Que savons-nous de l'histoire évolutive des Eucaryotes ? 2. De la diversification des protistes à la radiation des multicellulaires

Medecine/Sciences

Volumn 12, Issue 2, 1996, Pages

  Adoutte, André ^a   Germot, Agnès ^b   Le Guyader, Hervé ^a   Philippe, Hervé ^a  

^a UNIVERSITÉ PARIS SACLAY   (France)

^b UNIVERSITÉ CLERMONT AUVERGNE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0005650644     PISSN: 07670974     EISSN: None     Source Type: Journal    
DOI: 10.4267/10608/2045     Document Type: Article

References (100)

1. Philippe H, Germot A, Le Guyader H, Adoutte A. Que savons-nous de l'histoire évolutive des Eucaryotes? 1. L'arbre universel du vivant et les difficultés de la reconstruction phylogénétique. médecine/sciences 1995; 11: I-XIV.
2. Linné C von. Systema Naturae per Regna Tria Naturae, Secundum Classes, Ordines, Geneva, Species cum Characteribus, Differentiis, Synonymis, Locis. Editio decima, reformata; Tom. I, Halmiae: Laurentiae Salvii, 1758.
3. Haeckel E. Das protistenreich. Eine populäre Uebersicht über das Formengebeit der niedersten Lebewesen. Mit einem wissenschaftlichen Anhange: System der Protisten, Leipzig: Günther, 1878.
4. Copeland HF. The classification of lower organisms. Palo Alto CA: Pacific Books, 1956.
5. Whittaker RH. New concepts of kingdoms of organisms. Science 1969; 163: 150-60.
6. de Puytorac P, Grain J, Mignot JP. Précis de Protistologie. Paris : Soc. Nouvelle Ed. Boubée, 1987.
7. Lee JJ, Hutner SH, Bovee EC. An illustrated guide to the protozoa. Lawrence, Kansas: Society of Protozoologists, 1985.
8. Margulis L, Corliss JO, Melkonian M, Chapman DJ. Handbook of Protoctista. Boston: Jones and Bartlett Publishers, 1990.
9. Būtschli O. Protozoa. In: Klassen und Ordnungen des Thier-Reichs, Vol. 1. Leipzig: Winter'sehe Verlag, 1880-9.
10. Corliss JO. The kingdom Protista and its 45 phyla. BioSystems 1984; 17: 87-126.
11. Patterson DJ. Protozoa: Evolution and Systematics. In: Hausmann K, Hülsmann N, eds. Progress in Protistology. Stuttgart-Jena: Gustav Fischer Verlag, 1994: 1-14.
12. Taylor FJR. Problems in the development of an explicit hypothetical phylogeny of the lower eukaryotes. BioSystems 1978; 10: 67-89.
13. Hori H, Osawa S. Origin and evolution of organisms as deduced from 5S ribosomal RNA sequences. Mol Biol Evol 1987; 4: 445-72.
14. Sogin ML, Elwood HJ, Gunderson JH. Evolutíonary diversity of eukaryotic small-subunit rRNA genes. Proc Natl Acad Sci USA 1986; 83: 1383-7.
15. Baroin A, Perasso R, Qu LH, Brugerolle G, Bachellerie JP, Adoutte A. Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA. Proc Natl Acad Sci USA 1988; 85: 3474-8.
16. Vossbrinck CR, Maddox JV, Friedman S, Debrunner-Vossbrinck BA, Woese CR. Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes. Nature 1987; 326: 411-4.
17. Vossbrinck CR, Woese CR. Eukaryotic ribosomes that lack a 5.8S RNA. Nature 1986; 320: 287-8.
18. Sogin ML, Gunderson JH, Elwood HJ, Alonso RA. Peattie DA. Phylogenetic significance of the kingdom concept : an unusual eukaryotic 16S-like ribosomal RNA from Giardia Lamblia. Science 1989; 243: 75-7.
19. Cavalier-Smith T. Eukaryotes with no mitochondria. Nature 1987; 326: 332-3.
20. Cavalier-Smith T. Archamoebae: the ancestral eukaryotes? BioSystems 1991; 25: 25-38.
21. Qu LH, Nicoloso M, Bachellerie JP. Phylogenetic calibration of the 5' terminal domain of large rRNA achieved by determining twenty eucaryotic sequences. J Mol Evol 1988; 28: 113-24.
22. Caron F, Meyer E. Does Paramecium primaurelia use a different genetic code in its macronucleus? Nature 1985; 314: 185-8.
23. Lenaers G, Maroteaux L, Michot B, Herzog M. Dinoflagellates in Evolution. A molecular phylogenetic analysis of large subunit ribosomal RNA. J Mol Evol 1989; 29: 40-51.
24. Sogin ML. The phylogenetic significance of sequence diversity and length variations in Eukaryotic small subunit ribosomal RNA coding regions. In: Warren L, Koprowski H, eds. New perspectives on evolution. New York : Wiley-Liss Inc., 1991: 175-88.
