-
2
-
-
0003631341
-
-
NATO ASI Series, Kluwer Academic Publishers, Dordrecht
-
Computer Simulation in Chemical Physics, Allen, M. P. and Tildesley, D. J. eds., NATO ASI Series, Kluwer Academic Publishers, Dordrecht, 1993.
-
(1993)
Computer Simulation in Chemical Physics
-
-
Allen, M.P.1
Tildesley, D.J.2
-
3
-
-
0004302191
-
-
Morgan Kaufmann Publishers Inc., San Mateo, California
-
Hennessy, J. L. and Patterson, D. A. Computer Architecture a Quantitative Approach, Morgan Kaufmann Publishers Inc., San Mateo, California, 1990.
-
(1990)
Computer Architecture a Quantitative Approach
-
-
Hennessy, J.L.1
Patterson, D.A.2
-
6
-
-
0001692893
-
A flexible/ polarizable simple point charge water model
-
and references therein
-
Zhu, S.-B., Yao, S., Zhu, J.-B., Singh, S. and Robinson, G. W. (1991). "A flexible/ polarizable simple point charge water model", J. Phys. Chem., 95, 6211-6217 and references therein.
-
(1991)
J. Phys. Chem.
, vol.95
, pp. 6211-6217
-
-
Zhu, S.-B.1
Yao, S.2
Zhu, J.-B.3
Singh, S.4
Robinson, G.W.5
-
7
-
-
84947640036
-
Distributed multipole analysis. Methods and applications
-
Stone, A. J. and Alderton, M. (1985). "Distributed multipole analysis. Methods and applications", Mol. Phys., 56, 1047-1064.
-
(1985)
Mol. Phys.
, vol.56
, pp. 1047-1064
-
-
Stone, A.J.1
Alderton, M.2
-
8
-
-
84931507903
-
Ab initio calculation of force constants and equilibrium geometries in polyatomic molecules. I Theory
-
Pulay, P. (1969). "Ab initio calculation of force constants and equilibrium geometries in polyatomic molecules. I Theory", Mol. Phys., 17, 197-204.
-
(1969)
Mol. Phys.
, vol.17
, pp. 197-204
-
-
Pulay, P.1
-
9
-
-
85048704389
-
Analytical derivative methods in quantum chemistry
-
(Ed. K. P. Lawley) J. Wiley
-
Pulay, P. (1987). "Analytical derivative methods in quantum chemistry" in Ab initio methods in Quantum Chemistry, II, 241-287 (Ed. K. P. Lawley) J. Wiley.
-
(1987)
Ab Initio Methods in Quantum Chemistry
, vol.2
, pp. 241-287
-
-
Pulay, P.1
-
10
-
-
26544447599
-
Ab initio, liquid water
-
Laasonen, K., Sprik, M., Parrinello, M. and Car (1993). "Ab initio, liquid water", J. Chem. Phys., 99, 9080-9089.
-
(1993)
J. Chem. Phys.
, vol.99
, pp. 9080-9089
-
-
Laasonen, K.1
Sprik, M.2
Parrinello, M.3
Car4
-
11
-
-
46149133757
-
A determination of the structure of water at 25°C
-
Soper, A. K. and Philips, M. G. (1986). "A determination of the structure of water at 25°C", Chem. Phys., 107, 47-60.
-
(1986)
Chem. Phys.
, vol.107
, pp. 47-60
-
-
Soper, A.K.1
Philips, M.G.2
-
12
-
-
4243810035
-
Simulation of enzyme reactions using valence bond force fields and other hybrid quantum/classical approaches
-
and references therein
-
Åqvist, J. and Warshel, A. (1993). ̊Simulation of enzyme reactions using valence bond force fields and other hybrid quantum/classical approaches̊, Chem. Rev., 93, 2523-2544 and references therein.
-
(1993)
Chem. Rev.
