-
1
-
-
0025370815
-
Dominant Forces in Protein Folding
-
K. A. Dill, "Dominant Forces in Protein Folding", Biochemistry, 29, 7133 (1990).
-
(1990)
Biochemistry
, vol.29
, pp. 7133
-
-
Dill, K.A.1
-
2
-
-
0026567907
-
Response of a Protein Structure to Cavity-Creating Mutations and Its Relation to the Hydrophobic Effect
-
A. E. Eriksson, W. A. Baase, X. -J. Zhang, D. W. Heinz, M. Blaber, E. P. Baldwin and B. W. Matthews, "Response of a Protein Structure to Cavity-Creating Mutations and Its Relation to the Hydrophobic Effect", Science, 255, 178 (1992).
-
(1992)
Science
, vol.255
, pp. 178
-
-
Eriksson, A.E.1
Baase, W.A.2
Zhang, X.-J.3
Heinz, D.W.4
Blaber, M.5
Baldwin, E.P.6
Matthews, B.W.7
-
3
-
-
0025005525
-
Contributions of the Large Hydrophobic Amino Acids to the Stability of Staphylococcal Nuclease
-
D. Shortle, W. E. Stites and A. K. Meeker, "Contributions of the Large Hydrophobic Amino Acids to the Stability of Staphylococcal Nuclease", Biochemistry, 29, 8033 (1990).
-
(1990)
Biochemistry
, vol.29
, pp. 8033
-
-
Shortle, D.1
Stites, W.E.2
Meeker, A.K.3
-
4
-
-
0024295240
-
Contribution of hydrophobic interactions to protein stability
-
J. T. J. Kellis, K. Nyberg, D. Sali and A. R. Fersht, "Contribution of hydrophobic interactions to protein stability", Nature, 333, 784 (1988).
-
(1988)
Nature
, vol.333
, pp. 784
-
-
Kellis, J.T.J.1
Nyberg, K.2
Sali, D.3
Fersht, A.R.4
-
5
-
-
0024375463
-
Energetics of Complementary Side-Chain packing in a Protein Hydrophobic Core
-
J. T. J. Kellis, K. Nyberg and A. R. Fersht, "Energetics of Complementary Side-Chain packing in a Protein Hydrophobic Core", Biochemistry, 28, 4914 (1989).
-
(1989)
Biochemistry
, vol.28
, pp. 4914
-
-
Kellis, J.T.J.1
Nyberg, K.2
Fersht, A.R.3
-
7
-
-
0025822990
-
Structural and Thermodynamic Analysis of the Packing of Two α-Helices in Bacteriophage T4 Lysozyme
-
S. Dao-pin, T. Alber, W. A. Baase, J. A. Wozniak and B. W. Matthews, "Structural and Thermodynamic Analysis of the Packing of Two α-Helices in Bacteriophage T4 Lysozyme", J. Mol. Biol., 221, 647 (1991).
-
(1991)
J. Mol. Biol.
, vol.221
, pp. 647
-
-
Dao-pin, S.1
Alber, T.2
Baase, W.A.3
Wozniak, J.A.4
Matthews, B.W.5
-
8
-
-
0023741058
-
Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of He 3
-
M. Matsumura, W. J. Backtel and B. W. Matthews, "Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of He 3", Nature, 334, 406 (1988).
-
(1988)
Nature
, vol.334
, pp. 406
-
-
Matsumura, M.1
Backtel, W.J.2
Matthews, B.W.3
-
9
-
-
0024450809
-
Structural studies of mutants of T4 lysozyme that alter hydrophobic stabilization
-
M. Matsumura, J. A. Wozniak, S. Dao-pin and B. W. Matthews, "Structural studies of mutants of T4 lysozyme that alter hydrophobic stabilization", J. Biol. Chem., 264, 16059 (1989).
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 16059
-
-
Matsumura, M.1
Wozniak, J.A.2
Dao-pin, S.3
Matthews, B.W.4
-
10
-
-
0026532266
-
Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme
-
J. H. Hurley, W. A. Baase and B. W. Matthews, "Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme", J. Mol. Biol., 224, 1143 (1992).
