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Volumn 26, Issue 6, 1997, Pages 1749-1763

A fast algorithm for the computation and enumeration of perfect phylogenies

Author keywords

Combinatorial enumeration; Dynamic programming; Evolutionary trees; Perfect phylogeny; Polynomial delay algorithms

Indexed keywords


EID: 0008827068     PISSN: 00975397     EISSN: None     Source Type: Journal    
DOI: 10.1137/S0097539794279067     Document Type: Article
Times cited : (62)

References (19)
  • 1
    • 0028750140 scopus 로고
    • A polynomial-time algorithm for the perfect phylogeny problem when the number of character states is fixed
    • R. AGARWALA AND D. FERNÁNDEZ-BACA, A polynomial-time algorithm for the perfect phylogeny problem when the number of character states is fixed, SIAM J. Comput., 23 (1994), pp. 1216-1224.
    • (1994) SIAM J. Comput. , vol.23 , pp. 1216-1224
    • Agarwala, R.1    Fernández-Baca, D.2
  • 2
    • 0041674635 scopus 로고
    • Fast and Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs
    • Rutgers University, New Brunswick, NJ
    • R. AGARWALA AND D. FERNÁNDEZ-BACA, Fast and Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs, DIMACS Tech. Report 94-51, Rutgers University, New Brunswick, NJ, 1994.
    • (1994) DIMACS Tech. Report 94-51
    • Agarwala, R.1    Fernández-Baca, D.2
  • 3
    • 85010120898 scopus 로고
    • Two strikes against perfect phylogeny
    • Proceedings of the 19th International Colloquium on Automata, Languages, and Programming, Springer-Verlag, New York
    • H. BODLAENDER, M. FELLOWS, AND T. WARNOW, Two strikes against perfect phylogeny, in Proceedings of the 19th International Colloquium on Automata, Languages, and Programming, Lecture Notes in Computer Science, Springer-Verlag, New York, 1992, pp. 273-283.
    • (1992) Lecture Notes in Computer Science , pp. 273-283
    • Bodlaender, H.1    Fellows, M.2    Warnow, T.3
  • 4
    • 38249003604 scopus 로고
    • A simple linear time algorithm for triangulating three-colored graphs
    • H. BODLAENDER AND T. KLOKS, A simple linear time algorithm for triangulating three-colored graphs, J. Algorithms, 15 (1993), pp. 160-172.
    • (1993) J. Algorithms , vol.15 , pp. 160-172
    • Bodlaender, H.1    Kloks, T.2
  • 5
    • 49549154127 scopus 로고
    • A characterization of rigid circuit graphs
    • P. BUNEMAN, A characterization of rigid circuit graphs, Discrete Math., 9 (1974), pp. 205-212.
    • (1974) Discrete Math. , vol.9 , pp. 205-212
    • Buneman, P.1
  • 6
    • 0004485904 scopus 로고
    • Computational complexity of inferring phylogenies by compatibility
    • W. H. E. DAY AND D. SANKOFF, Computational complexity of inferring phylogenies by compatibility, Syst. Zool., 35 (1986), pp. 224-229.
    • (1986) Syst. Zool. , vol.35 , pp. 224-229
    • Day, W.H.E.1    Sankoff, D.2
  • 7
    • 38249012617 scopus 로고
    • Convex tree realizations of partitions
    • A. DRESS AND M. STEEL, Convex tree realizations of partitions, Appl. Math. Lett., 5 (1992), pp. 3-6.
    • (1992) Appl. Math. Lett. , vol.5 , pp. 3-6
    • Dress, A.1    Steel, M.2
  • 8
    • 0006865338 scopus 로고
    • Cladistic methodology: A discussion of the theoretical basis for the induction of evolutionary history
    • G. F. ESTABROOK, Cladistic methodology: a discussion of the theoretical basis for the induction of evolutionary history, Ann. Rev. Ecol. Syst., 3 (1972), pp. 427-456.
    • (1972) Ann. Rev. Ecol. Syst. , vol.3 , pp. 427-456
    • Estabrook, G.F.1
  • 11
    • 84987049379 scopus 로고
    • Efficient algorithms for inferring evolutionary trees
    • D. GUSFIELD, Efficient algorithms for inferring evolutionary trees, Networks, 21 (1991), pp. 19-28.
    • (1991) Networks , vol.21 , pp. 19-28
    • Gusfield, D.1
  • 12
    • 0010940496 scopus 로고
    • Triangulating three-colored graphs
    • S. KANNAN AND T. WARNOW, Triangulating three-colored graphs, SIAM J. Discrete Math., 5 (1992), pp. 249-258.
    • (1992) SIAM J. Discrete Math. , vol.5 , pp. 249-258
    • Kannan, S.1    Warnow, T.2
  • 13
    • 0028484735 scopus 로고
    • Inferring evolutionary history from DNA sequences
    • S. KANNAN AND T. WARNOW, Inferring evolutionary history from DNA sequences, SIAM J. Comput., 23 (1994), pp. 713-737.
    • (1994) SIAM J. Comput. , vol.23 , pp. 713-737
    • Kannan, S.1    Warnow, T.2
  • 14
    • 84963056475 scopus 로고
    • A method of selection of characters in numerical taxonomy
    • W. J. LE QUESNE, A method of selection of characters in numerical taxonomy, Syst. Zool., 18 (1969), pp. 201-205.
    • (1969) Syst. Zool. , vol.18 , pp. 201-205
    • Le Quesne, W.J.1
  • 15
    • 0000747964 scopus 로고
    • Further studies based on the uniquely derived character concept
    • W. J. LE QUESNE, Further studies based on the uniquely derived character concept, Syst. Zool., 21 (1972), pp. 281-288.
    • (1972) Syst. Zool. , vol.21 , pp. 281-288
    • Le Quesne, W.J.1
  • 17
    • 85033173732 scopus 로고
    • Character-Based Construction of Evolutionary Trees for Natural Languages
    • University of Pennsylvania, Philadelphia, PA
    • D. RINGE, T. WARNOW, AND A. TAYLOR, Character-Based Construction of Evolutionary Trees for Natural Languages, IRCS Tech. Report, University of Pennsylvania, Philadelphia, PA, 1995.
    • (1995) IRCS Tech. Report
    • Ringe, D.1    Warnow, T.2    Taylor, A.3
  • 18
    • 52449147252 scopus 로고
    • The complexity of reconstructing trees from qualitative characters and subtrees
    • M. A. STEEL, The complexity of reconstructing trees from qualitative characters and subtrees, J. Classification, 9 (1992), pp. 91-116.
    • (1992) J. Classification , vol.9 , pp. 91-116
    • Steel, M.A.1
  • 19
    • 25444526825 scopus 로고
    • Constructing phylogenetic trees efficiently using compatibility criteria
    • T. WARNOW, Constructing phylogenetic trees efficiently using compatibility criteria, New Zealand J. Botany, 31 (1993), pp. 239-248.
    • (1993) New Zealand J. Botany , vol.31 , pp. 239-248
    • Warnow, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.