, vol.93
, pp. 2523-2544
-
-
Åqvist, J.1
Warshel, A.2
-
13
-
-
0001573685
-
Quantum mechanical and molecular mechanical studies on a model for dihydroxyacetone phosphate-glyceraldehyde phosphate isomerization catalyzed by triosephosphate isomerase (TIM)
-
Alagona, G., Desmeules, P., Ghio, C. and Kollman, P. A. (1984). "Quantum mechanical and molecular mechanical studies on a model for dihydroxyacetone phosphate-glyceraldehyde phosphate isomerization catalyzed by triosephosphate isomerase (TIM)", J. Am. Chem. Soc., 106, 3623-3632.
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 3623-3632
-
-
Alagona, G.1
Desmeules, P.2
Ghio, C.3
Kollman, P.A.4
-
14
-
-
84986513644
-
A combined quantum mechanical and molecular mechanical potential for molecular dynamics simulations
-
Field, M. J., Bash, P. A. and Karplus, M. (1990). "A combined quantum mechanical and molecular mechanical potential for molecular dynamics simulations", J. Comp. Chem., 700-733.
-
(1990)
J. Comp. Chem.
, pp. 700-733
-
-
Field, M.J.1
Bash, P.A.2
Karplus, M.3
-
15
-
-
0027125907
-
A priori evaluation of aqueous polarisation effects through Monte Carlo QM-MM simulations
-
Gao, J. and Xia, X. (1992). "A priori evaluation of aqueous polarisation effects through Monte Carlo QM-MM simulations", Science, 258, 631-635.
-
(1992)
Science
, vol.258
, pp. 631-635
-
-
Gao, J.1
Xia, X.2
-
16
-
-
0010505213
-
Internal motion and flexibility of benzene. A molecular dynamics study
-
Laaksonen, A., Wang, J. and Boyd, R. J. (1995). Internal motion and flexibility of benzene. A molecular dynamics study", Chem. Phys. Lett., 241, 380-386.
-
(1995)
Chem. Phys. Lett.
, vol.241
, pp. 380-386
-
-
Laaksonen, A.1
Wang, J.2
Boyd, R.J.3
-
18
-
-
0001600699
-
A Hybrid quantum mechanical force field molecular dynamics simulation of liquid methanol. Vibrational frequency shifts as a probe of the quantum mechanical molecular mechanical coupling
-
Wang, J., Boyd, R. J. and Laaksonen, A. (1996). "A Hybrid quantum mechanical force field molecular dynamics simulation of liquid methanol. Vibrational frequency shifts as a probe of the quantum mechanical molecular mechanical coupling", J. Chem. Phys., 104, 7261-7269.
-
(1996)
J. Chem. Phys.
, vol.104
, pp. 7261-7269
-
-
Wang, J.1
Boyd, R.J.2
Laaksonen, A.3
-
19
-
-
0000757140
-
Hybrid DFT-MD simulations of geometry and hyperfine structure of the CCH radical in argon matrices at low temperature
-
Eriksson, L. A. and Laaksonen, A. (1996). "Hybrid DFT-MD simulations of geometry and hyperfine structure of the CCH radical in argon matrices at low temperature", J. Chem. Phys., 105, 8195-8203.
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 8195-8203
-
-
Eriksson, L.A.1
Laaksonen, A.2
-
20
-
-
4243606192
-
Unified approach for molecular dynamics and density-functional theory
-
Car, R. and Parrinello, M. (1985). "Unified approach for molecular dynamics and density-functional theory", Phys. Rev. Lett., 55, 2471-2474.
-
(1985)
Phys. Rev. Lett.
, vol.55
, pp. 2471-2474
-
-
Car, R.1
Parrinello, M.2
-
21
-
-
10644250257
-
Inhomogeneous electron gas
-
Hohenberg, P. and Kohn, W. (1964). "Inhomogeneous electron gas", Phys. Rev., 136, B 864-871.
-
(1964)
Phys. Rev.
, vol.136
-
-
Hohenberg, P.1
Kohn, W.2
-
22
-
-
0042113153
-
Self-consistent equations including exchange and correlation effects
-
Kohn, W. and Sahm, L. J, (1963). "Self-consistent equations including exchange and correlation effects", Phys. Rev., 140, A 1133-1138.
-
(1963)
Phys. Rev.
