Methidiumpropyl-EDTA-Fe(II) and DNase I footprinting report different small molecule binding site sizes on DNA

Nucleic Acids Research

Volumn 11, Issue 16, 1983, Pages 5555-5567

  Dyke, Michael W van ^a   Dervan, Peter B ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOMYCIN A3; DACTINOMYCIN; DEOXYRIBONUCLEASE; DEOXYRIBONUCLEASE I; DISTAMYCIN A; DNA; DRUG DERIVATIVE; EDETIC ACID; METHIDIUMPROPYL EDTA IRON(II); METHIDIUMPROPYL-EDTA-IRON(II); REPRESSOR PROTEIN;

ARTICLE; CHEMISTRY; DNA BASE COMPOSITION; ENZYME SPECIFICITY; GENETICS; METABOLISM; NUCLEOTIDE SEQUENCE; PLASMID;

BASE COMPOSITION; BASE SEQUENCE; CHEMISTRY; CHROMOMYCIN A3; DACTINOMYCIN; DEOXYRIBONUCLEASE I; DISTAMYCINS; DNA; EDETIC ACID; ENDODEOXYRIBONUCLEASES; PLASMIDS; REPRESSOR PROTEINS; SUBSTRATE SPECIFICITY; SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, P.H.S.;

EID: 0021112472     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/11.16.5555     Document Type: Article

References (29)

1. Galas, D.J. and Schmitz, A. (1978) Nucleic Acids Res., 3157-3170.
2. Schmitz, A. and Galas, D.J. (1982) in Methods in ENA and RNA Sequencing, Weismann, S. Ed. Plenun Press, New York.
3. Gale, E.F., Cundliffe, E., Reynolds, P.E., Richmond, M.H. and Waring, M.J. (1981) in The Molecular Basis of Antibiotic Action, pp. 258-401 Wiley, New York.
4. DAndrea, A.D. and Baseltine, W.A. (1978) Proc. Natl. Acad. Sci. USA 75, 3608-3612.
5. Takeshi ta, M., Grollman, A.P., Ohtsubo, E. and Ohtsiix, H. (1978) Proc. Natl. Acad. Sci. USA Jh, 5 983-5987.
6. Kross, J., Hamer, W.D., Becht, S.M. and Haseltine, W.A. (1982) Biochemistry 21, 4310-4318.
7. VSn Dyke, M.W., Bertzberg, R.P. and Dervan, P.B. (1982) Proc. Natl. Acad. Sci. USA 21, 5470-5474.
8. van Dyke, M.W. and Dervan, P.B. (1983) Cold Spring Harbor Syrtp, Quant. Biol. 41, 347.
9. van Dyke, M.W. and Dervan, P.B. (1983) Biochemistry 22., 23-73.
10. Hertzberg, R.P. and Dervan, P.B. (1982) J. Amer. Chem. Soc. 104. 313-315.
11. lane, M., Dabrcwiak, J.C. and Voumakis, J.N. (1983) Proc. Natl. Acad. Sci. USAM, 3260-3264.
12. Kaxam, A.H. and Gilbert, W. (1980) Methods Enzyncl. 15, 499-560.
13. Goldberg, I.H., Rabinowitz, M. and Reich, E. (1962) Proc. Natl. Acad. Sci. USAM, 2094-2101.
14. Muller, W. and Crothers, D.M. (1968) J. Mol. Biol. 25, 251-290.
15. Wells, R.D. and Larson, J.E. (1970) J. Mol. Biol. 319-342.
16. Sobell, H.M. (1973) Prog. Nucleic Acid Res. Mol. Biol. 11, 153-190.
17. Patel, D.J., Kozlowski, S.A., Rice, J.A., Broka, C. and Itakura, K. (1981) Proc. Natl. Acad. Sci. USA JZ& 7281-7 284.
18. Krugh, T.R. (1981) in Topics in Nucleic Acid Structure, Neidle, S., Ed. pp. 197-217, Macmillan, London.
19. Takusagawa, F., Dabrow, M., Neidle, S. and Berman, H.M. (1982) Nature (London) 22Ê, 466-469.
20. Behr, W., Honikel, K. and Hartmann, G. (1969) Eur. J. Biochan,82-92.
21. Kersten, H. and Kersten, W. (1974) Mol. Biol. Biochan. Biophys. 18. 86-96.
22. Luck, G., Treibel, H., Waring, M. and Zinmer, C. (1974) Nucleic Acids Res. i, 503-530.
23. Zinmer, C. (1975) Prog. Nucleic Acid Res. Mol. Biol. 15, 285-318.
24. Krylov, A.S., Grokhovsky, S.L., Zazedatelev, A.S., Zhuge, A.L., Qursky, G.V. and Gottikh, B.P. (1979) Nucleic Acids Res., 289-304.
25. Haseltine, W.A., Lindan, C.P., D'Andrea, A.D. and Johnsrud, L. (1980) Methods Qizymol. 51 235-248.
26. Taylor, J.S., Schultz, P.G., and Dervan, P.B. (1983) Tetrahedron Symposium in Print "Bioorganic Studies on Receptor Sites", in press.
27. Dervan, P.B. and Schultz, P.G. (1983) J. Bicmolecular Structure and Dynamics, in press.
28. Schultz, P.G., Thylor, J.S. and Dervan, P.B. (1982) J. Amer. Chem. Soc. 104. 6861-6863.
29. Lomonossoff, G.P., Butler, P.J.G. and KLug, A. (1981) J. Mol. Biol. 149, 745-760.