STF1 is a novel TGACG-binding factor with a zinc-finger motif and a bZIP domain which heterodimerizes with GBF proteins

Plant Journal

Volumn 15, Issue 2, 1998, Pages 199-209

  Cheong, Yong Hwa ^a   Yoo, Cheol Min ^a   Park, Jeong Mee ^a   Ryu, Gyeong Ryeol ^a   Goekjian, Virginia H ^b   Nagao, Ron T ^b   Key, Joe L ^b   Cho, Moo Je ^a   Hong, Jong Chan ^a  

^a Gyeongsang National University   (South Korea)

^b UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; CDNA LIBRARY; DNA BINDING MOTIF; DNA BINDING; HETERODIMER; IDENTIFICATION; PLANT DEVELOPMENT; PLANT GROWTH; PROTEIN; SEQUENCE ANALYSIS; SOYBEAN; TRANSCRIPTION FACTOR;

AMINO ACID SEQUENCE; BASE SEQUENCE; BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTORS; BINDING SITES; DIMERIZATION; DNA, COMPLEMENTARY; DNA-BINDING PROTEINS; G-BOX BINDING FACTORS; GENE LIBRARY; LEUCINE ZIPPERS; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SOYBEAN PROTEINS; SOYBEANS; TRANSCRIPTION FACTORS; ZINC FINGERS;

ARABIDOPSIS; EMBRYOPHYTA; GLYCINE MAX;

EID: 0011382109     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1998.00197.x     Document Type: Article

References (65)