, vol.140
-
-
Kohn, W.1
Sahm, L.J.2
-
24
-
-
34547564932
-
Forces in molecules
-
Feynman, R. P. (1939). "Forces in molecules", Phys. Rev., 56, 340-343.
-
(1939)
Phys. Rev.
, vol.56
, pp. 340-343
-
-
Feynman, R.P.1
-
25
-
-
20544463457
-
Soft self-consistent pseudopotentials in a generalized eigenvalue formalism
-
Vanderbilt, D. (1990). "Soft self-consistent pseudopotentials in a generalized eigenvalue formalism", Phys. Rev. B., 41, 7892-7895.
-
(1990)
Phys. Rev. B.
, vol.41
, pp. 7892-7895
-
-
Vanderbilt, D.1
-
26
-
-
0001172461
-
Implementation of ultrasoft pseudopotentials in ab initio molecular dynamics
-
Laasonen, K., Car, R., Lee, C. and Vanderbilt, D. (1991). "Implementation of ultrasoft pseudopotentials in ab initio molecular dynamics", Phys. Rev. B, 43, 6796-6799.
-
(1991)
Phys. Rev. B
, vol.43
, pp. 6796-6799
-
-
Laasonen, K.1
Car, R.2
Lee, C.3
Vanderbilt, D.4
-
27
-
-
0002766042
-
First principles molecular dynamics
-
(Eds. M. P. Allen and D. J. Tildesley), NATO ASI Kluwer, Dordrecht
-
Galli, G. and Pasquarallo, A. "First principles molecular dynamics" in Computer Simulations in Chemical Physics (Eds. M. P. Allen and D. J. Tildesley), NATO ASI Kluwer, Dordrecht, 1993.
-
(1993)
Computer Simulations in Chemical Physics
-
-
Galli, G.1
Pasquarallo, A.2
-
28
-
-
84947362301
-
Molecular dynamics without effective potentials via the Car-Parrinello approach
-
Remler, D. K. and Madden, P. A. (1990). "Molecular dynamics without effective potentials via the Car-Parrinello approach", Mol. Phys., 70, 921-966.
-
(1990)
Mol. Phys.
, vol.70
, pp. 921-966
-
-
Remler, D.K.1
Madden, P.A.2
-
30
-
-
0010922186
-
-
Gaussian, Inc., Pittsburgh, PA
-
Gaussian 94 (Revision B2), Frisch, M. J., Trucks, G. W., Schlegel, H. B., Gill, P. M. W., Johnson, B. G., Robb, M. A., Cheeseman, J. R., Keith, T. A., Peterson, G. A., Montgomery, J. A., Raghavachari, K., Al-Laham, M. A., Zakrewski, V. G., Ortiz, J. V., Foresman, J. B., Cioslowski, J., Stefanov, B. B., Nanaykkara, A., Challacombe, M., Peng, C. Y., Ayala, P. Y., Chen, W., Wong, M. W., Andres, J. L., Replogle, E. S., Gomperts, R., Martin, R. L., Fox, D. J., Binkley, J. S., Defrees, D. J., Baker, J., Stewart, J. P., Head-Gordon, M., Gonzales, C. and Pople, J. A. (1995). Gaussian, Inc., Pittsburgh, PA.
-
(1995)
Gaussian 94 (Revision B2)
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Gill, P.M.W.4
Johnson, B.G.5
Robb, M.A.6
Cheeseman, J.R.7
Keith, T.A.8
Peterson, G.A.9
Montgomery, J.A.10
Raghavachari, K.11
Al-Laham, M.A.12
Zakrewski, V.G.13
Ortiz, J.V.14
Foresman, J.B.15
Cioslowski, J.16
Stefanov, B.B.17
Nanaykkara, A.18
Challacombe, M.19
Peng, C.Y.20
Ayala, P.Y.21
Chen, W.22
Wong, M.W.23
Andres, J.L.24
Replogle, E.S.25
Gomperts, R.26
Martin, R.L.27
Fox, D.J.28
Binkley, J.S.29
Defrees, D.J.30
Baker, J.31
Stewart, J.P.32
Head-Gordon, M.33
Gonzales, C.34
Pople, J.A.35
more..