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 1143
-
-
Hurley, J.H.1
Baase, W.A.2
Matthews, B.W.3
-
11
-
-
0023368698
-
Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase α-subunit
-
K. Yutani, K. Ogasahara, T. Tsujita and Y. Sugino, "Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase α-subunit", Proc. Natl. Acad. Sci. USA, 84, 4441 (1987).
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 4441
-
-
Yutani, K.1
Ogasahara, K.2
Tsujita, T.3
Sugino, Y.4
-
12
-
-
0025908265
-
The role of internal packing interactions in determining the structure and stability of a protein
-
W. A. Lim and R. T. Sauer, "The role of internal packing interactions in determining the structure and stability of a protein", J. Mol. Biol., 219, 359 (1991).
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 359
-
-
Lim, W.A.1
Sauer, R.T.2
-
13
-
-
0024400292
-
Influence of interior packing and hydrophobicity on the stability of a protein
-
W. S. Sandberg and T. C. Terwilliger, "Influence of interior packing and hydrophobicity on the stability of a protein", Science, 245, 54 (1989).
-
(1989)
Science
, vol.245
, pp. 54
-
-
Sandberg, W.S.1
Terwilliger, T.C.2
-
14
-
-
0039992989
-
Hydrophobic packing in T4 lysozyme probed by cavity-filling mutants
-
M. Karpusas, W. A. Baase, M. Matsumura and B. W. Matthews, "Hydrophobic packing in T4 lysozyme probed by cavity-filling mutants", Proc. Natl. Acad. Sci. USA, 86, 8237 (1989).
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 8237
-
-
Karpusas, M.1
Baase, W.A.2
Matsumura, M.3
Matthews, B.W.4
-
15
-
-
0026769080
-
The effect of cavity-filling mutations on the thermostability of Bacillus stearothermophilus neutral protease
-
V.G. H. Eijsink, B. W. Dijkstra, G. Vriend, J. R. van der Zee, O. R. Veltman, B. van der Vinne, B. van den Burg, S. Kempe and G. Venema, "The effect of cavity-filling mutations on the thermostability of Bacillus stearothermophilus neutral protease", Protein Eng., 5, 421 (1992).
-
(1992)
Protein Eng.
, vol.5
, pp. 421
-
-
Eijsink, V.G.H.1
Dijkstra, B.W.2
Vriend, G.3
Van Der Zee, J.R.4
Veltman, O.R.5
Van Der Vinne, B.6
Van Den Burg, B.7
Kempe, S.8
Venema, G.9
-
16
-
-
0027314187
-
Stabilization of Escherichia coli Ribonnuclease HI by Cavity-Filling Mutations within a Hydrophobic Core
-
K. Ishikawa, H. Nakamura, K. Morikawa and S. Kanaya, "Stabilization of Escherichia coli Ribonnuclease HI by Cavity-Filling Mutations within a Hydrophobic Core", Biochemistry, 32, 6171 (1993).
-
(1993)
Biochemistry
, vol.32
, pp. 6171
-
-
Ishikawa, K.1
Nakamura, H.2
Morikawa, K.3
Kanaya, S.4
-
17
-
-
0026554928
-
Structural Details of Ribonuclease H from Escherichia coli as Refined to an Atomic Resolution
-
K. Katayanagi, M. Miyazawa, M. Matsushima, M. Ishikawa, S. Kanaya, H. Nakamura, M. Ikehara, T. Matsuzaki and K. Morikawa, "Structural Details of Ribonuclease H from Escherichia coli as Refined to an Atomic Resolution," J. Mol. Biol., 223, 1029 (1992).
-
(1992)
J. Mol. Biol.
, vol.223
, pp. 1029
-
-
Katayanagi, K.1
Miyazawa, M.2
Matsushima, M.3
Ishikawa, M.4
Kanaya, S.5
Nakamura, H.6
Ikehara, M.7
Matsuzaki, T.8
Morikawa, K.9
-
18
-
-
1842455028
-
Free energy calculations on protein stability: The Thr157→ Ala157 mutation of T4 Lysozyme
-
edited by V. Renugopalakrishnam, P. R. Carey, I. C. P. Smith, S. G. Huang and A. C. Storer, ESCOM, Leiden
-
L. X. Dang and P. A. Kollman, "Free energy calculations on protein stability: The Thr157→ Ala157 mutation of T4 Lysozyme", "Proteins Structure, Dynamics and Design" edited by V. Renugopalakrishnam, P. R. Carey, I. C. P. Smith, S. G. Huang and A. C. Storer, ESCOM, Leiden (1991).
