Differential screening using high density filters reveals a dramatic change in gene expression at different growth phase in Arabidopsis cell suspension cultures

Plant Physiology and Biochemistry

Volumn 34, Issue 3, 1996, Pages 425-430

  Hervé, Christine ^a   Perret, Eric ^a   Tyemousaygue, Dominique ^a   Lescure, Bernard ^a,b  

^a CEMAGREF   (France)

^b SANOFI   (France)

Author keywords

Arabidopsis thaliana; Differential screening; Expressed sequence tag; Organized cDNA library; Stress related genes

Indexed keywords

EID: 0006282358     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (31)

1. Adams M. D., Dubnick M., Kerlavage A. R., Morcno R., Kelley J. M., Utterback T. R., Nagle J. W., Fields C. and Venter J. C., 1992. Sequence identification of 2375 human brain genes. Nature, 355, 632-634.
2. Altschul S., Gish W., Miller W., Myers E.W. and Lipman D., 1990. Basic local alignment search tool. J. Mol. Blol, 215, 403-410.
3. Axelos M., Curie C., Mazzolini L., Bardet C. and Lescure B., 1992. A protocol for transient gene expression in Arabidopsis thaliana protoplasts isolated from cell suspension cultures. Plant Physiol. Blochem., 30, 123-128.
4. Balzi E., Wang M., Leterme S., Van Dyck L. and Goffeau A., 1994. PDR5, a novel yeast multidrug resistance conferring transporter controlled by the transcription regulator PDR1. J. Biol. Cliein., 269, 22062214.
5. Bartel B. and Fink G. R, 1994. Differential regulation of an auxin-producing nitrilase gene family in Arabidopsis thaliana. Proc. Natl. Acad. Sei. USA, 91, 6649-6653.
6. Bergmann C. W., Ito Y., Singer D., Albersheim P., Darvill A. G., Benhamou N., Nuss L., Salvi G., Cervone F. and De Lorenzo G., 1994. Polygalacturonase-inhibiting protein accumulates in Phaseolus vulgaris L. in response to wounding elicitors and fungal infection. Plant J., 5, 625-634.
7. Callard D., Lescure B. and Mazzolini L., 1994. A method for the elimination of false positives that arise in the isolation of differentialy expressed genes by the differential display RT-PCR technique. BioTechniques, 16, 1096-1103.
8. Caput D., Beutler B., Hartog K., Thayer R., BrownShinier S. and Cerami A., 1986. Identification of a common nucleid sequence in the 3'-untranslated region of mRNA molecules specifying inflammatory mediators. Proc. Natl. Acad. Sei. USA, 83, 1670-1674.
9. Chen Z., Suva H. and Klessig D. F., 1993. Active oxygen species in the induction of plant systemic acquired resistance by salicylic acid. Science, 262, 1883-1886.
10. Chomczynski P. and Sacchi N., 1987. Single-step method of RNA isolation by acid guanidinium thiocyanatephenol-chloroform extraction. Anal. Biochem., 162, 159-169.
11. Cooke R., Raynal M., Laudié M., Grelle! F., Delseny M., Morris P. C., Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y. F., Mache R., Krivitzky M., Gy I. J. J, Kreis M., Lecharny A., Parmentier Y., Marbach J., Fleck J., Clément B., Philipps G., Hervé C., Bardet C., Tremousaygue D., Lescure B., Lacomme C., Roby D., Jourjon M. F., Chabrier P., Charpentcau J. L., Desprez T., Amselem J., Chiapello H. and Höfte H., 1995. Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs. Plant J., 9, 101-124.
12. Farmer E. E. and Ryan C. A., 1990. Interplant communication: airborne methyl jasmonate induces synthesis of proteinase inhibitors in plant leaves. Proc. Natl. Acad. Sei. USA, 87, 7713-7716.
13. Granell A., Harris N., Pisabarro A. G. and Carbonell J., 1992. Temporal and spacial expression of thiolprotease gene during pea ovary senescence, and its regulation by gibberellin. Plant J., 2, 907-915.
14. Hensel L. L., Grbic V., Baumgarten D. A. and Bleecker A. B., 1993. Developmental and age-related processes that influence the longevity and senescence of photosynthetic tissues in Arabidopsis. Plant Cell, 5, 553-564.
15. Hervé C., Tremousaygue D. and Lescure B., 1995. Nucleotide sequence (GenBank Z46816) of an Arabidopsis cDNA encoding a serine proteinase inhibitor ATTI-2. Plant Physiol., 108, 1342.