1. Ang, L.-H., Chattopadhyay, S., Wei, N., Oyama, T., Okada, K., Batschauer, A. and Deng, X.-W. (1998) Molecular interaction between COP 1 and HY 5 defines a regulatory switch for light control of Arabidopsis development. Mol. Cell, 1, 213-222.
2. Arioli, T., Peng, L., Betzner, A.S. et al. (1998) Molecular analysis of cellulose biosynthesis in Arabidopsis. Science, 279, 717-720.
3. Armstrong, G.A., Weisshaar, B. and Hahlbrock, K. (1992) Homodimeric and heterodimeric leucine zipper proteins and nuclear factors from parsley recognize diverse promoter elements with ACGT cores. Plant Cell, 4, 525-537.
4. Benfey, P.N. and Chua, N.-H. (1990) The cauliflower mosaic virus 35S promoter: combinatorial regulation of transcription in plants. Science, 250, 1104-1110.
5. Bouchez, D., Tokuhisa, J.G., Llewellyn, D.J., Dennis, E.S. and Ellis, J.G. (1989) The ocs-element is a component of the promoters of several T-DNA and plant viral genes. EMBO J. 8, 4197-4204.
6. Bradford, M.M, (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254.
7. Cheong, Y.H., Park, J.M., Yoo, C.M., Bahk, J.D., Cho, M.J. and Hong, J.C. (1994) Isolation and characterization of STGA1, a member of the TGA1 family of bZIP transcription factors from soybean. Mol. Cells, 4, 405-412.
8. de Pater, S., Katagiri, F., Kijne, J. and Chua, N.-H. (1994) bZIP proteins bind to a palindromic sequence without an ACGT core located in a seed-specific element of the pea lectin promoter. Plant J. 6, 133-140.
9. Deng, X.-W., Matsui, M., Wei, N., Wagner, D., Chu, A.M., Feldmann, K.A. and Quail, P.H. (1992). COP1, an Arabidopsis regulatory gene encodes a protein with both a zinc-binding motif and a G homologous domain. Cell, 71, 791-801.
10. Driscoll, D.M. and Williams, J.G. (1987) Two divergently transcribed genes of Dictyostelium discoideum are cyclic AMPinducible and coregulated during development. Mol. Cell. Biol. 7, 4482-4489.
11. Ellenberger, T. (1994) Getting a grip on DNA recognition: structures of the basic region leucine zipper, and the basic region helixloop-helix DNA-binding domains. Curr. Opin. Struct. Biol. 4, 12-21
12. Feltkamp, D., Masterson, R., Starke, J. and Rosahl, S. (1994) Analysis of the involvement of ocs-like bZip-binding elements in the differential strength of the bidirectional masl'2' promoter. Plant Physiol. 105, 259-268.
13. Foley, R.C., Grossman, C., Ellis, J.G., Llewellyn, D.J., Dennis, E.S., Peacock, W.J. and Singh, K.B. (1993) Isolation of a maize bZIP protein subfamily: Candidates for the ocs-element transcription factor. Plant J. 3, 669-679
14. Foster, R, Izawa, T. and Chua, N.-H. (1994) Plant bZIP proteins gather at ACGT elements. FASEB J. 8. 192-200.
15. Freemont, P.S., Hanson, I.M. and Trowsdale, J. (1991) A novel cystein-rich sequence motif. Cell, 64, 483-484.
16. Giuliano, G., Pichersky, E., Malik, V.S., Timko, M.P., Scolnik, P.A. and Cashmore, A.R. (1988) An evolutionary conserved protein binding sequence upstream of a plant light-regulated gene. Proc. Natl Acad. Sci. USA, 85, 7089-7093.
17. Gonzalez, G.A., Yamamoto, K.K., Fischer, W.H., Karr, D., Menzel, P., Biggs, W., Vale, W.W. and Montminy, M.R. (1989) A cluster of phosphorylation sites on the cyclic AMP-regulated nuclear factor CREB predicted by its sequence. Nature, 337, 749-752.
18. Guiltinan, M.J., Marcotte, W. Jr and Quatrano, R.S. (1990) A plant leucine zipper protein that recognizes an abscisic acid response element. Science, 250, 267-271.
19. Hanson, I.M., Poustka, A. and Trowsdale, J. (1991) New genes in the class II region of the human major histocompatibility complex. Genomics, 10, 417-424.
20. Hong, J.C., Cheong, Y.H., Nagao, R.T., Bank, J.D., Key, J.L and Cho, M.J. (1995) Isolation of two soybean G-box binding factors which interact with a G-box sequence of an auxin-responsive gene. Plant J. 8, 199-211.
21. Hong, U.C., Nagao, R.T. and Key, J.L. (1987) Characterization and sequence analysis of a developmentally regulated putative cell wall protein gene isolated from soybean. J. Biol. Chem. 262, 8367-8376.
