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Volumn 88, Issue 1-3, 1998, Pages 355-366

Approximation algorithms for multiple sequence alignment under a fixed evolutionary tree

Author keywords

Approximation algorithms; Computational biology; Evolutionary trees; Multiple sequence alignment

Indexed keywords


EID: 0013695811     PISSN: 0166218X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0166-218X(98)00079-1     Document Type: Article
Times cited : (13)

References (21)
  • 1
    • 0000773502 scopus 로고
    • Trees, stars, and multiple biological sequence alignment
    • S.F. Altschul, D. Lipman, Trees, stars, and multiple biological sequence alignment, SIAM J. Appl. Math. 49 (1) (1989) 197-209.
    • (1989) SIAM J. Appl. Math. , vol.49 , Issue.1 , pp. 197-209
    • Altschul, S.F.1    Lipman, D.2
  • 2
    • 85012526842 scopus 로고
    • Approximation algorithms for multiple sequence alignment
    • Proceedings of the 5th Symposium on Combinatorial Pattern Matching, Springer
    • V. Bafna, E.L. Lawler, P.A. Pevzner, Approximation algorithms for multiple sequence alignment, Proceedings of the 5th Symposium on Combinatorial Pattern Matching, Springer, Lecture Notes in Computer Science, vol. 807 (1994) pp. 43-53.
    • (1994) Lecture Notes in Computer Science , vol.807 , pp. 43-53
    • Bafna, V.1    Lawler, E.L.2    Pevzner, P.A.3
  • 3
    • 0000303438 scopus 로고
    • The multiple sequence alignment problem in biology
    • H. Carrillo, D. Lipman, The multiple sequence alignment problem in biology, SIAM J. Appl. Math. 48 (1988) 1073-1082.
    • (1988) SIAM J. Appl. Math. , vol.48 , pp. 1073-1082
    • Carrillo, H.1    Lipman, D.2
  • 4
    • 84959747425 scopus 로고
    • Towards defining the course of evolution: Minimum change for a specific tree topology
    • W.M. Fitch, Towards defining the course of evolution: minimum change for a specific tree topology, Systematic Zool. 20 (1971) 406-416.
    • (1971) Systematic Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 5
    • 0029366816 scopus 로고
    • Improving the practical space- and time-efficiency of the shortest-paths approach to sum-of-pairs multiple-sequence alignment
    • S. K. Gupta, J.D. Kececioglu, A.A. Schäffer, Improving the practical space- and time-efficiency of the shortest-paths approach to sum-of-pairs multiple-sequence alignment, J. Comput. Biol. 2 (3) (1995) 459-472.
    • (1995) J. Comput. Biol. , vol.2 , Issue.3 , pp. 459-472
    • Gupta, S.K.1    Kececioglu, J.D.2    Schäffer, A.A.3
  • 6
    • 0027351056 scopus 로고
    • Efficient methods for multiple sequence alignment with guaranteed error bounds
    • D. Gusfield, Efficient methods for multiple sequence alignment with guaranteed error bounds, Bull. Math. Biol. 55 (1993) 141-154.
    • (1993) Bull. Math. Biol. , vol.55 , pp. 141-154
    • Gusfield, D.1
  • 7
    • 0038984426 scopus 로고    scopus 로고
    • Technical Report 96-4, Department of Computer Science, University of California, Davis, January
    • D. Gusfield, L. Wang, New uses for uniform lifted alignments, Technical Report 96-4, Department of Computer Science, University of California, Davis, January 1996.
    • (1996) New Uses for Uniform Lifted Alignments
    • Gusfield, D.1    Wang, L.2
  • 8
    • 0002329356 scopus 로고
    • Minimum mutation fits to a given tree
    • J.A. Hartigan, Minimum mutation fits to a given tree, Biometrics 29 (1973) 53-65.
    • (1973) Biometrics , vol.29 , pp. 53-65
    • Hartigan, J.A.1
  • 9
    • 0024766957 scopus 로고