16. Höfte H., Desprez T., Amselem H., Chiapello H., Caboche M., Moisan A., Jourjon M-F., Charpenteau J.-L., Berthomicu P., Guerrier D., Giraudat J., Quigley F., Thomas F., De-Yao Y., Mache R., Raynal M., Cooke R., Grellet F., Delseny M., Parmentier Y., de Marcillac G., Gigot C., Fleck J., Phillipps G., Axelos M., Bardet C., Tremousaygue D. and Lescure B., 1993. An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana. Plant J., 4, 1051-1061.
17. Jutidamrongphan W., Mackinnon G., Manners J. M. and Scott K. J., 1989. Sequence of a near-full length cDNA clone for a mRNA of barley induce by fungal infection. Nucl. Acids Res., 17, 9478.
18. Kiyosue T., Beetham J. K., Pinot F., Hammock B. D., Yamaguchi-Shinozaki K. and Shinozaki K., 1994. Characterization of an Arabidopsis cDNA for a soluble epoxide hydrolase gene that is inducible by auxin and water stress. Plant J., 6, 259-269.
19. Logemann J., Schell J. and Willmitzer L., 1987. Improved method for the isolation of RNA from plant tissues. Anal. Biochem., 163, 16-20.
20. Nevvman T., De Bruijn F., Green P., Keegstra K., Keude H., Macintosh L., Ohlrogge J., Raikhle N., Somerville S., Thoniashow M., Retzel E. and Somerville C., 1994. Gene galore: a summary of the method for accessing the results of large scale partial sequencing of anonymous Arabidopsis thaliana cDNA clones. Plant Physiol, 106, 1241-1255.
21. Pan A., Yang M., Tie F., Li L., Chen Z. and Ru B., 1994. Expression of mousse metallothionein-1 gene confers cadmium resistance in transgenic tabacco plants. Plant Mol. Biol, 24, 341-351.
22. Pang Q., Hays J. B. and Rajagopal H., 1993. Two cDNAs from the plant Arabidopsis thaliana that partially restore recombination proficiency and DNA-damage resistance to E. coli mutants lacking recombinationintermediate-resolution activities. Nucl. Acids Res., 21, 1647-1653.
23. Patanjali S. R., Parimoo S. and Weissman S. M., 1991. Construction of uniform-abundance (normalized) cDNA library. Proc. Natl. Acad. Sei. USA, 88, 1943-1947.
24. Pistelli L., De Bellis L. and Alpi A., 1991. Peroxisomal enzyme activities in attached senescing leaves. Planta, 184, 151-153.
25. Regad F., Bandet C., Tremousaygue D., Moisan A., Lescure B. and Axelos M., 1993. cDNA cloning and expression of an Arabidopsis GTP-binding protein of the ARF family. FEES Letters, 316, 133-136.
26. Rushmore T. H., King R. G., Paulson K. E. and Picket! C. B., 1990. Regulation of glutathione S-transferase Ya subunit gene expression: identification of unique xenobiotic-responsive element controlling inducible expression by planar aromatic compounds. Proc. Natl. Acad. Sei. USA, 87, 3826-3830.
27. Sambrook J., Fritsch E. F. and Maniatis T., 1989. Molecular cloning, a laboratory manual. Cold Spring Harbor Lab. Press.
28. Sasaki T., Song J., Koga-Ban Y., Matsui E., Fang F., Higo H., Nagasaki H., Hori M., Miya M., MurayamaKayano E., Takiguchi T., Takasuga A., Niki T., Ishimaru K., Ikeda H., Yamamoto Y., Mukai Y., Ohta I., Miyadera N., Havukkala I. and Minobe Y., 1994. Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library. Plant J., 6, 615-624.
29. Uchimiya H., Kidou S. I., Shimazaki T., Aotsuka S., Takamatsu S., Nishi R., Hashimoto H., Amtsubayashi Y., Kidou N., Umeda M. and Kato A., 1992. Random sequencing of cDNA libraries reveals a variety of expressed genes in cultures cells of rice (Oryza saliva L.). Plant J., 2, 1005-1009.
30. Umeda M., Kara C., Matsubayashi Y., Li H. H., Liu Q., Tadokoro F., Aotsuka S. and Uchimiya H., 1994. Expressed sequence tags from cultured of cells rice (Oryza saliva L.) under stressed conditions: analysis of transcripts of genes engaged in ATP-generated pathways. Plant Mol. Biol., 25, 469-478.
31. Zhou J. and Goldsbrugh P. B., 1993. An Arabidopsis gene with homology to glutathione S-transferase is regulated by ethylene. Plant Mol. Biol., 22, 517-523.