22. Hope, I.A. and Struhl, K. (1986) Functional dissection of a eukaryotic transcriptional activator protein, GCN4 of yeast. Cell, 46, 885-894.
23. Izawa, T., Foster, R. and Chua, N.-H. (1993) Plant bZIP protein DMA binding specificity. J. Mol. Biol. 230, 1131-1144.
24. Izawa, T., Foster, R., Nakajima, M., Shimamoto, K. and Chua, N.-H. (1994) The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development. Plant Cell, 6, 1277-1287.
25. Jones, J.S., Weber, S. and Prakash, L. (1988) The Saccharomyces cerivisiae RAD18 gene encodes a protein that contains potential zinc finger domains for nucleic acid binding and a putative nucleotide binding sequence. Nucl. Acids Res. 16, 7119-7131.
26. Katagiri, F., Lam, E. and Chua, N.-H. (1989) Two tobacco DNAbinding proteins with homology to the nuclear factor CREB. Nature, 340, 727-730.
27. Kim, J., Tzamarias, D., Ellenberger T., Harrison, S.C. and Struhl, K. (1993) Adaptability at the protein-DNA interface is an important aspect of sequence recognition by bZIP proteins. Proc. Natl Acad. Sci. USA, 90, 4513-4517.
28. Lam, E., Benfey, P.N., Gilmartin, P.M., Fang, R.-X. and Chua, N.-H. (1989) Site-specific mutations alter in vitro factor binding and change promoter expression pattern in transgenic plants. Proc. Natl Acad. Sci. USA, 86, 7890-7894.
29. Lam, E., Katagiri, F. and Chua, N.-H. (1990) Plant nuclear factor ASF-1 binds to an essential region of the nopaline synthase promoter. J. Biol. Chem. 265, 9909-9913.
30. Lamb, P. and McKnight, S.L. (1991) Diversity and specificity in transcriptional regulation: the benefits of heterotypic dimerization. Trends Biochem. Sci. 16, 417-422.
31. Landschulz, W.H., Johnson, P.P. and McKnight, S.L. (1988) The leucine zipper: a hypothetical structure common to a new class of DNA-bmding proteins. Science, 240, 1759-1764.
32. Lin, Y.-S. and Green, M.R. (1988) Interaction of a common cellular transcription factor, ATF, with regulatory elements in both E1aand cyclic AMP-inducible promoters. Proc. Natl Acid. Sei. USA, 85. 3396-3400.
33. Liu, Z.B., Hagen, G. and Guilfoyle, T.J. (1997) A G-box-binding protein from soybean binds to the E1 auxin-response element in the soybean GH3 promoter and contains a proline-rich repression domain. Plant Physiol. 115, 397-407.
34. Liu, Z.B., Ulmasov, T., Shi, X., Hagen, G. and Guilfoyle, T.J. (1994) Soybean GH3 promoter contains multiple auxin-inducible elements. Plant Cell, 6, 645-657.
35. Martinez-Garcia, J.F., Moyano, E., Alcocer, M.J.C. and Martin, C. (1998) Two bZIP protein from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new subfamily of bZIP transcription factors. Plant J. 13, 489-505.
36. McNellis, T.W., von Arnim, A.G. and Deng, X.-W. (1994) Overexpression of Arabidopsis COP1 results in partial suppression of light-mediated development: Evidence for a fight-inactivable represser of photomorphogenesis. Plant Cell, 6,1391-1400.
37. Meier, I. and Gruissem, W. (1994) Novel conserved sequence motifs in plant G-box binding proteins and implications for interactive domains. Nucl. Acids Res. 22, 470-478.
38. Menkens, A.E. and Cash more, A.R. (1994) Isolation and characterization of a fourth Arabidopsis thaliana G-box binding factor, which has similarities to Fos oncoprotein. Proc. Natl Acid. Sci. USA, 91, 2522-2526.
39. Menkens, A.E., Schindlet, U. and Cashmore, A.R. (1995) The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins. Trends Biochem. Sci. 20, 506-510.
40. Mikami, K., Sakamoto, A., Takase, H., Tabata, T. and Iwabuchi, M. (1989) Wheat nuclear protein HBP-1 binds to the hexameric sequence in the promoter of various plant genes. Nucl. Acids Res. 17, 9707-9717.
41. Mikami, K., Sakamoto, A. and Iwabuchi, M. (1994) The HBP-1 family of wheat basic/leucine zipper proteins interacts with overlapping c/s-acting hexamer motifs of plant histone genes. J. Biol. Chem. 13, 9974-9985.
42. Montminy, M.R., Gonzalez G.A. and Yamamoto, K.K. (1990) Regulation of cAMP-inducible genes by CREB. Trends Neurosci. 13, 184-188.
