, R.W., Waring, R.B., Ray, J.A, Brown, T.A and Scazzocchio, C., Nature (London)300, 719 (1982).
27. Levitt, M., Nature (London)224, 759 (1969).
28. Saenger, W., in “Principles of Nucleic Acids Structures”, Springer Advanced Texts in Chemistry, Springer-Verlag, New York (1984).
29. Miller, WA, Dreher, T.W. and Hall, T.C., Nature (London)313,68 (1985).
30. Miller, W.A, Bujarski, JJ., Dreher, T.W. and Hall, T.C., J. Mol. Biol.187, 537 (1986).
31. Quigley, G. and Rich, A, Science194, 796 (1976).
32. Van Belkum, A, Bingkun, J., Rietveld, K, Pleij, C.WA and Bosch, L., Biochemistry, in press.
33. Peattie, D.A, Proc. Nat. Acad. Sci. U.SA.76,1760 (1979).
34. Cold Spring Harbor Symposium for Quantitative Biology, Vol. 42, Part 1 (1977).
35. Abelson, J, Annu. Rev. Biochem. 48,1035 (1979).
36. Breathnach, R. and Chambon, P., Annu. Rev. Biochem. 50,349 (1981).
37. Chu F. K, Maley G.F, Maley and F. Belfort, Proc. Nat. Acad. Sci. U.SA. 30,49 (1984).
38. Cech, T.R., Cell34, 713 (1983).
39. Cech, T.R., Cell44,207 (1986).
40. Kruger, K., Grabowski, PJ., Zaug, AJ., Sands, J., Gottschling, D.E., Cech, T.R, Cell31,147 (1982).
41. Zaug, AJ., Grabowski, P.J., Cech, T.R., Nature (London)301,578 (1983).
42. Peebles, C.L., Perlman, P.S., Mecklenburg, K.L., Petrillo, M.L., Tabor, J.H., Jarrell, K.A, Cheng, H.L., Cell44, 213 (1986).
43. van der Veen, R., Amberg, AC., van der Horst, G., Bonen, L., Tabak, H.F. and Grivell, LA, Cell44, 225 (1986).
44. Michel, F., Jacquier, A and Dujon, Biochimie64, 867 (1982).
45. Michel, F., Dujon, B” EMBO J. 2, 33 (1983).
46. Inoue, T., Sullivan, F.X. and Cech, T.R., J Mol. Biol. 189, 143 (1986).
47. Vlassov, V.V., Giege, R. and Ebel, J.P., Eur. J. Biochem.119, 51 (1981).
48. Romby, P., Moras, D., Bergdoll, M., Dumas, P., Vlassov, V.V., Westhof, E., Ebel, J.P., Giege, R., J. Mol. Biol. 184, 455 (1985).
49. Roberts, RJ., J. Biol. Chem. 249,4787 (1974).
50. Florentz, C. and Giege, R., J. Mol. Biol. 190, 117 (1986).
51. Florentz, C., Mengual, R., Briand, J.P. and Giege, R., Eur. J. Biochem.123, 89 (1982).
52. Vlassov, V., Kern, D., Romby, P., Giege, R. and Ebel, J.P., Eur. J. Biochem.132, 537 (1983).
53. Brennan, T. and Sundaralingam, M., Nucl. Acids Res.3, 3235 (1976).
54. De Bruijn, M.H. and Klug, A, EMBO J. 2, 1309 (1983).