-
1
-
-
85182711091
-
-
Ensembl Analysis Pipeline. [http://www.ensembl.org/Docs/wiki/html/EnsemblDocs/Pipeline.html]
-
Ensembl Analysis Pipeline
-
-
-
3
-
-
0036079158
-
The Human Genome Browser at UCSC
-
PID: 12045153, COI: 1:CAS:528:DC%2BD38Xks12hs7s%3D
-
Kent JW, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D: The Human Genome Browser at UCSC. Genome Res. 2002, 12: 996-1006. 10.1101/gr.229102. Article published online before print in May 2002. DOI: 10.1101/gr.229102. Article published online before print in May 2002
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, J.W.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
4
-
-
2942547885
-
The Distributed Annotation System
-
PID: 11667947, COI: 1:STN:280:DC%2BD3srgsF2msg%3D%3D
-
Dowell RD, Jokerst RM, Day A, Eddy SR, Stein L: The Distributed Annotation System. BMC Bioinformatics. 2001, 2: 7-10.1186/1471-2105-2-7. DOI: 10.1186/1471-2105-2-7
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 7
-
-
Dowell, R.D.1
Jokerst, R.M.2
Day, A.3
Eddy, S.R.4
Stein, L.5
-
7
-
-
0036081052
-
The FlyBase database of the Drosophilagenome projects and community literature
-
FlyBase Consortium: The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res. 2002, 30: 106-108. 10.1093/nar/30.1.106. DOI: 10.1093/nar/30.1.106
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 106-108
-
-
FlyBase, C.1
-
8
-
-
0002636459
-
Annotation of the Drosophila melanogastereuchromatic genome: a systematic review
-
research0083.1
-
Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, et al: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biol. 2002, 3: research0083.1-0083.22. 10.1186/gb-2002-3-12-research0083. DOI: 10.1186/gb-2002-3-12-research0083
-
(2002)
Genome Biol
, vol.3
-
-
Misra, S.1
Crosby, M.A.2
Mungall, C.J.3
Matthews, B.B.4
Campbell, K.S.5
Hradecky, P.6
Huang, Y.7
Kaminker, J.S.8
Millburn, G.H.9
Prochnik, S.E.10
-
9
-
-
0012306021
-
Apollo: A sequence annotation editor
-
research0082.1
-
Lewis SE, Searle SMJ, Harris NL, Gibson M, Iyer VR, Richter J, Wiel C, Bayraktaroglu L, Birney E, Crosby MA, et al: Apollo: A sequence annotation editor. Genome Biol. 2002, 3: research0082.1-0082.14. 10.1186/gb-2002-3-12-research0082. DOI: 10.1186/gb-2002-3-12-research0082
-
(2002)
Genome Biol
, vol.3
-
-
Lewis, S.E.1
Searle, S.M.J.2
Harris, N.L.3
Gibson, M.4
Iyer, V.R.5
Richter, J.6
Wiel, C.7
Bayraktaroglu, L.8
Birney, E.9
Crosby, M.A.10
-
10
-
-
0012340085
-
Finishing a whole-genome shotgun: Release 3 of the Drosophilaeuchromatic genome sequence
-
research0079.1
-
Celniker SE, Wheeler DA, Kronmiller B, Carlson JW, Halpern A, Patel S, Adams M, Champe M, Dugan SP, Frise E, et al: Finishing a whole-genome shotgun: Release 3 of the Drosophila euchromatic genome sequence. Genome Biol. 2002, 3: research0079.1-0079.14. 10.1186/gb-2002-3-12-research0079. DOI: 10.1186/gb-2002-3-12-research0079
-
(2002)
Genome Biol
, vol.3
-
-
Celniker, S.E.1
Wheeler, D.A.2
Kronmiller, B.3
Carlson, J.W.4
Halpern, A.5
Patel, S.6
Adams, M.7
Champe, M.8
Dugan, S.P.9
Frise, E.10
-
11
-
-
0030805009
-
GenBank
-
PID: 9399790, COI: 1:CAS:528:DyaK1cXovVWlug%3D%3D
-
Benson DA, Boguski MS, Lipman DJ, Ostell J, Ouellette BF: GenBank. Nucleic Acids Res. 1998, 26: 1-7. 10.1093/nar/26.1.1. DOI: 10.1093/nar/26.1.1
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1-7
-
-
Benson, D.A.1
Boguski, M.S.2
Lipman, D.J.3
Ostell, J.4
Ouellette, B.F.5
-
12
-
-
0030792657
-
The EMBL nucleotide sequence database
-
PID: 9016493, COI: 1:CAS:528:DyaK2sXpvVGiuw%3D%3D
