How do proteins recognize DNA? Solution structure and local conformational dynamics of lac operators by 2D NMR

Journal of Biomolecular Structure and Dynamics

Volumn 17, Issue SUPPL. 1, 2000, Pages 123-133

  Kaluarachchi, Kumaralal ^a   Gorenstein, David G ^a   Luxon, Bruce A ^a  

^a University of Texas Medical Branch School of Medicine   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; SOLUTION AND SOLUBILITY;

CHEMISTRY; CONFORMATION; MOLECULAR GENETICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEOTIDE SEQUENCE; SOLUTION AND SOLUBILITY;

BASE SEQUENCE; DNA; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; SOLUTIONS;

EID: 0008148175     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2000.10506612     Document Type: Article

References (46)

1. Landschulz, W. H., Johnson, P. F., & McKnight, S. L., Science 240, 1759-1764, (1988).
2. Wolberger, C., Dong, Y., Ptashne, M., & Harrison, S. C., Nature 335, 789-795, (1988).
3. Jordan, S. R. & Pabo, C. O., Science 242, 893-899, (1988).
4. Otwinowski, Z., Schevitz, R. W., Zhang, R. G., Lawson, C. L., Joachimiak, A., Marmorstein, R. Q., Luisi, B. F., & Sigler, P. B, Nature 335, 321, (1988).
5. Beamer, L. J. & Pabo, C. O., J. Mol. Biol. 227, 177-196, (1992).
6. Somers, W. S. & Phillips, S. E. V., Nature 359, 387-393, (1992).
7. Karslake, C., Schroeder, S., Wang, P. L., & Gorenstein, D. G., Biochemistry 29, 6578-6584, (1990).
8. Karslake, C., Botuyan, M. V., & Gorenstein, D. G., Biochemistry 31, 1849-1858, (1992).
9. Gilbert, W., Gralla, J., Major, J., & Maxam, A. (1975) in Protein-Ligand Interactions, 270-288, de Gruyter, Berlin.
10. Lehming, N., Sartorius, J., Oehler, S., von Wilcken-Bergmann, B., & Müller-Hill, B., Proc. Natl. Acad. Sci., U. S. A. 85, 7947-7951, (1988).
11. Lehming, N., Sartorius, J., Kisters-Woike, B., von Wilcken-Bergmann, B., & Müller-Hill, B., EMBO J. 9, 615-621, (1990).
12. Caruthers, M. H., Acc. Chem. Res. 13, 155-160, (1980).
13. Ptashne, M. (1986) in A Genetic Switch, Cell Press, Cambridge, MA.
14. Wharton, R. P. & Ptashne, M., Nature 316, 601-605, (1985).
15. Wharton, R. P. & Ptashne, M., Nature 326, 888, (1987).
16. Betz, J. L., Gene 42, 283-292, (1986).
17. Betz, J. L., J. Mol. Biol. 195, 495-504, (1987).
18. Kaiser, E. T. (1986) in Protein Structure Folding and Design, 207-219, Alan R. Liss (Oxender, D. Ed.), New York.
19. Eisenbeis, S. J., Nasoff, M. S., Noble, S. A., Bracco, L. P., Dodds, D. R., & Caruthers, M. H., Proc. Natl. A cad. S ci. 82, 1084-1088, (1985).
20. Koudelka, G. B., Harrison, S. C., & Ptashne, M., Nature 326, 886, (1987).
21. Lehming, N., Sartorius, J., Niemøller, M., Genenger, G., Wilcken Bergmann, B., & Müller-Hill, B., EMBO J. 6, 3145-3153, (1987).
22. Dickerson, R. E., J. Mol. Biol. 166, 419-441, (1983).
23. Yang, J. C. & Gorenstein, D. G., Tetrahedron Lett. 25, 4627, (1984).
24. Dickerson, R. E., J. Mol. Biol. 166, 419-441, (1983).
25. Schroeder, S. A., Fu, J. M., Jones, C. R., & Gorenstein, D. G., Biochemistry 26, 3812-3821, (1987).
26. Karslake, C., Wisniowski, P., Spangler, B. D., Moulin, A. C., Wang, P. L., & Gorenstein, D. G. J. Am. Chem. Soc. 113, 4003-4005, (1991).
27. Davis, D. G. & Bax, A., J. Am. Chem. Soc. 107, 2820-2821, (1985).
28. Kastrup, R. V., Young, M. A., & Krugh, T. R., Biochemistry 17, 4855-4865, (1978).
29. Nikonowicz, E. P., Meadows, R., Post, C., Jones, C., & Gorenstein, D. G., Bull. Magn. Reson. 11, 226-229, (1989).
30. Post, C. B., Meadows, R. P., & Gorenstein, D. G., J. Am. Chem. Soc. 112, 6796-6803, (1990).
31. Darden, T. A., York, D., & Pedersen, L., J. Chem. Phys. 98, 10089, (1993).
32. Essman, U., Perera, L., Berkowitz, M. L., Harden, T., Lee, H., & Pedersen, L. G., J. Chem. Phys. 8577-8593, (1995).
33. Scheek, R. M., Stob, S., Boelens, R., Dijkstra, K., & Kaptein, R., J. Am. Chem. Soc. 107, 705-706, (1985).
34. Hare, D. R., Wemmer, D. E., Chou, S. H., Drobny, G., & Reid, B., J. Mol. Biol. 171, 319, (1983).
35. Schroeder, S., Fu, J., Jones, C., & Gorenstein, D. G., Biochemistry 26, 3812-3821, (1987).
36. Kaluarachchi, K., Meadows, R. P., & Gorenstein, D. G., Biochemistry 30, 8785-8797, (1991).
37. Schroeder, S. A., Roongta, V., Fu, J. M., Jones, C. R., & Gorenstein, D. G., Biochemistry 28, 8292-8303, (1989).
38. Gorenstein, D. G., Schroeder, S. A., Fu, J. M., Metz, J. T., Roongta, V. A., & Jones, C. R., Biochemistry 27, 7223-7237, (1988).
39. Nikonowicz, E. P. & Gorenstein, D. G., Biochemistry 29, 8845-8858, (1990).
40. Powers, R. & Gorenstein, D. G., Biochemistry 29, 9994-10008, (1990).
41. Cho, Y., Zhu, F. C., Luxon, B. A., & Gorenstein, D. G., J. of Biomol. Struct. & Dyn. 11, 685-702, (1993).
42. Gorenstein, D. G. (1994) in Phosphorus-31 NMR Spectral Properties in Compound Characterization and Structural Analysis (Quin, L. D. & Verdake, J., Eds.) VCH, New York.
43. Hu, W., Bouaziz, S., Skripkin, E., & Kettani, A., J. of Mag. Res., 139, 181-185, (1999).
44. Anderson, J. E., Plashne, M., & Harrison, S. C., Nature 326, 846-852, (1987).
45. Miller, J. H. & Reznikoff, W. S. (1978) in The Operon, Cold Spring Harbor Laboratory, New York.
46. Groeddel, D. V., Yanasura, D. G., & Caruthers, M. H., Proc. Natl. Acad. Sci. 75, 3578-3582, (1978).