43. Nagao, R.T., Goekjian, V.H., Hong, J.C. and Key, J.L (1993) identification of protein-binding DNA sequences in an auxinregulated gene of soybean. Plant Mol. Biol. 21, 1147-1162.
44. Nakayama, T. and Iwabuchi, Wl. (1993) Regulation of wheat histone gene expression. Critical Rev. Plant Sei. 12, 97-110.
45. Nantel, A. and Ouatrano, R. (1996) Characterization of three rice basic/leucine zipper factors, including two inhibitors of EmBP-1 DNA binding activity. J. Biol. Chem. 271, 31296-31305.
46. Oeda, K., Salinas.J. and Chua, N.-H. (1991) A tobacco bZIP transcription activator (TAF-1) binds to a G-box-like motif conserved in plant genes. EMBO J. 10, 1793-1802.
47. Oliphant, A.R., Brandi, C.J. and Struhl, K. (1989) Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: analysis of yeast GCN4 protein. Mol. Cell Biol. 9. 2944-2949.
48. O'Shea, EX., Rutkowski, R. and Kirn, P.S. (1989) Evidence that the leucine zipper is a coiled-coil. Science, 243, 538-542.
49. Oyama, T., Shimura, Y. and Okada, K. (1997) The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl. Genes Dev. 11, 2983-2995.
50. Pear, J.R., Kawagoe, Y., Schreckengost, W.E., Delmer, O.P. and Stalker, D.M. (1996) Higher plants contain homologs of the bacterial celA genes encoding the catalytic subunit of cellulose synthase. Proc. Natl Acad. Sei. USA, 93,12637-12642.
51. Pearson, R.B. and Kemp, B.E. (1991) Proteinase phosphorylation site sequences and consensus specificity motifs: Tabulations. Methods Enzymol. 200, 62-81
52. Pysh, LD, Aukerman, M.J. and Schmidt, R.J. (1993) OHP1: a maize basic domain/leucine zipper protein that interacts with Opaque 2. Plant Cell, 5, 227-236.
53. Rasmussen, R., Benvegnu, D.r O'Shea, E.K., Kim, P.S. and Alber, T. (1991) X-ray scattering indicates that the leucine zipper is a coiled-coil. Proc. Natl Acid. Sci. USA, 88, 561-564.
54. Sanger, F., Ntcklen, S. and Coulson, A.R. (1977) DNA sequencing with chain-terminating inhibitors. Proc. Natl Acad. Sei. USA 74, 5463-5467.
55. Saurin, A.J., Borden, K.I.B., Boddy, M.N. and Freemont, P.S. (1996) Does this have a familiar RING? Trends Biochem. Sci. 21, 208-214.
56. Schatz, O.G., Oettinger, M.A. and Baltmore, D. (1989) The V(D)J recombination activating gene, RAG-1. Cell, 59, 1035-1048.
57. Schindler, U., Beckmann, H. and Cashmore, A.R. (1992) TGA1 and G-box binding factors: Two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG. Plant Cell, 4, 1309-1319.
58. Schmidt, R.J., Burr, F.A., Aukerman, M.J. and Burr, B. (1990) Maize regulatory gene opaque-2 encodes a protein with a leucinezipper' motif that binds to zein DNA. Proc. NatlAcad. Sci. USA, 87, 46-50.
59. Schulze-Lefert, P., Becker-Andre, M., Schulz, W., Hahlbrock, K. and Dangl, J.L. (1989) Functional architecture of the lightresponsive chalcone synthase promoter from parsley. Plant Cell, 1, 707-714.
60. Suckow, M., von Wilcken-Bergmann, B. and Muller-Hill, B. (1993) Identification of three residues in the basic regions of the bZIP proteins GCN4, C/EBP and TAF-1 that are involved in specific DNA binding. EMBOJ. 12, 1193-1200.
61. Tabata, T., Nakayama, T., Mikami, K. and Iwabuchi, M. (1991) HBP-1a and HBP-lb: leucine zipper-type transcription factors of wheat. EMBO J. 10,1459-1467.
62. Tranque, P., Crossin, K.L., Cirelli, C., Edelman, G.M. and Mauro, V.P. (1996) Identification and characterization of a RING zinc finger gene (C-RZF) expressed in chicken embryo cells. Proc. Natl Acad. Sci. USA, 93, 3105-3109.
63. Van Beveren, C., Van Straaten, F., Curran, T., Muller, R. and Verma, I.M. (1983) Analysis of FBJ-MuSV provirus and c-fos (mouse) gene reveals that viral and cellular fos gene products have different carboxy termini. Cell, 32, 1241-1255.
64. Vinson, C.R., Sigler, P.B. and McKnight, S.L. (1989) Scissors-grip mode! for DNA recognition by a family of leucine zipper proteins. Science,246, 911-916.
65. Weisshaar, B., Armstrong, G.A., Block, A., da Costa e Silva, O. and Hahlbrock, K. (1991) Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBOJ. 10, 1777-1786.