-
Stoesser G, Sterk P, Tuli MA, Stoehr PJ, Cameron GN: The EMBL nucleotide sequence database. Nucleic Acids Res. 1997, 25: 7-14. 10.1093/nar/25.1.7. DOI: 10.1093/nar/25.1.7
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 7-14
-
-
Stoesser, G.1
Sterk, P.2
Tuli, M.A.3
Stoehr, P.J.4
Cameron, G.N.5
-
13
-
-
0036081078
-
DNA Data Bank of Japan (DDBJ) for genome-scale research in life science
-
PID: 11752245, COI: 1:CAS:528:DC%2BD38Xht12ksbs%3D
-
Tateno Y, Imanishi T, Miyazaki S, Fukami-Kobayashi K, Saitou N, Sugawara H, Gojobori T: DNA Data Bank of Japan (DDBJ) for genome-scale research in life science. Nucleic Acids Res. 2002, 30: 27-30. 10.1093/nar/30.1.27. DOI: 10.1093/nar/30.1.27
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 27-30
-
-
Tateno, Y.1
Imanishi, T.2
Miyazaki, S.3
Fukami-Kobayashi, K.4
Saitou, N.5
Sugawara, H.6
Gojobori, T.7
-
14
-
-
85182631840
-
-
MySQL. [http://www.mysql.com/]
-
Mysql.
-
-
-
18
-
-
0031732094
-
A computer program for aligning a cDNA sequence with a genomic DNA sequence
-
PID: 9750195, COI: 1:CAS:528:DyaK1cXmsVWnt74%3D
-
Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W: A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res. 1998, 8: 967-974.
-
(1998)
Genome Res
, vol.8
, pp. 967-974
-
-
Florea, L.1
Hartzell, G.2
Zhang, Z.3
Rubin, G.M.4
Miller, W.5
-
19
-
-
17344374428
-
Full-length messenger RNA sequences greatly improve genome annotation
-
research0029.1
-
Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL: Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol. 2002, 3: research0029.1-0029.12. 10.1186/gb-2002-3-6-research0029. DOI: 10.1186/gb-2002-3-6-research0029
-
(2002)
Genome Biol
, vol.3
-
-
Haas, B.J.1
Volfovsky, N.2
Town, C.D.3
Troukhan, M.4
Alexandrov, N.5
Feldmann, K.A.6
Flavell, R.B.7
White, O.8
Salzberg, S.L.9
-
20
-
-
0025183708
-
Basic local alignment search tool
-
PID: 2231712, COI: 1:CAS:528:DyaK3MXitVGmsA%3D%3D
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol. 1990, 215: 403-410. 10.1006/jmbi.1990.9999. DOI: 10.1016/S0022-2836(05)80360-2
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
22
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
PID: 10731132
-
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF: The genome sequence of Drosophila melanogaster. Science. 2000, 287: 2185-2195. 10.1126/science.287.5461.2185. DOI: 10.1126/science.287.5461.2185
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
-
23
-
-
0012306020
-
A Drosophilafull-length cDNA resource
-
research0080.1
-
Stapleton M, Carlson J, Brokstein P, Yu C, Champe M, George R, Guarin H, Kronmiller B, Pacleb J, Park S, et al: A Drosophila full-length cDNA resource. Genome Biol. 2002, 3: research0080.1-0080.8. 10.1186/gb-2002-3-12-research0080. DOI: 10.1186/gb-2002-3-12-research0080
-
(2002)
Genome Biol
, vol.3
-
-
Stapleton, M.1
Carlson, J.2
Brokstein, P.3
Yu, C.4
Champe, M.5
George, R.6
Guarin, H.7
Kronmiller, B.8
Pacleb, J.9
Park, S.10
-
26
-
-
85182676106
-
-
Linux networX. [http://www.linuxnetworx.com]
-
Linux Networx
-
-
-
27
-
-
85182652170
-
Bioperl: standard Perl modules for bioinformatics
-
Chervitz SA, Fuellen G, Dagdigian C, Brenner SE, Birney E, Korf I: Bioperl: standard Perl modules for bioinformatics. Objects in Bioinformatics Conference. 1998, [http://www.bitsjournal.com/bioperl.html]
-
(1998)
Objects in Bioinformatics Conference
-
-
Chervitz, S.A.1
Fuellen, G.2
Dagdigian, C.3
Brenner, S.E.4
Birney, E.5
Korf, I.6
-
28