-
(1991)
Proteins Structure, Dynamics and Design
-
-
Dang, L.X.1
Kollman, P.A.2
-
19
-
-
0024442265
-
Free Energy Calculations on Protein Stability: Thr-157 → Val-157 Mutation of T4 Lysozyme
-
L. X. Dang, K. M. J. Merz and P. A. Kollman, "Free Energy Calculations on Protein Stability: Thr-157 → Val-157 Mutation of T4 Lysozyme", J. Am. Chem. Soc., 111, 8505 (1989).
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 8505
-
-
Dang, L.X.1
Merz, K.M.J.2
Kollman, P.A.3
-
20
-
-
0027191902
-
Can the stability of protein mutants be predicted by free energy calculations?
-
S. Yun-yu, A. E. Mark, W. Cun-xin, H. Fuhua, H. J. C. Berendsen and W. F. van Gunsteren, "Can the stability of protein mutants be predicted by free energy calculations?", Protein Engineering, 6, 289 (1993).
-
(1993)
Protein Engineering
, vol.6
, pp. 289
-
-
Yun-yu, S.1
Mark, A.E.2
Cun-xin, W.3
Fuhua, H.4
Berendsen, H.J.C.5
Van Gunsteren, W.F.6
-
21
-
-
0025732376
-
Simulation Analysis of the Stability Mutant R96H of T4 Lysozyme
-
B. Tidor and M. Karplus, "Simulation Analysis of the Stability Mutant R96H of T4 Lysozyme", Biochemistry, 30, 3217 (1991).
-
(1991)
Biochemistry
, vol.30
, pp. 3217
-
-
Tidor, B.1
Karplus, M.2
-
22
-
-
0026566303
-
The Role of Packing Interactions in Stabilizing Folded Proteins
-
S. F. Sneddon and D. J. Tobias, "The Role of Packing Interactions in Stabilizing Folded Proteins", Biochemistry, 31, 2842 (1992).
-
(1992)
Biochemistry
, vol.31
, pp. 2842
-
-
Sneddon, S.F.1
Tobias, D.J.2
-
23
-
-
0025787845
-
Contribution of the hydrophobic effect to protein stability: Analysis based on simulations of the Ile-96 → Ala mutation in barnase
-
M. Prevost, S. J. Wodak, B. Tidor and M. Karplus, "Contribution of the hydrophobic effect to protein stability: Analysis based on simulations of the Ile-96 → Ala mutation in barnase", Proc, Natl. Acad. Sci. USA, 88, 10880 (1991).
-
(1991)
Proc, Natl. Acad. Sci. USA
, vol.88
, pp. 10880
-
-
Prevost, M.1
Wodak, S.J.2
Tidor, B.3
Karplus, M.4
-
24
-
-
0027968902
-
Free Energy Simulations: The Meaning of the Individual Contributions from a Component Analysis
-
S. Boresch, G. Archontis and M. Karplus, "Free Energy Simulations: The Meaning of the Individual Contributions From a Component Analysis", PROTEINS: Structure, Function, and Genetics, 20, 25 (1994).
-
(1994)
PROTEINS: Structure, Function, and Genetics
, vol.20
, pp. 25
-
-
Boresch, S.1
Archontis, G.2
Karplus, M.3
-
25
-
-
0026556022
-
On the interpretation of biochemical data by molecular dynamics computer simulation
-
W. F. van Gunsteren and A. E. Mark, "On the interpretation of biochemical data by molecular dynamics computer simulation", Eur. J. Biochem., 204, 947 (1992).
-
(1992)
Eur. J. Biochem.
, vol.204
, pp. 947
-
-
Van Gunsteren, W.F.1
Mark, A.E.2
-
26
-
-
36449006641
-
Molecular dynamics simulations of proteins in solution: Artifacts caused by the cutoff approximation
-
M. Saito, "Molecular dynamics simulations of proteins in solution: Artifacts caused by the cutoff approximation", J. Chem. Phys., 101, 4055 (1994).