-
32
-
-
0343017595
-
Liquid water: Molecular correlation functions from X-ray diffraction
-
Narten, A. H. and Levy, H. A. (1971). "Liquid water: molecular correlation functions from X-ray diffraction", J. Chem. Phys., 55, 2263-2269.
-
(1971)
J. Chem. Phys.
, vol.55
, pp. 2263-2269
-
-
Narten, A.H.1
Levy, H.A.2
-
33
-
-
37049095962
-
Pressure and temperature dependence of self-diffusion in water
-
Krynicki, K., Green, C. D. and Sawyer, D. W. (1978)."Pressure and temperature dependence of self-diffusion in water", Faraday Discuss. Chem. Soc., 66, 199-208.
-
(1978)
Faraday Discuss. Chem. Soc.
, vol.66
, pp. 199-208
-
-
Krynicki, K.1
Green, C.D.2
Sawyer, D.W.3
-
34
-
-
2942587569
-
Proton spin-lattice relaxation in pure water between 0°C and 100°C
-
Krynicki, K. (1966). "Proton spin-lattice relaxation in pure water between 0°C and 100°C", Physica, 32, 167-178.
-
(1966)
Physica
, vol.32
, pp. 167-178
-
-
Krynicki, K.1
-
35
-
-
0002775934
-
Interaction models for water in relation to protein hydration
-
(Ed. B. Pullman), Reidel Dordrecht
-
Berendsen, H. J. C., Postma, J. P. M., van Gunsteren, W. F. and Hermans, J. "Interaction models for water in relation to protein hydration" in Intermolecular Forces, 331-342, (Ed. B. Pullman), Reidel Dordrecht.
-
Intermolecular Forces
, pp. 331-342
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Hermans, J.4
-
36
-
-
0001251663
-
Molecular-dynamics of atomic motions in water
-
Toukan, K. and Rahman, A. (1981). "Molecular-dynamics of atomic motions in water", Phys. Rev. B, 31, 2643-2648.
-
(1981)
Phys. Rev. B
, vol.31
, pp. 2643-2648
-
-
Toukan, K.1
Rahman, A.2
-
37
-
-
84943502952
-
A molecular dynamics method for simulations in the canonical ensemble
-
Nóse, S. (1984). "A molecular dynamics method for simulations in the canonical ensemble", Mol. Phys., 52, 255-268.
-
(1984)
Mol. Phys.
, vol.52
, pp. 255-268
-
-
Nóse, S.1
-
38
-
-
0001538909
-
Canonical dynamics: Equilibrium phase-space distributions
-
Hoover, W. G. (1985). "Canonical dynamics: equilibrium phase-space distributions", Phys. Rev. A, 31, 1695-1697.
-
(1985)
Phys. Rev. A
, vol.31
, pp. 1695-1697
-
-
Hoover, W.G.1
-
39
-
-
0000523140
-
A combined density functional and molecular dynamics simulation of a quantum water molecule in aqueous solution
-
Wei, D. and Salahub, D. R. (1994). "A combined density functional and molecular dynamics simulation of a quantum water molecule in aqueous solution", Chem. Phys. Lett., 224, 291-296.
-
(1994)
Chem. Phys. Lett.
, vol.224
, pp. 291-296
-
-
Wei, D.1
Salahub, D.R.2
-
40
-
-
4244118545
-
A coupled density functional-molecular mechanics Monte Carlo simulation method: The water molecule in liquid water
-
Tunon, I., Martins-Costa, M. T. C., Millot, C., Ruiz-Lopez, M. F. and Rivail, J. L. (1996). "A coupled density functional-molecular mechanics Monte Carlo simulation method: The water molecule in liquid water", J. Comp. Chem., 17, 19-29.
