Use of introgression lines and zonal mapping to identify RAPD markers linked to QTL

Molecular Breeding

Volumn 3, Issue 3, 1997, Pages 203-212

  McNally, K L ^a,b   Mutschler, M A ^a,b  

^a Cornell University ^*  (United States)

^b INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

Author keywords

Acylglucose transferase; Acylsugar QTLs; Insect resistance; Integrated RFLP RAPD map; RAPDs

Indexed keywords

GENES; PLANTS (BOTANY);

ACYLGLUCOSE TRANSFERASE; ACYLSUGAR QTL; INSECT RESISTANCE; INTEGRATED RFLP/RAPD MAP; INTROGRESSED; INTROGRESSION LINES; LYCOPERSICON; QUANTITATIVE TRAIT LOCUS; RAPD; RAPD MARKERS;

MAPPING;

INSECTA; LYCOPERSICON ESCULENTUM; LYCOPERSICON PENNELLII;

EID: 0006985671     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1009657122293     Document Type: Article

References (42)

1. Barzen E, Mechelke W, Ritter E, Schulte-Kappert E, Salamini F: An extended map of the sugar beet genome containing RFLP and RAPD loci. Theor Appl Genet 90: 189-193 (1995).
2. Bonierbale MW, Plaisted RL, Pineda O, Tanksley SD: QTL analysis of trichome-mediated insect resistance in potato. Theor Appl Genet 87: 973-987 (1994).
3. Byrne M, Murrell JC, Allen B, Moran GF: An integrated genetic linkage map for eucalypts using RFLP, RAPD and isozyme markers. Theor Appl Genet 91: 869-875 (1995).
4. Cai Q, Guy CL, Moore GA: Extension of the linkage map in Citrus using random amplified polymorphic DNA (RAPD) markers and RFLP mapping of cold-acclimation-responsive-loci. Theor Appl Genet 89: 606-614 (1994).
5. Causse MA, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald PC, Harrington SE, Second G, McCouch SR, Tanksley SD: Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138: 1251-1274 (1994).
6. Chen FQ, Prehn D, Hayes PM, Mulrooney D, Corey A, Vivar H: Mapping genes for resistance to barley stripe rust (Puccinia striformis f. sp. hordei). Theor Appl Genet 88: 215-219 (1994).
7. Doyle JJ, Dickson EE: Preservation of plant samples for DNA restriction endonuclease analysis. Taxon 36: 715-722 (1987).
8. Eshed Y, Abu-Abied M, Saranga Y, Zamir D: Lycopersicon esculentum lines containing small overlapping introgressions from L. pennellii. Theor Appl Genet 83: 1027-1034 (1992).
9. Feinberg AP, Vogelstein B: A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 137: 6-13 (1983).
10. Feinberg AP, Vogelstein B: Addendum: A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 137: 266-267 (1984).
11. Fulton TM, Chunwongse J, Tanksley SD: Microprep protocol for extraction of DNA from tomato and other herbaceous plants. Plant Mol Biol Rep 13: 207-209 (1995).
12. Giese H, Holm-Jensen AG, Mathiassen H, Kjaer B, Rasmussen SK, Bay H, Jensen J: Distribution of RAPD markers on a linkage map of barley. Hereditas 120: 267-273 (1994).
13. Giovannoni JJ, Wing RA, Ganal MW, Tanksley SD: Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations. Nucl Acids Res 19: 6553-6558 (1991).
14. Goffreda JC, Ave DA, Mutschler MA, Steffens JC, Tingey WM: Aphid deterrence by glucose esters in the glandular trichome exudate of the wild tomato, L. pennellii. J Chem Ecol 15: 2135-2147 (1989).
15. Grattapaglia D, Bertolucci FL, Sederoff RR: Genetic mapping of QTLs controlling vegetative propagation in Eucalyptus grandis and E. urophyla using a pseudo-testcross strategy and RAPD markers. Theor Appl Genet 90: 944-947 (1995).
16. Grattapaglia D, Sederoff RR: Genetic linkage maps of Eucalyptus grandis and E. urophyla using a pseudo-testcross mapping strategy and RAPD markers. Genetics 137: 1121-1137 (1994).
17. Haldane JBS: The combination of linkage values and the calculation of distance between the loci of linked factors. J Genet 8: 299-309 (1919).
18. Hawthorne DM, Shapiro JA, Tingey WM, Mutschler MA: Trichome-borne and artificially applied acylsugars of wild tomato deter feeding and oviposition of the leafminer, Liriomyza trifolii. Entomol Exp Appl 65: 65-73 (1992).
19. Juvik JA, Shapiro JA, Young TE, Mutschler MA: Acylglucoses of the wild tomato Lycopersicon pennellii alter behavior and reduce growth and survival of Helicoverpa zea and Spodoptera exigua. J Econ Entomol 87: 482-492 (1993).
20. Kaeppler SM, Phillips RL, Kim TS: Use of near-isogenic lines derived by backcrossing or selfing to map qualitative traits. Theor Appl Genet 87: 233-237 (1993).