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
PID: 12368254, COI: 1:CAS:528:DC%2BD38XotVKgtbY%3D
-
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JGR, Korf I, Lapp H, et al: The Bioperl toolkit: Perl modules for the life sciences. Genome Res. 2002, 12: 1611-1618. 10.1101/gr.361602. DOI: 10.1101/gr.361602
-
(2002)
Genome Res
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
Dagdigian, C.6
Fuellen, G.7
Gilbert, J.G.R.8
Korf, I.9
Lapp, H.10
-
29
-
-
85182713001
-
-
bioperl.org. [http://bioperl.org/]
-
-
-
-
30
-
-
0034069495
-
Gene Ontology: tool for the unification of biology
-
The Gene Ontology Consortium: Gene Ontology: tool for the unification of biology. Nature Genet. 2000, 25: 25-29. 10.1038/75556. DOI: 10.1038/75556
-
(2000)
Nature Genet
, vol.25
, pp. 25-29
-
-
-
31
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
PID: 10592178, COI: 1:CAS:528:DC%2BD3cXhvVGqu7s%3D
-
Bairoch A, Apweiler R: The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 2000, 28: 45-48. 10.1093/nar/28.1.45. DOI: 10.1093/nar/28.1.45
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
32
-
-
0034800374
-
InterProScan - an integration platform for the signature-recognition methods in InterPro
-
PID: 11590104, COI: 1:CAS:528:DC%2BD3MXotFehsro%3D
-
Zdobnov EM, Apweiler R: InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics. 2001, 17: 847-848. 10.1093/bioinformatics/17.9.847. DOI: 10.1093/bioinformatics/17.9.847
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
34
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
PID: 7984417
-
Higgins D, Thompson J, Gibson T, Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22: 4673-4680. 10.1093/nar/22.22.4673. DOI: 10.1093/nar/22.22.4673
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Higgins, D.1
Thompson, J.2
Gibson, T.3
Thompson, J.D.4
Higgins, D.G.5
Gibson, T.J.6
-
35
-
-
85182672553
-
-
EMBOSS: showalign. [http://www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/showalign.html]
-
EMBOSS: Showalign.
-
-
-
36
-
-
0035940514
-
Genome-wide analysis of the Drosophilaimmune response by using oligonucleotide microarrays
-
PID: 11606746, COI: 1:CAS:528:DC%2BD3MXotFaiuro%3D
-
De Gregorio E, Spellman PT, Rubin GM, Lemaitre B: Genome-wide analysis of the Drosophila immune response by using oligonucleotide microarrays. Proc Natl Acad Sci USA. 2001, 98: 12590-12595. 10.1073/pnas.221458698. DOI: 10.1073/pnas.221458698
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 12590-12595
-
-
De Gregorio, E.1
Spellman, P.T.2
Rubin, G.M.3
Lemaitre, B.4
-
37
-
-
18644378331
-
The generic genome browser: a building block for a model organism system database
-
PID: 12368253, COI: 1:CAS:528:DC%2BD38XotVKgtbk%3D
-
Stein LD, Mungall CJ, Shu S-Q, Caudy M, Mangone M, Day A, Nickerson E, Stajich J, Harris TW, Arva A, Lewis S: The generic genome browser: a building block for a model organism system database. Genome Res. 2002, 12: 1599-1610. 10.1101/gr.403602. DOI: 10.1101/gr.403602
-
(2002)
Genome Res
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.J.2
Shu, S.-Q.3
Caudy, M.4
Mangone, M.5
Day, A.6
Nickerson, E.7
Stajich, J.8
Harris, T.W.9
Arva, A.10
Lewis, S.11
-
39
-
-
0036235138
-
Trans-splicing as a novel mechanism to explain interallelic complementation in Drosophila
-
PID: 11973303, COI: 1:CAS:528:DC%2BD38XktFahsb4%3D
-
Mongelard F, Labrador M, Baxter EM, Gerasimova TI, Corces VG: Trans-splicing as a novel mechanism to explain interallelic complementation in Drosophila. Genetics. 2002, 160: 1481-1487.