    • A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given
    • J. Hein, A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given, Mol. Biol. Evol. 6 (6) (1989) 649-668.
    • (1989) Mol. Biol. Evol. , vol.6 , Issue.6 , pp. 649-668
    • Hein, J.1
  • 10
    • 0025342577 scopus 로고
    • Unified approach to alignment and phylogenies
    • J. Hein, Unified approach to alignment and phylogenies, Meth. Enzymol. 188 (1990) 626-645.
    • (1990) Meth. Enzymol. , vol.188 , pp. 626-645
    • Hein, J.1
  • 11
    • 0039577059 scopus 로고    scopus 로고
    • Aligning sequences via an evolutionary tree: Complexity and approximation
    • T. Jiang, E.L. Lawler, L. Wang, Aligning sequences via an evolutionary tree: complexity and approximation, Algorithmics 16 (1996) 302-315.
    • (1996) Algorithmics , vol.16 , pp. 302-315
    • Jiang, T.1    Lawler, E.L.2    Wang, L.3
  • 12
    • 85010105210 scopus 로고
    • The maximum trace problem in multiple sequence alignment
    • Proceedings of the 4th Symposium on Combinatorial Pattern Matching, Springer
    • J. Kececioglu, The maximum trace problem in multiple sequence alignment, Proceedings of the 4th Symposium on Combinatorial Pattern Matching, Springer, Lecture Notes in Computer Science, vol. 684, 1993, pp. 106-119.
    • (1993) Lecture Notes in Computer Science , vol.684 , pp. 106-119
    • Kececioglu, J.1
  • 13
    • 0027097378 scopus 로고
    • Multiple alignment, communication cost, and graph matching
    • P.A. Pevzner, Multiple alignment, communication cost, and graph matching. SIAM J. Appl. Math. 52 (6) (1992) 1763-1779.
    • (1992) SIAM J. Appl. Math. , vol.52 , Issue.6 , pp. 1763-1779
    • Pevzner, P.A.1
  • 14
    • 84948977657 scopus 로고
    • Approximation algorithms for multiple sequence alignment under a fixed evolutionary tree
    • Proceedings of the 5th Symposium on Combinatorial Pattern Matching, Springer
    • R. Ravi, J.D. Kececioglu, Approximation algorithms for multiple sequence alignment under a fixed evolutionary tree, Proceedings of the 5th Symposium on Combinatorial Pattern Matching, Springer, Lecture Notes in Computer Science, vol. 937, 1995, pp. 330-339.
    • (1995) Lecture Notes in Computer Science , vol.937 , pp. 330-339
    • Ravi, R.1    Kececioglu, J.D.2
  • 16
    • 0016424695 scopus 로고
    • Minimal mutation trees of sequences
    • D. Sankoff, Minimal mutation trees of sequences, SIAM J. Appl. Math. 28 (1) (1975) 35-42.
    • (1975) SIAM J. Appl. Math. , vol.28 , Issue.1 , pp. 35-42
    • Sankoff, D.1
  • 18
    • 0017293845 scopus 로고
    • Frequency of insertion-deletion, transversion, and transition in the evolution of 5S ribosomal RNA
    • D. Sankoff, R. Cedergren, G. Laplame, Frequency of insertion-deletion, transversion, and transition in the evolution of 5S ribosomal RNA, J. Mol. Evol. 7 (1976) 133-149.
    • (1976) J. Mol. Evol. , vol.7 , pp. 133-149
    • Sankoff, D.1    Cedergren, R.2    Laplame, G.3
  • 20
    • 0028679709 scopus 로고
    • On the complexity of multiple sequence alignment
    • L. Wang, T. Jiang, On the complexity of multiple sequence alignment, J. Comp. Biol. 1, 337-348, 1994.
    • (1994) J. Comp. Biol. , vol.1 , pp. 337-348
    • Wang, L.1    Jiang, T.2
  • 21
    • 0000220975 scopus 로고
    • Line geometries for sequence comparisons
    • M.S. Waterman, M.D. Perlwitz, Line geometries for sequence comparisons, Bull. Math. Biol. 46 (4) (1984) 567-577.
    • (1984) Bull. Math. Biol. , vol.46 , Issue.4 , pp. 567-577
    • Waterman, M.S.1    Perlwitz, M.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.