21. Kjaer B, Jensen J, Giese H: Quantitative trait loci for heading date and straw characters in barley. Genome 38: 1098-1104 (1995).
22. Kurata H, Nagamura Y, Yamamoto K, Harushima Y, Sue N, Wu J, Antonio BA, Shomura A, Shimizu T, Lin SY, Inoue T, Fukuda A, Shimano T, Kuboki Y, Toyama T, Miyamoto Y, Kirihara T, Hayasaka K, Miyao A, Monna L, Zhong HS, Tamura Y, Wang ZX, Momma T, Umehara Y, Yano M, Sasaki T, Minobe Y: A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nature Genet 8: 365-372 (1994).
23. Lawson DM, Lunde CF, Mutschler MA: Marker assisted transfer of aculsugar-mediated pest resistance from the wild tomato, Lycopersicon pennellii, to the cultivated tomato, Lycopersicon esculentum. Submitted.
24. Liedl BE, Lawson DM, White KK, Shapiro JA, Cohen DE, Carson WG, Trumble JT, Mutschler MA: Acylglucoses of the wild tomato Lycopersicon pennellii (Corr.) D'Arcy alters settling and reduces oviposition of Bemisia argentifolii (Homoptera: Aleyrodidae). J Econ Entomol 88: 742-748 (1995).
25. Lincoln SE, Daly MJ, Lander ES: Constructing genetic linkage maps with MAPMAKER/EXP version 3.0: A tutorial and reference manual, 3rd ed. Whitehead Institute Technical Report (1992).
26. Lodhi MA, Daly MJ, Yo GN, Weeden NF, Reisch BI: A molecular marker based linkage map of Vitis. Genome 38: 786-794 (1995).
27. Mahalingham B, Skorupska HT: DNA markers for resistance to Heterodera glycines I. race 3 in soybean cultivar Peking. Breed Sci 45: 435-443 (1995).
28. 2 from Lycopersicon esculentum x Lycopersicon hirsutum f. glabratum. Heredity 75: 425-433 (1995).
29. Maniatis T, Fritsch EF, Sambrook J: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1982).
30. Michelmore RW, Paran I, Kesseli RV: Identification of markers linked to disease-resistance genes by bulked segregant analysis a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci USA 88: 9828-9832 (1991).
31. Miller JC, Tanksley SD: RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon. Theor Appl Genet 80: 437-448 (1990).
32. Mutschler MA, Doerge RW, Liu SC, Kuai JP, Liedl BE, Shapiro JA: QTL analysis of pest resistance in the wild tomato Lycopersicon pennellii: QTLs controlling acylsugar level and composition. Theor Appl Genet 92: 709-718 (1996).
33. Nienhuis J, Helentjaris T, Slocum M, Ruggero B, Schaefer A: Restriction fragment length polymorphism analysis of loci associated with insect resistance in tomato. Crop Sci 27: 797-803 (1987).
34. Paterson AH, Deverna JW, Lanini B, Tanksley SD: Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes in an interspecies cross of tomato. Genetics 124: 735-742 (1990).
35. Pillen K, Pineda O, Lewis CB, Tanksley SD: Status of genome mapping tools in the taxon Solanaceae. Adv Cell Mol Biol Plants 1: 310-326 (1996).
36. Rodriguez AE, Tingey WM, Mutschler MA: Acylsugars produced by type IV trichomes of Lycopersicon pennellii deter settling of the green peach aphid, Myzus persicae. J Econ Entomol 86: 34-39 (1993).
37. Sato S, Sakamoto I, Shirakawa K, Nakasone S: Chromosomal location of an earliness gene ef-1 of rice Oryza sativa L. Jpn J Breed 38: 385-396 (1988).
38. Schon CC, Lee M, Melchinger AE, Guthrie WD, Woodman WL: Mapping and characterization of quantitative trait loci affecting resistance against second-generation European corn borer in maize with the aid of RFLPs. Heredity 70: 648-659 (1993).
39. Shapiro JA, Steffens JC, Mutschler MA: Acylsugars of the wild tomato Lycopersicon pennellii in relation to its geographic distribution. J Biochem Syst 22: 545-561 (1994).
40. Wang GL, Mackill DJ, Bonman JM, McCouch SR, Nelson RJ (1993) RFLP mapping of genes conferring complete and partial resistance in a rice cultivar with durable resistance to blast. In: Jacobs T, Parlevliet JE (eds). Current Plant Science and Biotechnology in Agriculture, vol. 18, pp. 219-225. Kluwer Academic Publishers, Dordrecht (1993).
41. Welsh J, McClelland M: Fingerprinting genomes using PCR with arbitrary primers. Nucl Acids Res 18: 7213-7218 (1990).
42. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV: DNA polymorphisms amplified by arbitrary primers are useful as genetics markers. Nucl Acids Res 19: 6531-6535 (1990).