-
(1996)
J. Comp. Chem.
, vol.17
, pp. 19-29
-
-
Tunon, I.1
Martins-Costa, M.T.C.2
Millot, C.3
Ruiz-Lopez, M.F.4
Rivail, J.L.5
-
41
-
-
0001478318
-
Electronic polarization of a water molecule in water. A combined quantum mechanical and statistical mechanical treatment
-
Moriarty, N. W. and Karlström, G. (1996). " Electronic polarization of a water molecule in water. A combined quantum mechanical and statistical mechanical treatment", J. Phys. Chem., 100, 17791-17796.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 17791-17796
-
-
Moriarty, N.W.1
Karlström, G.2
-
42
-
-
0001723472
-
Ab initio molecular dynamics simulation of liquid water: Comparison of three gradient-corrected density functionals
-
Sprik, M., Hutter, H. and Parrinello, M. (1996). "Ab initio molecular dynamics simulation of liquid water: comparison of three gradient-corrected density functionals", J. Chem. Phys., 105, 1142-1152.
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 1142-1152
-
-
Sprik, M.1
Hutter, H.2
Parrinello, M.3
-
43
-
-
0000935021
-
First principles simulations of fluid water: The radial distribution function
-
Ortega, J., Lewis, J. P. and Sankey, O. F. (1997). "First principles simulations of fluid water: the radial distribution function", J. Chem. Phys., 106, 3696-3701.
-
(1997)
J. Chem. Phys.
, vol.106
, pp. 3696-3701
-
-
Ortega, J.1
Lewis, J.P.2
Sankey, O.F.3
-
44
-
-
0842341771
-
AM1: A new general purpose quantum mechanical molecular model
-
Dewar, M. J. S., Zoebisch, E. G., Healy, E. F. and Stewart, J. J. P. (1985). "AM1: A new general purpose quantum mechanical molecular model", J. Am. Chem. Soc., 107, 3902-3909.
-
(1985)
J. Am. Chem. Soc.
, vol.107
, pp. 3902-3909
-
-
Dewar, M.J.S.1
Zoebisch, E.G.2
Healy, E.F.3
Stewart, J.J.P.4
-
45
-
-
84906391926
-
Temperature and size dependence for Monte Carlo simulations of TIP4P water
-
Jorgensen, W. L. and Madura, J. D. (1986). "Temperature and size dependence for Monte Carlo simulations of TIP4P water", Mol. Phys., 56, 1381-1392.
-
(1986)
Mol. Phys.
, vol.56
, pp. 1381-1392
-
-
Jorgensen, W.L.1
Madura, J.D.2
-
46
-
-
0001624472
-
Molecular dynamics simulation of dielectric properties of water
-
Anderson, J., Ullo, J. J. and Yip, S. (1987). "Molecular dynamics simulation of dielectric properties of water", J. Chem. Phys., 87, 1726-1732.
-
(1987)
J. Chem. Phys.
, vol.87
, pp. 1726-1732
-
-
Anderson, J.1
Ullo, J.J.2
Yip, S.3
-
48
-
-
84947351879
-
Parallel computers and molecular simulation
-
Fincham, D. (1987). "Parallel computers and molecular simulation", Molecular Simulation, 1, 1-45.
-
(1987)
Molecular Simulation
, vol.1
, pp. 1-45
-
-
Fincham, D.1
-
49
-
-
0026120011
-
Molecular dynamics on hybercube parallel computers
-
1991
-
Smith, W. (1991). Comput. Phys. Comm., "Molecular dynamics on hybercube parallel computers", 62, 229-248 (1991).
-
(1991)
Comput. Phys. Comm.
, vol.62
, pp. 229-248
-
-
Smith, W.1
-
50
-
-
84990642380
-
Data-parallel large-scale molecular dynamics for liquids
-
Hedman, F. and Laaksonen, A. (1993). "Data-parallel large-scale molecular dynamics for liquids", Int. J. Quant. Chem., 46, 27-38.
-
(1993)
Int. J. Quant. Chem.
, vol.46
, pp. 27-38
-
-
Hedman, F.1
Laaksonen, A.2
-
51
-
-
84963474884
-
A data-parallel molecular dynamics method for liquids with coulombic interactions
-
Hedman, F. and Laaksonen, A. (1995). "A data-parallel molecular dynamics method for liquids with coulombic interactions", Molecular Simulation, 14, 235-244.
-
(1995)
Molecular Simulation
, vol.14
, pp. 235-244
-
-
Hedman, F.1
Laaksonen, A.2
|