-
(2002)
Genetics
, vol.160
, pp. 1481-1487
-
-
Mongelard, F.1
Labrador, M.2
Baxter, E.M.3
Gerasimova, T.I.4
Corces, V.G.5
-
40
-
-
0002721912
-
Heterochromatic sequences in a Drosophilawhole-genome shotgun assembly
-
research0085.1
-
Hoskins RA, Smith CD, Carlson JW, Carvalho AB, Halpern A, Kaminker JS, Kennedy C, Mungall CJ, Sullivan BA, Sutton GG, et al: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Genome Biol. 2002, 3: research0085.1-0085.16. 10.1186/gb-2002-3-12-research0085. DOI: 10.1186/gb-2002-3-12-research0085
-
(2002)
Genome Biol
, vol.3
-
-
Hoskins, R.A.1
Smith, C.D.2
Carlson, J.W.3
Carvalho, A.B.4
Halpern, A.5
Kaminker, J.S.6
Kennedy, C.7
Mungall, C.J.8
Sullivan, B.A.9
Sutton, G.G.10
-
42
-
-
0034022596
-
Genie - gene finding in Drosophila melanogaster
-
PID: 10779493, COI: 1:CAS:528:DC%2BD3cXjtVKrsL4%3D
-
Reese MG, Kulp D, Tammana H, Haussler D: Genie - gene finding in Drosophila melanogaster. Genome Res. 2000, 10: 529-538. 10.1101/gr.10.4.529. DOI: 10.1101/gr.10.4.529
-
(2000)
Genome Res
, vol.10
, pp. 529-538
-
-
Reese, M.G.1
Kulp, D.2
Tammana, H.3
Haussler, D.4
-
43
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
PID: 9149143, COI: 1:CAS:528:DyaK2sXjtlSqtL4%3D
-
Burge C, Karlin S: Prediction of complete gene structures in human genomic DNA. J Mol Biol. 1997, 268: 78-94. 10.1006/jmbi.1997.0951. DOI: 10.1006/jmbi.1997.0951
-
(1997)
J Mol Biol
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
44
-
-
0030854739
-
tRNAscan-se: a program for improved detection of transfer RNA genes in genomic sequence
-
PID: 9023104, COI: 1:CAS:528:DyaK2sXhvVahtrk%3D
-
Lowe TM, Eddy SR: tRNAscan-se: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997, 25: 955-964. 10.1093/nar/25.5.955. DOI: 10.1093/nar/25.5.0955
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
45
-
-
0012253746
-
Computational analysis of core promoters in the Drosophilagenome
-
research0087.1
-
Ohler U, Liao G-C, Niemann H, Rubin GM: Computational analysis of core promoters in the Drosophila genome. Genome Biol. 2002, 3: research0087.1-0087.12. 10.1186/gb-2002-3-12-research0087. DOI: 10.1186/gb-2002-3-12-research0087
-
(2002)
Genome Biol
, vol.3
-
-
Ohler, U.1
Liao, G.-C.2
Niemann, H.3
Rubin, G.M.4
-
46
-
-
0012341115
-
The transposable elements of the Drosophila melanogastereuchromatin - a genomics perspective
-
research0084.1
-
Kaminker JS, Bergman C, Kronmiller B, Carlson J, Svirskas R, Patel S, Frise E, Wheeler DL, Lewis SE, Rubin GM, et al: The transposable elements of the Drosophila melanogaster euchromatin - a genomics perspective. Genome Biol. 2002, 3: research0084.1-0084.20. 10.1186/gb-2002-3-12-research0084. DOI: 10.1186/gb-2002-3-12-research0084
-
(2002)
Genome Biol
, vol.3
-
-
Kaminker, J.S.1
Bergman, C.2
Kronmiller, B.3
Carlson, J.4
Svirskas, R.5
Patel, S.6
Frise, E.7
Wheeler, D.L.8
Lewis, S.E.9
Rubin, G.M.10
-
47
-
-
85182676375
-
-
Mus musculus UniGene. [http://www.ncbi.nlm.nih.gov/UniGene/query.cgi?ORG=Mm]
-
Mus Musculus Unigene
-
-
|