25. Perasso R, Baroin A, Qu LH, Bachellerie JP, Adoutte A. Origin of the algae. Nature 1989; 339: 1-3.
26. Sogin ML. The origin of eukaryotes and evolution into major kingdoms. In: Bengtson S, ed. Early life on earth. Nobel Symposium No 84, New York: Columbia UP, 1994: 181-92.
27. Schlegel M. Molecular phylogeny of eukaryotes. Trend Ecol Evolut 1994; 9: 330-5.
28. Cavalier-Smith T. Kingdom Protozoa and its 18 phyla. Microbiol Rev 1993; 953-94.
29. Cedergren R, Gray MW, Abel Y, Sankoff D. The evolutionary relationships among know life forms. J Mol Evol 1988; 28: 98-112.
30. Hasegawa M, Hashimoto T. Ribosomal RNA trees misleading? Nature 1993; 361: 23.
31. Leipe DD, Gunderson JH, Nerad TA, Sogin ML. Small subunit ribosomal RNA of Hexamita inflate and the quest for the first branch in the eukaryotic tree. Mol Biochem Parasitol 1993; 59: 41-8.
32. Philippe H Microsporidia as the earliest eukaryotic lineage: evidence from a new method testing phylogenetic tree reliability. Soumis.
33. Gould SJ. La vie est belle. Les surprises de L'évolution Paris: Éd. du Seuil, 1991.
34. Conway Morris S. The fossil record and the early evolution of the Metazoa. Nature 1993; 361: 219-25.
35. Briggs DEG, Erwin DH, Collier FJ. The fossils of the Burgess Shale. Washington: Smithsonian Institution Press, 1994.
36. Philippe H, Chenuil A, Adoutte A. Can the Cambrian explosion be inferred through molecular phylogeny? Development 1994; supplement: 15-25.
37. Hall BK. Evolutionary developmental biology. London: Chapman and Hall, 1992.
38. Liem KL. Key evolutionary innovations, differential diversity, and symecomorphosis. In: Nitecki MH, ed. Evolutionary innovations. Chicago: The University Press, 1990; 147-70
39. Knoll AH. The early evolution of eukarvotes. A geological perspective. Science 1992; 256: 622-7.
40. Eldredge N, Gould SJ. Punctuated equilibria: an alternative in phyletic gradualism. In: Schopf TJM, ed. Models in paleobiology. San francisco: Freeman, Cooper and Company, 1972: 82-115.
41. Takvorian P, Cali A. Enzyme histochemical identification of the Golgi apparatus in the microsporidian, Glugea stephani. J Euk Microbiol 1994; 41: 63S-4S.
42. Biderre C, Pages M, Metenier G, David D, Bata J, Prensier G, Vivares CP. On small genomes in eukaryotic organisms: molecular karyotypes of two microsporidian species (Protozoa) parasites of vertebrates. C R Acad Sci Paris 1994; 317: 399-404.
43. Chen WJ, Barr AR. Chromosomal evidence on the sporogony of Ambryospora californica (Microspora: Ambryosporidae) in Culex tarsalis (Diptera: Culicidae). J Euk Microbiol 1995; 42: 103-8.
44. Brugerolle G. Evolution and diversity of amitochondrial zooflagellates. J Euk microbiol 1993; 40: 616-8.
45. Müller M. The hydrogenosome. J Gen Microbiol 1993; 139: 2879-89.
46. Müller M. Energy metabolism of protozoa without mitochondria. Ann Rev Microbiol 1988; 42: 465-88.
47. Curgy JJ, Vavra I, Vivares C. Presence of ribosomal RNAs with prokaryotic properties in Microsporidia, eukaryotic organisms. Biol Cellulaire 1980; 38: 49-52.
48. Boothroyd JC, Wang A, Campbell DA, Wang CC. An unusually compact ribosomal DNA repeat in the protozoan Giardia lamblia. Nucleic Acids Res 1987; 15: 4065-85.
49. Champney WS, Chittum HS, Samuels R. Ribosomes from trichomonad protozoa have prokaryotic characteristics. Int J Biochem 1992, 24: 1125-33.
50. Katiyar SK, Vivesvara GS, Edlind TD. Comparisons of ribosomal RNA sequences from amitochondrial protozoa: implications for processing, mRNA binding and paromycin susceptibility. Gene 1995; 152: 27-33.
51. Viale AM, Arakaki AK. The chaperone connection to the origins of the eukaryotic organelles. FEBS Letters 1994; 341: 146-51.
52. Clark CG, Roger AJ. Direct evidence for secondary loss of mitochondria in Entamoeba histolytica. Proc Natl Acad Sci USA 1995; 92: 6518-21.
