Fluorescence spectral properties of cyanine dye-labeled DNA oligomers on surfaces coated with silver particles

Analytical Biochemistry

Volumn 317, Issue 2, 2003, Pages 136-146

  Malicka, Joanna ^a   Gryczynski, Ignacy ^a   Fang, Jiyu ^b   Lakowicz, Joseph R ^a  

^a UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

^b NAVAL RESEARCH LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FLUORESCENCE; OLIGOMERS; SILVER;

EMISSION INTENSITY; FLUORESCENCE INTENSITIES; INTEGRATED INTENSITIES; METALLIC SILVER; PHOTO-STABILITY; RADIATIVE DECAY RATES; SILVER PARTICLES; SPECTRAL PROPERTIES;

DNA;

3 AMINOPROPYLTRIETHOXYSILANE; AVIDIN; CYANINE DYE; DNA; OLIGOMER; POLYLYSINE; SILANE DERIVATIVE; SILICON DIOXIDE; SILVER;

AREA UNDER THE CURVE; ARTICLE; BIOTINYLATION; CHEMICAL LABELING; DNA BINDING; DNA DETERMINATION; DNA MICROARRAY; ILLUMINATION; MATERIAL COATING; PRIORITY JOURNAL; PROTEIN STABILITY; SPECTROFLUOROMETRY;

EID: 0012625589     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0003-2697(03)00005-8     Document Type: Article

References (19)

1. Lipschutz R.J., Fodor S.P.A., Gineras T.R., Lockhart D.J. High density synthetic oligonucleotide arrays. Nat. Genet. Suppl. 1(1):1999;20-24.
2. Brown P.O., Botstein D. Exploring the new world of the genome with DNA microarrays. Nat. Genet. Suppl. 21:1999;33-37.
3. Schena M., Heller R.A., Theriault T.P., Konrad K., Lachenmeier E., Davis R.W. Microarrays: Biotechnology's discovery platform for functional genomics. Trends Biotechnol. 16:1998;301-306.
4. Deyholos M.K., Galbraith D.W. High-density microarrays for gene expression analysis. Cytometry. 43:2001;229-238.
5. Harrington C.A., Rosenow C., Retief J. Monitoring gene expression using DNA microarrays. Curr. Opin. Microbiol. 3:2000;285-291.
6. Schmidt Th., Schütz G.J., Baumgartner W., Gruber H.J., Schindler H. Characterization of photophysics and mobility of single molecules in a fluid lipid membrane. J. Phys. Chem. 99:1995;17662-17668.
7. Soper S.A., Nutter H.L., Keller R.A., Davis L.M., Shera E.B. The photophysical constants of several fluorescent dyes pertaining to ultrasensitive fluorescence spectroscopy. Photochem. Photobiol. 57(6):1993;972-977.
8. Ambrose W.P., Goodwin P.M., Jett J.H., Van Orden A., Werner J.H., Keller R.A. Single molecule fluorescence spectroscopy at ambient temperature. Chem. Rev. 99:1999;2929-2956.
9. Lakowicz J.R. Radiative decay engineering: Biophysical and biomedical applications. Anal. Biochem. 298:2001;1-24.
10. Lakowicz J.R., Shen Y., D'Auria S., Malicka J., Gryczynski Z., Gryczynski I. Radiative decay engineering 2: Effects of silver island films on fluorescence intensity, lifetimes and resonance energy transfer. Anal. Biochem. 301:2002;261-277.
11. Sabanayagam C.R., Smith C.L., Cantor C.R. Oligonucleotide immobilization on micropatterned streptavidin surfaces. Nucleic Acids Res. 28(8):2000;e33.
12. Ni F., Cotton T.M. Chemical procedure for preparing surface-enhanced Raman scattering active silver films. Anal. Chem. 58:1986;3159-3163.
13. Stricker S.J., Berg R.A. Relationship between absorption intensity and fluorescence lifetime of molecules. J. Chem. Phys. 37:1962;814-822.
14. Metiu H. Surface enhanced spectroscopy. Prof. Surface Sci. 17:1984;153-320.
15. Gersten J., Nitzan A. Spectroscopic properties of molecules interacting with small dielectric particles. J. Chem. Phys. 75(3):1981;1139-1152.
16. Kümmerlen J., Leitner A., Brunner H., Aussenegg F.R., Wokaun A. Enhanced dye fluorescence over silver island films: analysis of the distance dependence. Mol. Phys. 80(5):1993;1031-1046.
17. Laczko G., Gryczynski I., Gryczynski Z., Wiczk W., Malak H., Lakowicz J.R. A 10-GHz frequency-domain fluorometer. Rev. Sci. Instrum. 61:1990;2331-2337.
18. Lakowicz J.R., Laczko G., Cherek H., Gratton E., Limkeman M. Analysis of fluorescence decay kinetics from variable-frequency phase shift and modulation data. Biophys. J. 46:1994;463-477.
19. Lakowicz J.R. Principles of Fluorescence Spectroscopy. second ed. 1999;Kluwer Academic/Plenum Press, New York.