-
(1994)
J. Chem. Phys.
, vol.101
, pp. 4055
-
-
Saito, M.1
-
27
-
-
0342926714
-
Molecular Dynamics Simulations of Proteins in Water without the Truncation of Long-range Coulomb Interactions
-
M. Saito, "Molecular Dynamics Simulations of Proteins in Water without the Truncation of Long-range Coulomb Interactions", Molecular Simulation, 8, 321 (1992).
-
(1992)
Molecular Simulation
, vol.8
, pp. 321
-
-
Saito, M.1
-
28
-
-
0021757436
-
A New Force Field for Molecular Mechanical Simulation of Nucleic Acids and Proteins
-
S. J. Weiner, P. A. Kollman, D. A. Case, U. C. Singh, C. Ghio, G. Alagona, S. J. Profeta and P. Weiner, "A New Force Field for Molecular Mechanical Simulation of Nucleic Acids and Proteins"., J. Am. Chem. Soc., 106, 765 (1984).
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 765
-
-
Weiner, S.J.1
Kollman, P.A.2
Case, D.A.3
Singh, U.C.4
Ghio, C.5
Alagona, G.6
Profeta, S.J.7
Weiner, P.8
-
29
-
-
0002775934
-
Interaction models for water in relation to protein hydration
-
B. Pullman, ed., Reidel, Dordrecht
-
H. J. C. Berendsen, J. P. M. Postma, W. F. von Gunsteren and J. Hermans, "Interaction models for water in relation to protein hydration", in Intermolecular Forces, B. Pullman, ed., Reidel, Dordrecht, 1981, p. 331.
-
(1981)
Intermolecular Forces
, pp. 331
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Von Gunsteren, W.F.3
Hermans, J.4
-
30
-
-
0006865854
-
-
University of California, SanFrancisco, CA
-
G. Seibel, U. C. Singh, P. K. Weiner, J. Caldwell and P. A. Kollman, AMBER 3.0 Rev. A (University of California, SanFrancisco, CA) (1989).
-
(1989)
AMBER 3.0 Rev. a
-
-
Seibel, G.1
Singh, U.C.2
Weiner, P.K.3
Caldwell, J.4
Kollman, P.A.5
-
31
-
-
0001785627
-
Hydration Free Energy Calculations by the Acceptance Ratio Method
-
M. Saito and H. Nakamura, "Hydration Free Energy Calculations by the Acceptance Ratio Method", J. Comp. Chem., 11, 76 (1990).
-
(1990)
J. Comp. Chem.
, vol.11
, pp. 76
-
-
Saito, M.1
Nakamura, H.2
-
32
-
-
5244304444
-
Efficient Estimation of Free Energy Differences from Monte Carlo Data
-
C. H. Bennett, "Efficient Estimation of Free Energy Differences from Monte Carlo Data", J. Comp. Phys., 22, 245 (1976).
-
(1976)
J. Comp. Phys.
, vol.22
, pp. 245
-
-
Bennett, C.H.1
-
33
-
-
0026244229
-
MolScript, aprogramto produce both detailed and schematic polts of protein structures
-
P. Kraulis, "MolScript, aprogramto produce both detailed and schematic polts of protein structures,", J. Appl. Crystallogr., 24, 946 (1991).
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946
-
-
Kraulis, P.1
-
34
-
-
0003819814
-
;Relative melting temperatures of RNase HI mutant proteins from MD simulation / free energy calculations
-
M. Saito and R. Tanimura, "Relative melting temperatures of RNase HI mutant proteins from MD simulation / free energy calculations", Chem. Phys. Letters, 236, 156 (1995).
-
(1995)
Chem. Phys. Letters
, vol.236
, pp. 156
-
-
Saito, M.1
Tanimura, R.2
-
35
-
-
0040543046
-
When are free energy components meaningful?
-
P. E. Smith and W. F. van Gunsteren, "When are free energy components meaningful?", J. Phys. Chem., 98, 13735 (1994).
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 13735
-
-
Smith, P.E.1
Van Gunsteren, W.F.2
|