53. Gupta RS, Aitken K, Falah M, Singh B. Cloning of Giardia lamblia heat shock protein HSP70 homologs: Implications regarding origin of eukaryotic cells and of endoplasmic reticulum. Proc Natl Acad Sci USA 1994; 91: 2895-9.
54. Soltys BJ, Gupta RS. Presence and cellular distribution of a 60-kDa protein related to mitochondrial HSP 60 in Giardia lamblia. J Parasitol 1994; 80: 580-90.
55. Embley TM, Finlay BJ, Dyal PL, Hirt RP. Wilkinson M, Williams AG. Multiple origins of anaerobic ciliate with hydrogenosomes within the radiation of aerobic ciliates. Proc R Soc Lond B Biol Sci 1995; 262: 87-93.
56. Hrdy I, Müller M. Primary structure and eubacterial relationships of the pyruvate: ferredoxin oxidoreductase of the amitochondriate eukaryote Trichomonas vaginalis J Mol Evol 1996 (sous presse).
57. Saccone C. The evolution of mitochondrial DNA. Curr Opin Genet Dev 1994; 4: 875-81.
58. Gray MW, Cedergren R, Abel Y, Sankoff D. On the evolutionary origin of the plant mitochondrion and its genome. Proc Natl Acad Sci USA 1989; 86: 2267-71.
59. Gray MW. The endosymbiont hypothesis revisited In: Wolstenholme DR, Jeon KW, eds. Mitochondrial genomes. San Diego, California: Academic Press Inc, 1992.
60. Kivic PA, Walne PL. An evaluation of a possible phylogenetic relationship between the Euglenophyta and Kinetoplastida. Origins of Life 1984; 13: 269-88.
61. Hinkle G, Sogin ML. The evolution of the Vahlkampfiidae as deduced from 16S-like ribosomal RNA analysis. Euk Microbiol 1993; 40: 599-603.
62. Merle C, Moullade M, Lima O, Perasso R. Essai de caractérisation phylogénétique de Foraminifères planctoniques à partir de séquences partielles d'ARNr 28S. C R Acad Sci Paris 1994; 319: 149-53.
63. Pawlowski J, Bolivar I, Guiard-Maffia J, Gouy M. Phylogenetic position of Foraminifera inferred from LSU rRNA gene sequences. Mol Biol Evol 1994; 11: 929-38.
64. Gilbert W, Glynias M. On the ancient nature of introns. Gene 1993; 137-44.
65. Kersanach R, Brinkmann H, Liaud M-F, Zhang DX, Martin W, Cerff R. Five identical intron positions in ancient duplicated genes of eubacterial origin. Nature 1994; 367: 387-9.
66. Logsdon JM Jr, Palmer JD. Origin of introns - early or late? Nature 1994; 369: 526.
67. Lambowitz A, Belford M. Introns as mobile genetic elements. Annu Rev Biochem 1993; 62: 587-622.
68. Cavalier-Smith T. Intron phylogenyy: a new hypothesis. Trends Genet 1991; 7: 145-8.
69. Ferat JL, Michel F. Group II self-splicing introns in bacteria. Nature 1993; 364: 358-61.
70. Mattick JS. Introns: evolution and function. Curr Opin Gen Dev 1994; 4: 823-31.
71. Stelly N, Halpern S, Nicolas G, Fragu P, Adoutte A. Direct visualization of a vast cortical calcium compartment in paramecium by secondary ion mass spectrometry (SIMS) microscopy: possible involvement in exocytosis. J Cell Sci 1995; 108: 1895-909.
72. Gardner MJ, Goldman N, Barnett P, Moore PW, Rangachari K, Strath M, Whyte A, Williamson DH, Wilson RJ. Phylogenetic analysis of the rpoB gene from the plastid-like DNA of Plasmodium falciparum. Mol Biochem Parasitol 1994; 66: 221-31.
73. Eisler K. Somatic kinetics or paroral membrane. Which came first in ciliate evolution? BioSystems 1992; 239-54.
74. Fleury A, Delgado P, Iftode F, Adoutte A Molecular phylogeny of ciliates: What does tell us about the evolution of the cytoskeleton and of developmental strategies? Dev Genetics 1992; 247-54.
75. Leipe DD, Wainright PO, Gunderson JH, Porter D, Patterson DJ, Valois F, Himmerich S, Sogin ML. The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis. Phycologia 1994; 33: 369-77.
76. Loiseaux-de Goër S. Plastid lineages. In: Round FE, Chapman DJ, eds. Progress in Phycological Research, Volume 10. Biopress Ltd. 1994: 137-77.
77. Bhattacharya D, Medlin L. The phylogeny of plastids: a review based on comparisons of small-subunit ribosomal RNA coding regions. J Phycol 1995; 31: 489-98.
78. Leblanc C, Boyen C, Richard O, Bonnard G, Grienenberger JM, Kloareg B. Complete sequence of the mitochondrial DNA of the rhodophyte alga Chondrus crispus (Gigartinales). Gene content and genome organization. J Mol Biol 1995; 484-95.
79. Ragan MA, Gutell RR. Are red algae plants? Bot J Linn Soc 1995; 117 (sous presse).
80. Gibbs S. The chloroplasts of some algal groups may have evolved from endosymbiotic eukaryotic algae. Ann N Y Acad Sci 1981; 361: 193-207.
81. Douglas SE, Murphy CA, Spencer DF, Gray MW. Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes. Nature 1991; 350: 148-51.
82. McFadden GI, Gilson PR, Hill DRA. Goniomonas: rRNA sequences indicate that this phagotrophic flagellate is a close relative of the host component of cryptomonads. Eur J Phycol 1994; 29: 29-32.
83. Cavalier-Smith T. The kingdom chromista. In: Green JC, Leadbeater BSC, Diver WC, eds. The chromophyte algae: problems and perspectives. Oxford: Clarendon Press, 1989: 379-405.
84. Cavalier-Smith T, Allsopp MTEP, Chao EE. Chimeric conundra: are nucleomorphs and chromists monophyletic or polyphyletic? Proc Natl Acad Sci USA 1994; 91: 11368-72.
85. McFadden GI, Gilson PR, Hofmann CJ, Adcock GJ, Maier UG. Evidence that an amoeba acquired a chloroplast by retaining part of an engulfed eukaryotic algae. Proc Natl Acad Sci USA 1994; 91: 3690-4.
86. Gantt JS, Baldauf SL, Calie PJ, Weeden NF, Palmer JD. Transfer of rpl22 to the nucleus greatly preceded its loss from the chloroplast and involved the gain of an intron. EMBO J 1991; 10: 3073-8.
87. Wainright PO, Hinkle G, Sogin ML, Stickel SK. Monophyletic origins of the Metazoa: an evolutionary link with fungi. Science 1993; 260: 340-2.
88. Baldauf SL, Palmer JD. Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins. Proc Natl Acad Sci USA 1993; 90: 11558-62.
89. Nikoh N, Hayase N, Iwabe N, Kuma KI, Miyata T. Phylogenetic relationship of the kingdoms Animalia, Plantae, and Fungi, inferred from 23 different protein species. Mol Biol Evol 1994; 11: 762-8.
90. Cavalier-Smith T. The origin of Fungi and pseudofungi. In Evolutionary Biology of the Fungi (British Mycological Society Symposium 12). Rayner ADM, Brasier CM, Moore D, eds. Cambridge, University Press, 1987: 339-53.
91. Rodrigo AG, Bergquist PR, Bergquist PL. Inadequate support for an evolutionary link between the Metazoa and the Fungi. Syst Biol 1994; 43: 578-84.
92. Van der Auwera G, De Baere R, Van de Peer Y, De Rijk P, Van den Broeck I, De Wachter R. The phylogeny of the Hyphochytriomycota as deduced from ribosomal RNA sequences of Hyphochytrium catenoides. Mol Biol Evol 1995; 12: 671-8.
93. Markos A, Miretsky A, Muller M. A glyceraldehyde-3-phosphate dehydrogenase with eubacterial features in the amitochondriate eukaryote, Trichomonas vaginalis. J Mol Evol 1993; 37: 631-43.
94. Forterre P, Benachenhou-Lahfa N, Confalonieri F, Duguet M, Elie C, Labedan B. The nature of the last universal ancestor and the root of the tree of life, still open questions. BioSystems 1993; 28: 15-32.
95. Loomis WF, Smith DW. Molecular phylogeny of Dictyostelium discoideum by protein sequence comparison. Proc Natl Acad Sci USA 1990; 87: 9093-7.
96. Kuma KI, Nikoh N, Iwabe N, Miyata T. Phylogenetic position of Dictyostelium inferred from multiple protein data sets. J Mol Evol 1995; 41: 238-46.
97. Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 1978; 27: 401-10.
98. Sankoff D, Leduc G, Antoine N, Paguin B, Lang BF, Cedergren R. Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome. Proc Natl Acad Sci USA 1992; 89: 6575-9.
99. Adoutte A. From unicellular to multicellular organisms: Can we trace the evolution of the tools and mechanisms of morphogenesis? In: Beysens D, Forgacs G, Gaill F, eds. Interplay of genetic and physical processes in the development of biological form. Singapore: World Scientific, 1995: 168-84.
100. Garcia-Fernandez J, Holland PWH. Archetypal organization of the amphioxus Hox gene cluster. Nature 1994; 370: 563-6.